Wall clock time and date at job start Wed Apr 1 2020 01:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99868 * 2 1 4 4 H 1.48504 * 109.47204 * 270.00103 * 3 2 1 5 5 H 1.48499 * 109.47254 * 29.99493 * 3 2 1 6 6 H 1.48491 * 109.47332 * 149.99781 * 3 2 1 7 7 C 1.38810 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99524 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00307 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00520 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47408 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46862 * 55.00859 * 11 10 9 13 13 C 1.52997 * 109.47482 * 295.00294 * 11 10 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 11 16 16 C 1.53002 * 109.46891 * 299.99597 * 15 14 13 17 17 C 1.52997 * 109.46978 * 60.00410 * 16 15 14 18 18 H 1.09000 * 109.47140 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.47204 * 59.99799 * 17 16 15 20 20 C 1.34773 * 119.99955 * 85.00142 * 19 17 16 21 21 O 1.21592 * 120.00012 * 0.02562 * 20 19 17 22 22 C 1.47500 * 119.99682 * 179.97438 * 20 19 17 23 23 C 1.41197 * 126.37171 * 179.97438 * 22 20 19 24 24 C 1.37989 * 106.86947 * 179.97438 * 23 22 20 25 25 C 1.41392 * 131.98592 * 179.97438 * 24 23 22 26 26 C 1.35736 * 119.33289 * 179.97438 * 25 24 23 27 27 C 1.40827 * 119.72039 * 0.02703 * 26 25 24 28 28 C 1.34541 * 120.58088 * 0.02562 * 27 26 25 29 29 N 1.37429 * 120.74573 * 359.97438 * 28 27 26 30 30 C 1.35138 * 131.28717 * 180.33793 * 29 28 27 31 31 H 0.96994 * 120.00308 * 0.02562 * 1 2 3 32 32 H 0.97008 * 119.99663 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.47031 * 59.99926 * 10 9 7 34 34 H 1.09006 * 109.47249 * 300.00762 * 10 9 7 35 35 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 36 36 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 37 37 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47194 * 299.99650 * 14 13 11 39 39 H 1.08992 * 109.47554 * 59.99639 * 15 14 13 40 40 H 1.09004 * 109.47108 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.47097 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.47142 * 300.00176 * 16 15 14 43 43 H 0.97001 * 119.99882 * 265.00024 * 19 17 16 44 44 H 1.08009 * 126.56657 * 359.93935 * 23 22 20 45 45 H 1.08002 * 120.33114 * 359.97438 * 25 24 23 46 46 H 1.07998 * 120.14353 * 180.02562 * 26 25 24 47 47 H 1.08003 * 119.70757 * 180.02562 * 27 26 25 48 48 H 1.08000 * 119.62604 * 179.97438 * 28 27 26 49 49 H 1.07993 * 125.61530 * 359.96077 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3797 -4.7130 -0.8405 13 6 0.2696 -4.8109 1.3088 14 6 -0.7241 -5.9743 1.3096 15 6 0.0372 -7.2954 1.1842 16 6 0.8315 -7.3042 -0.1234 17 6 1.8253 -6.1409 -0.1242 18 1 2.3915 -6.1474 -1.0556 19 7 2.7452 -6.2837 1.0069 20 6 3.8448 -7.0539 0.8882 21 8 4.0736 -7.6298 -0.1580 22 6 4.7713 -7.1971 2.0269 23 6 5.9558 -7.9653 2.0512 24 6 6.5063 -7.8129 3.3073 25 6 7.6775 -8.3414 3.8972 26 6 7.9815 -8.0156 5.1793 27 6 7.1294 -7.1591 5.9029 28 6 6.0161 -6.6612 5.3346 29 7 5.6877 -6.9769 4.0380 30 6 4.6444 -6.6009 3.2657 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 2.6848 -3.7145 0.8905 34 1 2.6849 -3.7145 -0.8894 35 1 -0.2724 -3.8695 1.3983 36 1 0.9541 -4.9176 2.1503 37 1 -1.2903 -5.9677 2.2410 38 1 -1.4086 -5.8680 0.4680 39 1 0.7216 -7.4017 2.0258 40 1 -0.6708 -8.1243 1.1853 41 1 1.3736 -8.2456 -0.2130 42 1 0.1470 -7.1980 -0.9650 43 1 2.5629 -5.8239 1.8414 44 1 6.3544 -8.5590 1.2417 45 1 8.3237 -8.9978 3.3333 46 1 8.8731 -8.4116 5.6427 47 1 7.3717 -6.8997 6.9229 48 1 5.3734 -6.0061 5.9039 49 1 3.8427 -5.9437 3.5681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483441048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:25 Heat of formation + Delta-G solvation = 34.545833 kcal Electronic energy + Delta-G solvation = -29552.034494 eV Core-core repulsion = 25672.453264 eV Total energy + Delta-G solvation = -3879.581230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.41579 -40.08664 -38.05031 -36.57201 -34.62464 -33.54370 -33.28906 -31.89820 -30.66546 -29.67897 -29.16842 -27.94035 -25.30301 -24.41886 -23.03889 -22.83166 -22.22637 -21.81646 -20.68316 -20.01719 -18.88247 -17.95866 -17.46861 -17.05116 -16.25607 -15.76732 -15.70436 -15.33666 -15.18251 -14.71491 -14.64796 -14.54498 -14.08113 -13.82233 -13.62203 -13.52312 -13.23712 -13.03397 -12.70172 -12.54188 -12.24935 -12.05666 -11.90561 -11.88113 -11.64596 -11.54012 -11.36362 -10.88445 -10.86807 -10.70082 -10.69132 -10.32475 -10.18231 -9.95222 -9.84242 -9.80353 -9.59343 -8.92402 -8.84531 -8.65190 -7.63418 -6.89980 -5.75921 -3.03827 0.49188 1.08879 2.02210 2.41701 3.22313 3.37377 3.43832 3.49304 3.50449 3.61174 4.18764 4.48689 4.51141 4.58551 4.68693 4.79095 4.88881 4.94227 4.96267 4.99329 5.16578 5.27618 5.34709 5.38534 5.53522 5.58874 5.65406 5.67740 5.69069 5.73742 5.80466 5.84685 5.87808 5.97612 6.07055 6.11425 6.19145 6.22657 6.27421 6.32656 6.42490 6.49946 6.52079 6.60830 6.68712 6.71096 6.85245 6.92217 6.98481 7.70800 7.72350 8.42418 8.43488 9.54700 10.12938 10.47839 11.47033 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.003064 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.085242 B = 9135.579735 C =11062.928966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.102 4.102 12 H 0.086 0.914 13 C -0.109 4.109 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.156 3.844 18 H 0.089 0.911 19 N -0.711 5.711 20 C 0.587 3.413 21 O -0.543 6.543 22 C -0.163 4.163 23 C -0.134 4.134 24 C 0.021 3.979 25 C -0.073 4.073 26 C -0.138 4.138 27 C -0.136 4.136 28 C 0.041 3.959 29 N -0.338 5.338 30 C -0.008 4.008 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.398 0.602 44 H 0.155 0.845 45 H 0.143 0.857 46 H 0.133 0.867 47 H 0.145 0.855 48 H 0.163 0.837 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.091 -19.587 12.254 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.121 4.121 12 H 0.104 0.896 13 C -0.147 4.147 14 C -0.158 4.158 15 C -0.153 4.153 16 C -0.167 4.167 17 C 0.051 3.949 18 H 0.107 0.893 19 N -0.362 5.362 20 C 0.374 3.626 21 O -0.421 6.421 22 C -0.171 4.171 23 C -0.159 4.159 24 C -0.083 4.083 25 C -0.092 4.092 26 C -0.158 4.158 27 C -0.156 4.156 28 C -0.077 4.077 29 N -0.002 5.002 30 C -0.142 4.142 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.234 0.766 44 H 0.172 0.828 45 H 0.160 0.840 46 H 0.151 0.849 47 H 0.163 0.837 48 H 0.180 0.820 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.350 -19.754 11.735 24.806 hybrid contribution 0.063 1.356 0.530 1.457 sum 9.413 -18.398 12.265 24.032 Atomic orbital electron populations 1.69652 1.05056 1.25579 1.58027 1.24714 0.95506 0.97600 1.03184 0.86210 0.78626 0.83939 0.77556 1.21735 1.21815 1.20841 1.19226 0.91008 0.84231 1.42335 0.91331 1.42370 1.05810 0.99912 1.89433 1.20643 0.92979 0.85279 0.97870 1.21626 0.97807 0.93471 0.99175 0.89621 1.21523 0.97625 0.98948 0.96615 1.21587 0.98046 0.94570 1.01618 1.21486 0.98588 0.97410 0.97812 1.21904 0.97907 0.98684 0.98183 1.20954 0.89681 0.94407 0.89836 0.89332 1.45956 1.23842 1.49429 1.16999 1.17381 0.80143 0.78675 0.86434 1.90754 1.74823 1.47456 1.29060 1.19702 0.99050 1.04598 0.93759 1.21102 0.95644 1.03841 0.95268 1.18829 0.95455 1.00992 0.92992 1.20665 0.94213 0.99066 0.95228 1.20927 1.00578 0.99702 0.94570 1.20731 0.94278 0.99464 1.01168 1.21718 0.99704 1.02619 0.83640 1.41284 1.17784 1.31656 1.09436 1.22174 0.94347 1.06612 0.91060 0.93570 0.78228 0.96449 0.96387 0.90299 0.92876 0.92358 0.91892 0.92322 0.92544 0.91671 0.91052 0.76612 0.82759 0.83964 0.84920 0.83727 0.82015 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.16 5.33 -59.91 -0.32 -18.48 16 10 C 0.16 3.18 5.42 -4.05 -0.02 3.16 16 11 C -0.10 -1.58 2.02 -90.62 -0.18 -1.76 16 12 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.11 -1.56 4.91 -26.73 -0.13 -1.69 16 14 C -0.12 -1.44 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.29 5.77 -26.73 -0.15 -1.44 16 16 C -0.13 -1.59 5.60 -26.73 -0.15 -1.74 16 17 C 0.16 2.20 2.23 -67.93 -0.15 2.05 16 18 H 0.09 1.42 7.57 -51.93 -0.39 1.02 16 19 N -0.71 -9.49 3.60 -54.86 -0.20 -9.69 16 20 C 0.59 8.82 7.78 -12.49 -0.10 8.72 16 21 O -0.54 -9.89 16.58 5.28 0.09 -9.80 16 22 C -0.16 -2.17 6.12 -105.07 -0.64 -2.81 16 23 C -0.13 -1.70 10.78 -38.55 -0.42 -2.11 16 24 C 0.02 0.24 6.70 -84.00 -0.56 -0.33 16 25 C -0.07 -0.62 10.11 -39.28 -0.40 -1.02 16 26 C -0.14 -0.96 10.07 -39.50 -0.40 -1.36 16 27 C -0.14 -0.90 9.97 -39.91 -0.40 -1.30 16 28 C 0.04 0.32 10.89 -16.35 -0.18 0.15 16 29 N -0.34 -3.56 2.92 -60.42 -0.18 -3.74 16 30 C -0.01 -0.09 11.09 -16.16 -0.18 -0.27 16 31 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 33 H 0.02 0.35 7.60 -51.93 -0.39 -0.05 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 1.34 7.18 -51.93 -0.37 0.97 16 36 H 0.05 0.70 6.50 -51.93 -0.34 0.36 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.65 7.60 -51.93 -0.39 0.25 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.40 4.73 5.56 -40.82 -0.23 4.51 16 44 H 0.15 1.84 8.06 -52.48 -0.42 1.41 16 45 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 47 H 0.15 0.54 8.06 -52.48 -0.42 0.12 16 48 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.18 1.48 7.42 -52.49 -0.39 1.10 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -34.12 392.94 -10.86 -44.97 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -7.41 Total: 11.29 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -4.47 Total: -10.62 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.03 Total: -59.24 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.12 -10.86 -44.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483441048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.519 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds