Wall clock time and date at job start Wed Apr 1 2020 01:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48497 * 109.47049 * 270.00079 * 3 2 1 5 5 H 1.48500 * 109.47114 * 30.00436 * 3 2 1 6 6 H 1.48500 * 109.46949 * 150.00322 * 3 2 1 7 7 C 1.38810 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00551 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00090 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47269 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47194 * 304.99635 * 11 10 9 13 13 C 1.52999 * 109.46991 * 65.00478 * 11 10 9 14 14 C 1.52997 * 109.46991 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 11 16 16 C 1.53002 * 109.46972 * 60.00459 * 15 14 13 17 17 C 1.52997 * 109.46817 * 299.99733 * 16 15 14 18 18 H 1.09001 * 109.47289 * 180.02562 * 17 16 15 19 19 N 1.46500 * 109.47473 * 299.99988 * 17 16 15 20 20 C 1.34768 * 120.00056 * 275.00296 * 19 17 16 21 21 O 1.21601 * 120.00319 * 359.97438 * 20 19 17 22 22 C 1.47506 * 120.00223 * 179.97438 * 20 19 17 23 23 C 1.41195 * 126.37628 * 179.97438 * 22 20 19 24 24 C 1.37991 * 106.86506 * 179.97438 * 23 22 20 25 25 C 1.41388 * 131.97845 * 180.02562 * 24 23 22 26 26 C 1.35742 * 119.32883 * 180.02562 * 25 24 23 27 27 C 1.40821 * 119.72084 * 359.96958 * 26 25 24 28 28 C 1.34544 * 120.58688 * 0.02562 * 27 26 25 29 29 N 1.37445 * 120.73680 * 0.02562 * 28 27 26 30 30 C 1.35127 * 131.28144 * 180.28741 * 29 28 27 31 31 H 0.97002 * 120.00534 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00403 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.46913 * 59.99757 * 10 9 7 34 34 H 1.09001 * 109.46815 * 300.00334 * 10 9 7 35 35 H 1.09002 * 109.46719 * 299.99711 * 13 11 10 36 36 H 1.08993 * 109.47839 * 59.99553 * 13 11 10 37 37 H 1.09001 * 109.47289 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47611 * 59.99933 * 14 13 11 39 39 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 40 40 H 1.09000 * 109.47054 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47070 * 179.97438 * 16 15 14 42 42 H 1.08996 * 109.47407 * 59.99513 * 16 15 14 43 43 H 0.97007 * 119.99645 * 94.99637 * 19 17 16 44 44 H 1.07999 * 126.56319 * 0.02562 * 23 22 20 45 45 H 1.07999 * 120.33550 * 359.96452 * 25 24 23 46 46 H 1.08001 * 120.13814 * 179.97438 * 26 25 24 47 47 H 1.08004 * 119.71125 * 179.97438 * 27 26 25 48 48 H 1.08000 * 119.62947 * 179.97438 * 28 27 26 49 49 H 1.07996 * 125.61890 * 359.96635 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3802 -4.7127 0.8421 13 6 0.2687 -4.8115 -1.3070 14 6 -0.7259 -5.9741 -1.3061 15 6 0.0345 -7.2957 -1.1801 16 6 0.8297 -7.3040 0.1270 17 6 1.8243 -6.1414 0.1261 18 1 2.3912 -6.1475 1.0571 19 7 2.7434 -6.2858 -1.0056 20 6 3.8425 -7.0567 -0.8869 21 8 4.0716 -7.6320 0.1596 22 6 4.7676 -7.2026 -2.0265 23 6 5.9519 -7.9710 -2.0507 24 6 6.5001 -7.8222 -3.3082 25 6 7.6702 -8.3526 -3.8986 26 6 7.9720 -8.0305 -5.1822 27 6 7.1187 -7.1761 -5.9067 28 6 6.0070 -6.6755 -5.3377 29 7 5.6814 -6.9867 -4.0392 30 6 4.6344 -6.6163 -3.2693 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6848 -3.7144 0.8894 34 1 2.6848 -3.7144 -0.8905 35 1 -0.2734 -3.8701 -1.3965 36 1 0.9525 -4.9185 -2.1490 37 1 -1.2928 -5.9680 -2.2371 38 1 -1.4098 -5.8666 -0.4641 39 1 0.7182 -7.4032 -2.0221 40 1 -0.6741 -8.1240 -1.1799 41 1 1.3711 -8.2457 0.2170 42 1 0.1460 -7.1964 0.9690 43 1 2.5608 -5.8267 -1.8403 44 1 6.3516 -8.5626 -1.2403 45 1 8.3179 -9.0067 -3.3336 46 1 8.8627 -8.4280 -5.6460 47 1 7.3592 -6.9196 -6.9279 48 1 5.3638 -6.0213 -5.9075 49 1 3.8269 -5.9678 -3.5755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483441046.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:17 Heat of formation + Delta-G solvation = 15.561649 kcal Electronic energy + Delta-G solvation = -29551.187269 eV Core-core repulsion = 25670.782823 eV Total energy + Delta-G solvation = -3880.404446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.18406 -41.26339 -39.23301 -37.29810 -36.45014 -34.67842 -33.99978 -33.70951 -31.59381 -31.22922 -30.24388 -28.68055 -26.98061 -25.32963 -24.67881 -23.74018 -23.24059 -22.67409 -22.01463 -21.13008 -20.01446 -19.26649 -18.65423 -18.21645 -16.99648 -16.84500 -16.68441 -16.53240 -16.22624 -16.13754 -15.84919 -15.33466 -15.26539 -15.14113 -15.03626 -14.82847 -14.57917 -14.36821 -14.00604 -13.44940 -13.39237 -13.10893 -12.97525 -12.90629 -12.78607 -12.70462 -12.59117 -12.43761 -12.20303 -12.11714 -11.92542 -11.84600 -11.43943 -11.40791 -11.18891 -11.06789 -10.99635 -10.84777 -10.03624 -9.54401 -8.98622 -8.36025 -7.95316 -5.23390 -0.17499 0.37389 1.09839 1.46312 1.47719 1.56346 1.69833 2.26986 2.50561 2.55222 2.60810 3.37866 3.53192 3.59145 3.80088 3.83359 3.86185 3.89516 4.04285 4.09863 4.19125 4.25459 4.28879 4.39833 4.43601 4.49476 4.50906 4.59805 4.61175 4.70599 4.75776 4.90484 4.92336 4.94863 5.03901 5.10727 5.19422 5.24402 5.28735 5.30512 5.32369 5.36453 5.42714 5.47646 5.48960 5.54013 5.63209 5.67188 5.88165 6.27157 6.28415 6.60980 7.28257 7.34191 8.09372 8.34824 9.27895 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009165 B = 0.003061 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3054.489297 B = 9146.044754 C =11068.137603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.162 3.838 11 C -0.087 4.087 12 H 0.079 0.921 13 C -0.104 4.104 14 C -0.113 4.113 15 C -0.108 4.108 16 C -0.122 4.122 17 C 0.162 3.838 18 H 0.065 0.935 19 N -0.701 5.701 20 C 0.586 3.414 21 O -0.585 6.585 22 C -0.191 4.191 23 C -0.170 4.170 24 C 0.019 3.981 25 C -0.100 4.100 26 C -0.123 4.123 27 C -0.131 4.131 28 C 0.022 3.978 29 N -0.341 5.341 30 C -0.007 4.007 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.001 0.999 34 H 0.024 0.976 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.407 0.593 44 H 0.146 0.854 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.181 0.819 48 H 0.190 0.810 49 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.985 -20.039 -15.246 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.035 3.965 11 C -0.106 4.106 12 H 0.097 0.903 13 C -0.142 4.142 14 C -0.151 4.151 15 C -0.145 4.145 16 C -0.161 4.161 17 C 0.057 3.943 18 H 0.083 0.917 19 N -0.352 5.352 20 C 0.375 3.625 21 O -0.466 6.466 22 C -0.198 4.198 23 C -0.194 4.194 24 C -0.086 4.086 25 C -0.118 4.118 26 C -0.143 4.143 27 C -0.150 4.150 28 C -0.095 4.095 29 N -0.004 5.004 30 C -0.141 4.141 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.019 0.981 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.244 0.756 44 H 0.164 0.836 45 H 0.175 0.825 46 H 0.181 0.819 47 H 0.198 0.802 48 H 0.207 0.793 49 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 10.261 -20.213 -14.734 27.036 hybrid contribution -0.077 1.443 0.268 1.469 sum 10.184 -18.770 -14.466 25.794 Atomic orbital electron populations 1.69795 1.06411 1.26070 1.59376 1.25489 0.96378 1.00807 1.03645 0.85195 0.77607 0.79744 0.77548 1.21086 1.22072 1.19983 1.19566 0.91262 0.85554 1.41385 0.91348 1.42510 1.05627 1.00789 1.89257 1.20731 0.93617 0.85075 0.97055 1.21449 0.96849 0.92303 1.00044 0.90310 1.21450 0.97965 0.98843 0.95910 1.21528 0.97405 0.93601 1.02519 1.21444 0.98697 0.97548 0.96853 1.21846 0.97508 0.97103 0.99618 1.20803 0.89834 0.94402 0.89259 0.91658 1.45839 1.23397 1.49023 1.16961 1.17694 0.80314 0.78029 0.86473 1.90720 1.75762 1.49338 1.30800 1.19596 0.99392 1.06676 0.94152 1.21142 0.96663 1.05268 0.96320 1.19106 0.96261 1.00656 0.92604 1.20959 0.94018 1.00379 0.96453 1.21421 1.01071 0.98125 0.93688 1.21277 0.93219 0.97979 1.02556 1.22399 1.01024 1.03495 0.82576 1.41490 1.17187 1.31331 1.10363 1.22383 0.94774 1.06639 0.90335 0.93933 0.79043 0.98108 0.95847 0.93071 0.91653 0.90720 0.91935 0.91879 0.90663 0.92430 0.90280 0.75575 0.83632 0.82462 0.81862 0.80204 0.79264 0.78381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.69 13.06 21.65 0.28 -58.40 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -37.47 5.33 -343.45 -1.83 -39.30 16 10 C 0.16 6.59 5.42 86.38 0.47 7.06 16 11 C -0.09 -2.75 2.02 -10.79 -0.02 -2.77 16 12 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 13 C -0.10 -2.90 4.90 30.59 0.15 -2.75 16 14 C -0.11 -2.48 5.92 30.59 0.18 -2.30 16 15 C -0.11 -2.19 5.77 30.59 0.18 -2.01 16 16 C -0.12 -2.96 5.60 30.59 0.17 -2.79 16 17 C 0.16 4.67 2.23 44.99 0.10 4.77 16 18 H 0.07 2.21 7.57 -2.39 -0.02 2.19 16 19 N -0.70 -18.97 3.61 -445.72 -1.61 -20.57 16 20 C 0.59 18.42 7.78 86.69 0.67 19.09 16 21 O -0.58 -22.68 16.58 -4.03 -0.07 -22.75 16 22 C -0.19 -5.23 6.12 -20.15 -0.12 -5.35 16 23 C -0.17 -4.56 10.78 22.94 0.25 -4.31 16 24 C 0.02 0.42 6.70 38.90 0.26 0.68 16 25 C -0.10 -1.54 10.11 22.47 0.23 -1.32 16 26 C -0.12 -1.29 10.07 22.32 0.22 -1.07 16 27 C -0.13 -1.20 9.97 22.06 0.22 -0.98 16 28 C 0.02 0.28 10.89 82.97 0.90 1.18 16 29 N -0.34 -6.71 2.92 -345.07 -1.01 -7.71 16 30 C -0.01 -0.16 11.09 84.14 0.93 0.78 16 31 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.38 20.01 6.85 -92.71 -0.63 19.37 16 33 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.02 0.94 7.61 -2.39 -0.02 0.92 16 35 H 0.05 1.74 7.18 -2.39 -0.02 1.72 16 36 H 0.06 1.64 6.51 -2.39 -0.02 1.63 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.25 7.60 -2.39 -0.02 1.23 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.41 9.43 5.57 -92.70 -0.52 8.92 16 44 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 45 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 46 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 47 H 0.18 0.38 8.06 -2.91 -0.02 0.35 16 48 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 49 H 0.20 3.02 7.42 -2.91 -0.02 3.00 16 Total: -1.00 -75.98 392.96 3.71 -72.26 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -0.19 Total: 36.83 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 6.10 Total: -8.75 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -4.16 Total: -125.99 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.07 Total: -22.75 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -75.98 3.71 -72.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483441046.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.826 kcal (2) G-P(sol) polarization free energy of solvation -75.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds