Wall clock time and date at job start Wed Apr 1 2020 01:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99868 * 2 1 4 4 H 1.48504 * 109.47204 * 270.00103 * 3 2 1 5 5 H 1.48499 * 109.47254 * 29.99493 * 3 2 1 6 6 H 1.48491 * 109.47332 * 149.99781 * 3 2 1 7 7 C 1.38810 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99524 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00307 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00520 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47408 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46862 * 55.00859 * 11 10 9 13 13 C 1.52997 * 109.47482 * 295.00294 * 11 10 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 11 16 16 C 1.53002 * 109.46891 * 299.99597 * 15 14 13 17 17 C 1.52997 * 109.46978 * 60.00410 * 16 15 14 18 18 H 1.09000 * 109.47140 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.47204 * 59.99799 * 17 16 15 20 20 C 1.34773 * 119.99955 * 85.00142 * 19 17 16 21 21 O 1.21592 * 120.00012 * 0.02562 * 20 19 17 22 22 C 1.47500 * 119.99682 * 179.97438 * 20 19 17 23 23 C 1.41197 * 126.37171 * 179.97438 * 22 20 19 24 24 C 1.37989 * 106.86947 * 179.97438 * 23 22 20 25 25 C 1.41392 * 131.98592 * 179.97438 * 24 23 22 26 26 C 1.35736 * 119.33289 * 179.97438 * 25 24 23 27 27 C 1.40827 * 119.72039 * 0.02703 * 26 25 24 28 28 C 1.34541 * 120.58088 * 0.02562 * 27 26 25 29 29 N 1.37429 * 120.74573 * 359.97438 * 28 27 26 30 30 C 1.35138 * 131.28717 * 180.33793 * 29 28 27 31 31 H 0.96994 * 120.00308 * 0.02562 * 1 2 3 32 32 H 0.97008 * 119.99663 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.47031 * 59.99926 * 10 9 7 34 34 H 1.09006 * 109.47249 * 300.00762 * 10 9 7 35 35 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 36 36 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 37 37 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47194 * 299.99650 * 14 13 11 39 39 H 1.08992 * 109.47554 * 59.99639 * 15 14 13 40 40 H 1.09004 * 109.47108 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.47097 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.47142 * 300.00176 * 16 15 14 43 43 H 0.97001 * 119.99882 * 265.00024 * 19 17 16 44 44 H 1.08009 * 126.56657 * 359.93935 * 23 22 20 45 45 H 1.08002 * 120.33114 * 359.97438 * 25 24 23 46 46 H 1.07998 * 120.14353 * 180.02562 * 26 25 24 47 47 H 1.08003 * 119.70757 * 180.02562 * 27 26 25 48 48 H 1.08000 * 119.62604 * 179.97438 * 28 27 26 49 49 H 1.07993 * 125.61530 * 359.96077 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3797 -4.7130 -0.8405 13 6 0.2696 -4.8109 1.3088 14 6 -0.7241 -5.9743 1.3096 15 6 0.0372 -7.2954 1.1842 16 6 0.8315 -7.3042 -0.1234 17 6 1.8253 -6.1409 -0.1242 18 1 2.3915 -6.1474 -1.0556 19 7 2.7452 -6.2837 1.0069 20 6 3.8448 -7.0539 0.8882 21 8 4.0736 -7.6298 -0.1580 22 6 4.7713 -7.1971 2.0269 23 6 5.9558 -7.9653 2.0512 24 6 6.5063 -7.8129 3.3073 25 6 7.6775 -8.3414 3.8972 26 6 7.9815 -8.0156 5.1793 27 6 7.1294 -7.1591 5.9029 28 6 6.0161 -6.6612 5.3346 29 7 5.6877 -6.9769 4.0380 30 6 4.6444 -6.6009 3.2657 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 2.6848 -3.7145 0.8905 34 1 2.6849 -3.7145 -0.8894 35 1 -0.2724 -3.8695 1.3983 36 1 0.9541 -4.9176 2.1503 37 1 -1.2903 -5.9677 2.2410 38 1 -1.4086 -5.8680 0.4680 39 1 0.7216 -7.4017 2.0258 40 1 -0.6708 -8.1243 1.1853 41 1 1.3736 -8.2456 -0.2130 42 1 0.1470 -7.1980 -0.9650 43 1 2.5629 -5.8239 1.8414 44 1 6.3544 -8.5590 1.2417 45 1 8.3237 -8.9978 3.3333 46 1 8.8731 -8.4116 5.6427 47 1 7.3717 -6.8997 6.9229 48 1 5.3734 -6.0061 5.9039 49 1 3.8427 -5.9437 3.5681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483441048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:24 Heat of formation + Delta-G solvation = 15.579844 kcal Electronic energy + Delta-G solvation = -29552.856921 eV Core-core repulsion = 25672.453264 eV Total energy + Delta-G solvation = -3880.403657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.18383 -41.26442 -39.23422 -37.29865 -36.45000 -34.67852 -34.00057 -33.70902 -31.59390 -31.22903 -30.24370 -28.68083 -26.98013 -25.33019 -24.67850 -23.74011 -23.24071 -22.67462 -22.01391 -21.13040 -20.01423 -19.26616 -18.65435 -18.21721 -16.99636 -16.84337 -16.68531 -16.53502 -16.22761 -16.13338 -15.85169 -15.33362 -15.26667 -15.14070 -15.03724 -14.82791 -14.57939 -14.36805 -14.00536 -13.44920 -13.39321 -13.10812 -12.97895 -12.90271 -12.79125 -12.71587 -12.57482 -12.43716 -12.20307 -12.12437 -11.91473 -11.84491 -11.44022 -11.40719 -11.18998 -11.06971 -10.99711 -10.84781 -10.03604 -9.54444 -8.98595 -8.36062 -7.95282 -5.23355 -0.17503 0.37305 1.09824 1.46246 1.48002 1.56147 1.69801 2.26999 2.50540 2.55259 2.60802 3.37914 3.53117 3.59197 3.80077 3.83316 3.86198 3.89517 4.04264 4.09856 4.19100 4.25441 4.28863 4.39813 4.43604 4.49490 4.50920 4.59791 4.61184 4.70601 4.75810 4.90458 4.92348 4.94840 5.03899 5.10702 5.19408 5.24365 5.28730 5.30482 5.32372 5.36459 5.42680 5.47672 5.48976 5.54018 5.63209 5.67166 5.88138 6.27229 6.28377 6.60964 7.28247 7.34215 8.09420 8.34805 9.27952 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.003064 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.085242 B = 9135.579735 C =11062.928966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.162 3.838 11 C -0.087 4.087 12 H 0.079 0.921 13 C -0.104 4.104 14 C -0.113 4.113 15 C -0.108 4.108 16 C -0.122 4.122 17 C 0.162 3.838 18 H 0.065 0.935 19 N -0.701 5.701 20 C 0.586 3.414 21 O -0.585 6.585 22 C -0.190 4.190 23 C -0.170 4.170 24 C 0.019 3.981 25 C -0.100 4.100 26 C -0.123 4.123 27 C -0.131 4.131 28 C 0.022 3.978 29 N -0.341 5.341 30 C -0.007 4.007 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.024 0.976 34 H 0.001 0.999 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.407 0.593 44 H 0.146 0.854 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.181 0.819 48 H 0.190 0.810 49 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.028 -19.999 15.278 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.035 3.965 11 C -0.106 4.106 12 H 0.097 0.903 13 C -0.142 4.142 14 C -0.151 4.151 15 C -0.145 4.145 16 C -0.161 4.161 17 C 0.057 3.943 18 H 0.083 0.917 19 N -0.352 5.352 20 C 0.375 3.625 21 O -0.466 6.466 22 C -0.198 4.198 23 C -0.194 4.194 24 C -0.086 4.086 25 C -0.118 4.118 26 C -0.143 4.143 27 C -0.150 4.150 28 C -0.095 4.095 29 N -0.004 5.004 30 C -0.141 4.141 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.041 0.959 34 H 0.019 0.981 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.244 0.756 44 H 0.164 0.836 45 H 0.175 0.825 46 H 0.181 0.819 47 H 0.198 0.802 48 H 0.207 0.793 49 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 10.302 -20.178 14.786 27.054 hybrid contribution -0.081 1.442 -0.297 1.474 sum 10.221 -18.737 14.490 25.797 Atomic orbital electron populations 1.69796 1.06410 1.26070 1.59386 1.25490 0.96381 1.00808 1.03653 0.85195 0.77758 0.79777 0.77365 1.21684 1.21836 1.19631 1.19568 0.91268 0.85552 1.41364 0.91337 1.42510 1.05628 1.00791 1.89251 1.20731 0.93618 0.85072 0.97060 1.21449 0.96848 0.92307 1.00044 0.90307 1.21452 0.97975 0.98836 0.95902 1.21529 0.97410 0.93598 1.02518 1.21444 0.98697 0.97553 0.96849 1.21847 0.97519 0.97099 0.99613 1.20803 0.89817 0.94408 0.89271 0.91651 1.45841 1.23349 1.49034 1.17005 1.17691 0.80331 0.78030 0.86453 1.90717 1.75811 1.49287 1.30790 1.19594 0.99405 1.06552 0.94258 1.21143 0.96552 1.05336 0.96361 1.19109 0.96166 1.00755 0.92589 1.20959 0.94009 1.00387 0.96460 1.21421 1.01077 0.98101 0.93701 1.21278 0.93194 0.98004 1.02560 1.22394 1.00965 1.03471 0.82662 1.41492 1.17330 1.31194 1.10368 1.22383 0.95001 1.06400 0.90352 0.93935 0.79044 0.95852 0.98093 0.93058 0.91664 0.90722 0.91934 0.91888 0.90663 0.92433 0.90277 0.75578 0.83624 0.82457 0.81859 0.80201 0.79271 0.78396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.69 13.06 21.65 0.28 -58.40 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 3 Si 0.97 46.36 29.55 68.60 2.03 48.38 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -37.45 5.33 -343.46 -1.83 -39.28 16 10 C 0.16 6.59 5.42 86.38 0.47 7.06 16 11 C -0.09 -2.75 2.02 -10.79 -0.02 -2.77 16 12 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 13 C -0.10 -2.90 4.91 30.59 0.15 -2.75 16 14 C -0.11 -2.48 5.92 30.59 0.18 -2.30 16 15 C -0.11 -2.19 5.77 30.59 0.18 -2.01 16 16 C -0.12 -2.97 5.60 30.59 0.17 -2.79 16 17 C 0.16 4.67 2.23 44.99 0.10 4.77 16 18 H 0.07 2.21 7.57 -2.39 -0.02 2.19 16 19 N -0.70 -18.97 3.60 -445.73 -1.61 -20.58 16 20 C 0.59 18.42 7.78 86.69 0.67 19.09 16 21 O -0.58 -22.67 16.58 -4.01 -0.07 -22.74 16 22 C -0.19 -5.23 6.12 -20.15 -0.12 -5.35 16 23 C -0.17 -4.56 10.78 22.94 0.25 -4.31 16 24 C 0.02 0.42 6.70 38.90 0.26 0.68 16 25 C -0.10 -1.55 10.11 22.47 0.23 -1.32 16 26 C -0.12 -1.29 10.07 22.32 0.22 -1.07 16 27 C -0.13 -1.21 9.97 22.06 0.22 -0.99 16 28 C 0.02 0.28 10.89 82.97 0.90 1.18 16 29 N -0.34 -6.72 2.92 -345.07 -1.01 -7.72 16 30 C -0.01 -0.16 11.09 84.14 0.93 0.78 16 31 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.38 20.00 6.85 -92.70 -0.64 19.37 16 33 H 0.02 0.94 7.60 -2.39 -0.02 0.92 16 34 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 35 H 0.05 1.74 7.18 -2.39 -0.02 1.73 16 36 H 0.06 1.64 6.50 -2.39 -0.02 1.62 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.25 7.60 -2.39 -0.02 1.23 16 40 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.41 9.44 5.56 -92.71 -0.52 8.93 16 44 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 45 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 46 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 47 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 48 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 49 H 0.20 3.03 7.42 -2.91 -0.02 3.01 16 Total: -1.00 -75.94 392.94 3.71 -72.23 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.19 Total: 36.86 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 6.10 Total: -8.75 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -4.16 Total: -125.99 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.07 Total: -22.74 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -75.94 3.71 -72.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483441048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.807 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds