Wall clock time and date at job start Wed Apr 1 2020 00:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00109 * 2 1 4 4 H 1.48501 * 109.46988 * 269.99784 * 3 2 1 5 5 H 1.48504 * 109.46883 * 29.99406 * 3 2 1 6 6 H 1.48496 * 109.47408 * 149.99512 * 3 2 1 7 7 C 1.38816 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00060 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99827 * 179.72677 * 9 7 2 11 11 C 1.53007 * 109.46833 * 174.98320 * 10 9 7 12 12 H 1.08997 * 109.58782 * 59.67986 * 11 10 9 13 13 C 1.53194 * 109.58512 * 299.38844 * 11 10 9 14 14 C 1.53074 * 109.29139 * 185.72099 * 13 11 10 15 15 C 1.53035 * 109.65660 * 61.16005 * 14 13 11 16 16 C 1.53188 * 109.31365 * 298.69159 * 15 14 13 17 17 N 1.46927 * 108.77399 * 54.64124 * 16 15 14 18 18 C 1.34779 * 120.63477 * 126.41226 * 17 16 15 19 19 O 1.21280 * 120.00200 * 185.40845 * 18 17 16 20 20 C 1.50694 * 119.99765 * 5.41087 * 18 17 16 21 21 C 1.50695 * 109.47308 * 180.02562 * 20 18 17 22 22 C 1.34240 * 126.50223 * 265.02752 * 21 20 18 23 23 N 1.36824 * 109.93301 * 179.97438 * 22 21 20 24 24 H 0.96997 * 125.06523 * 180.02562 * 23 22 21 25 25 C 1.37694 * 109.87479 * 359.97438 * 23 22 21 26 26 C 1.39121 * 133.50730 * 180.02562 * 25 23 22 27 27 C 1.37751 * 119.77965 * 179.30793 * 26 25 23 28 28 C 1.38839 * 120.66029 * 0.54454 * 27 26 25 29 29 C 1.36622 * 120.52801 * 359.66907 * 28 27 26 30 30 C 1.39631 * 119.76714 * 359.97438 * 29 28 27 31 31 H 0.96997 * 120.00192 * 0.02562 * 1 2 3 32 32 H 0.97003 * 119.99951 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47129 * 294.97994 * 10 9 7 34 34 H 1.09003 * 109.47482 * 54.97947 * 10 9 7 35 35 H 1.08999 * 109.49791 * 305.53589 * 13 11 10 36 36 H 1.09001 * 109.49299 * 65.62680 * 13 11 10 37 37 H 1.09004 * 109.34783 * 301.13035 * 14 13 11 38 38 H 1.09000 * 109.43528 * 181.23987 * 14 13 11 39 39 H 1.09005 * 109.49633 * 178.74855 * 15 14 13 40 40 H 1.08996 * 109.52955 * 58.66370 * 15 14 13 41 41 H 1.09001 * 109.59224 * 294.85656 * 16 15 14 42 42 H 1.08999 * 109.58759 * 174.42265 * 16 15 14 43 43 H 1.09012 * 109.46973 * 299.99833 * 20 18 17 44 44 H 1.08998 * 109.47749 * 59.99925 * 20 18 17 45 45 H 1.08000 * 125.03176 * 359.92051 * 22 21 20 46 46 H 1.08007 * 120.11283 * 359.97172 * 26 25 23 47 47 H 1.07992 * 119.67340 * 180.19406 * 27 26 25 48 48 H 1.07997 * 119.73022 * 179.64734 * 28 27 26 49 49 H 1.08001 * 120.11374 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 -0.0049 11 6 1.0691 -4.8172 0.1224 12 1 0.3691 -4.7940 -0.7127 13 6 0.2996 -4.6937 1.4413 14 6 -0.5830 -5.9302 1.6295 15 6 0.2933 -7.1832 1.6935 16 6 1.0601 -7.3330 0.3758 17 7 1.8012 -6.0912 0.1162 18 6 3.1272 -6.1200 -0.1235 19 8 3.7453 -5.0830 -0.2390 20 6 3.8418 -7.4409 -0.2480 21 6 5.3051 -7.1974 -0.5129 22 6 5.9046 -7.1643 -1.7135 23 7 7.2416 -6.9172 -1.5607 24 1 7.8819 -6.8473 -2.2860 25 6 7.5427 -6.7813 -0.2240 26 6 8.7208 -6.5286 0.4715 27 6 8.6971 -6.4336 1.8456 28 6 7.5100 -6.5987 2.5464 29 6 6.3424 -6.8520 1.8837 30 6 6.3421 -6.9450 0.4905 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.6122 -3.7523 -0.9388 34 1 2.7537 -3.6784 0.8340 35 1 1.0053 -4.6233 2.2690 36 1 -0.3233 -3.7996 1.4167 37 1 -1.2734 -6.0122 0.7900 38 1 -1.1482 -5.8346 2.5566 39 1 -0.3359 -8.0595 1.8498 40 1 1.0006 -7.0915 2.5177 41 1 0.3575 -7.5159 -0.4372 42 1 1.7587 -8.1662 0.4523 43 1 3.7294 -8.0036 0.6789 44 1 3.4127 -8.0099 -1.0727 45 1 5.4056 -7.3117 -2.6599 46 1 9.6490 -6.3966 -0.0647 47 1 9.6121 -6.2342 2.3835 48 1 7.5097 -6.5268 3.6239 49 1 5.4227 -6.9789 2.4355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480365369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:06 Heat of formation + Delta-G solvation = 24.652242 kcal Electronic energy + Delta-G solvation = -30042.502378 eV Core-core repulsion = 26162.492130 eV Total energy + Delta-G solvation = -3880.010248 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.20616 -41.30711 -38.36929 -37.72702 -36.62419 -34.44072 -33.67530 -33.47982 -31.53241 -30.94651 -30.15140 -28.37889 -27.40995 -25.50458 -24.87599 -23.73179 -22.73178 -22.65779 -21.96639 -20.67083 -19.74688 -19.08367 -18.64941 -17.82258 -17.30560 -16.94451 -16.47027 -16.41852 -16.17221 -15.49892 -15.41572 -15.26612 -15.10350 -14.95078 -14.85091 -14.70975 -14.50181 -14.26856 -14.02574 -13.59281 -13.47744 -13.35673 -13.06183 -12.89609 -12.85479 -12.64906 -12.54143 -12.25497 -12.20541 -12.05635 -11.96817 -11.78906 -11.68608 -11.53605 -11.36245 -10.98654 -10.55764 -10.02288 -9.47490 -9.09408 -8.94873 -8.52238 -7.97579 -5.25105 0.25005 0.73860 1.41182 1.44003 1.53142 1.64963 1.83625 2.21159 2.32086 2.55181 3.02372 3.34833 3.70289 3.82482 3.90076 3.91267 3.96399 4.06067 4.14811 4.16575 4.21458 4.25286 4.33770 4.41093 4.44968 4.48433 4.61396 4.68169 4.68897 4.75336 4.83546 4.87765 4.96404 5.01160 5.04085 5.12324 5.16169 5.22801 5.25372 5.31342 5.34875 5.44082 5.51871 5.59048 5.72326 5.76030 5.80995 5.87250 6.25834 6.28418 6.63438 6.76340 7.31330 7.43155 8.07054 8.34631 9.26058 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008589 B = 0.003653 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.109139 B = 7662.329294 C = 9738.356664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.057 0.943 9 N -0.745 5.745 10 C 0.182 3.818 11 C 0.150 3.850 12 H 0.068 0.932 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.129 4.129 16 C 0.101 3.899 17 N -0.608 5.608 18 C 0.496 3.504 19 O -0.565 6.565 20 C -0.049 4.049 21 C -0.182 4.182 22 C 0.067 3.933 23 N -0.588 5.588 24 H 0.429 0.571 25 C 0.072 3.928 26 C -0.138 4.138 27 C -0.111 4.111 28 C -0.157 4.157 29 C -0.092 4.092 30 C -0.118 4.118 31 H 0.253 0.747 32 H 0.373 0.627 33 H 0.017 0.983 34 H 0.006 0.994 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.134 0.866 45 H 0.199 0.801 46 H 0.141 0.859 47 H 0.149 0.851 48 H 0.136 0.864 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.558 -26.727 0.223 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.262 4.262 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.075 0.925 9 N -0.390 5.390 10 C 0.056 3.944 11 C 0.046 3.954 12 H 0.086 0.914 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.167 4.167 16 C -0.020 4.020 17 N -0.343 5.343 18 C 0.286 3.714 19 O -0.443 6.443 20 C -0.089 4.089 21 C -0.189 4.189 22 C -0.060 4.060 23 N -0.192 5.192 24 H 0.268 0.732 25 C -0.035 4.035 26 C -0.158 4.158 27 C -0.130 4.130 28 C -0.176 4.176 29 C -0.110 4.110 30 C -0.123 4.123 31 H 0.062 0.938 32 H 0.205 0.795 33 H 0.034 0.966 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.152 0.848 45 H 0.216 0.784 46 H 0.158 0.842 47 H 0.166 0.834 48 H 0.154 0.846 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.129 -26.115 0.038 28.011 hybrid contribution 0.253 1.752 -0.231 1.785 sum 10.382 -24.363 -0.193 26.484 Atomic orbital electron populations 1.69795 1.06265 1.26120 1.59525 1.25488 0.96504 1.00671 1.03568 0.85171 0.77550 0.79610 0.77636 1.21081 1.21135 1.20348 1.19458 0.90838 0.85730 1.41435 0.92524 1.42746 1.05499 1.01388 1.89408 1.21043 0.91638 0.84009 0.97665 1.21164 0.93109 0.83241 0.97859 0.91433 1.21802 0.98532 0.99448 0.95945 1.21530 0.97534 0.93401 1.02725 1.21920 0.99006 0.98505 0.97275 1.22129 0.96778 0.85006 0.98039 1.48306 1.07591 1.07671 1.70713 1.21571 0.81606 0.92503 0.75758 1.90833 1.66812 1.35911 1.50734 1.20013 0.89389 0.93262 1.06200 1.19871 0.94035 1.12974 0.92005 1.22067 0.82994 1.01156 0.99738 1.41696 1.09007 1.62726 1.05737 0.73228 1.18545 0.95893 1.04517 0.84593 1.20358 0.95699 1.05253 0.94523 1.21136 0.98875 0.99729 0.93234 1.20919 0.92637 1.03237 1.00792 1.20435 0.98671 0.99564 0.92377 1.19397 0.93494 1.05621 0.93789 0.93785 0.79457 0.96552 0.97646 0.93920 0.92904 0.90919 0.91032 0.87321 0.92364 0.89535 0.86459 0.86581 0.84837 0.78433 0.84154 0.83360 0.84578 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.99 13.06 21.65 0.28 -61.71 16 2 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 49.87 29.55 68.60 2.03 51.90 16 4 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 6 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.24 -15.35 9.99 84.03 0.84 -14.51 16 8 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 9 N -0.75 -43.06 5.28 -343.44 -1.81 -44.87 16 10 C 0.18 9.08 4.10 86.38 0.35 9.43 16 11 C 0.15 5.52 3.04 44.98 0.14 5.66 16 12 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 13 C -0.12 -4.05 5.13 30.68 0.16 -3.89 16 14 C -0.11 -2.57 5.88 30.63 0.18 -2.39 16 15 C -0.13 -2.06 6.08 30.67 0.19 -1.88 16 16 C 0.10 1.60 6.33 86.36 0.55 2.15 16 17 N -0.61 -16.88 2.97 -795.00 -2.36 -19.25 16 18 C 0.50 15.32 7.60 87.65 0.67 15.99 16 19 O -0.57 -24.51 11.44 -3.03 -0.03 -24.54 16 20 C -0.05 -0.97 4.64 29.10 0.13 -0.83 16 21 C -0.18 -4.50 4.81 -18.63 -0.09 -4.59 16 22 C 0.07 1.39 11.73 83.00 0.97 2.37 16 23 N -0.59 -11.89 6.07 -187.62 -1.14 -13.03 16 24 H 0.43 5.67 8.96 -92.71 -0.83 4.84 16 25 C 0.07 1.83 7.28 39.03 0.28 2.11 16 26 C -0.14 -3.05 10.08 22.37 0.23 -2.82 16 27 C -0.11 -2.37 10.01 22.30 0.22 -2.15 16 28 C -0.16 -3.74 9.97 22.04 0.22 -3.52 16 29 C -0.09 -2.52 10.05 22.23 0.22 -2.30 16 30 C -0.12 -3.37 6.35 -20.20 -0.13 -3.50 16 31 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 32 H 0.37 21.86 6.78 -92.71 -0.63 21.23 16 33 H 0.02 0.91 6.44 -2.39 -0.02 0.90 16 34 H 0.01 0.31 7.04 -2.39 -0.02 0.29 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 2.11 7.19 -2.39 -0.02 2.09 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 39 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.12 1.08 5.96 -2.39 -0.01 1.06 16 43 H 0.12 1.80 7.47 -2.38 -0.02 1.78 16 44 H 0.13 1.61 8.12 -2.39 -0.02 1.59 16 45 H 0.20 2.62 8.06 -2.91 -0.02 2.59 16 46 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 47 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 48 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 49 H 0.12 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -87.45 389.66 2.07 -85.37 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: -0.49 Total: 34.70 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 5.60 Total: -8.57 kcal Atomic # 7 Polarization: -133.83 SS G_CDS: -5.03 Total: -138.86 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.03 Total: -24.54 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.03 Total: 51.90 kcal Total: -87.45 2.07 -85.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480365369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.024 kcal (2) G-P(sol) polarization free energy of solvation -87.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds