Wall clock time and date at job start Wed Apr 1 2020 00:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00196 * 2 1 4 4 H 1.48496 * 109.47140 * 239.99746 * 3 2 1 5 5 H 1.48499 * 109.47249 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47270 * 119.99646 * 3 2 1 7 7 C 1.38813 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99952 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00020 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00117 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47288 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46777 * 65.00173 * 11 10 9 13 13 N 1.46499 * 109.47515 * 305.00452 * 11 10 9 14 14 C 1.34769 * 120.00040 * 154.99846 * 13 11 10 15 15 O 1.21278 * 120.00384 * 359.97438 * 14 13 11 16 16 C 1.50698 * 119.99926 * 180.02562 * 14 13 11 17 17 C 1.53000 * 109.47435 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47466 * 179.97438 * 17 16 14 19 19 C 1.34239 * 126.50397 * 265.00379 * 18 17 16 20 20 N 1.36834 * 109.92851 * 180.02562 * 19 18 17 21 21 H 0.96999 * 125.05933 * 180.02562 * 20 19 18 22 22 C 1.37684 * 109.87550 * 359.97438 * 20 19 18 23 23 C 1.39123 * 133.50709 * 179.97438 * 22 20 19 24 24 C 1.37755 * 119.77684 * 180.02562 * 23 22 20 25 25 C 1.38833 * 120.66853 * 359.97438 * 24 23 22 26 26 C 1.36628 * 120.52451 * 359.97438 * 25 24 23 27 27 C 1.39623 * 119.76540 * 359.97438 * 26 25 24 28 28 C 1.53001 * 109.47368 * 184.99896 * 11 10 9 29 29 C 1.52998 * 117.50127 * 248.75133 * 28 11 10 30 30 C 1.52999 * 117.50131 * 180.08883 * 28 11 10 31 31 H 0.97001 * 119.99734 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00007 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47048 * 59.99672 * 10 9 7 34 34 H 1.09001 * 109.47257 * 300.00062 * 10 9 7 35 35 H 0.96998 * 119.99478 * 334.99693 * 13 11 10 36 36 H 1.08997 * 109.47684 * 59.99834 * 16 14 13 37 37 H 1.09008 * 109.47192 * 299.99804 * 16 14 13 38 38 H 1.09004 * 109.47397 * 59.99907 * 17 16 14 39 39 H 1.08998 * 109.47265 * 299.99811 * 17 16 14 40 40 H 1.07992 * 125.03293 * 359.97360 * 19 18 17 41 41 H 1.07996 * 120.11326 * 0.31780 * 23 22 20 42 42 H 1.08001 * 119.66142 * 179.97438 * 24 23 22 43 43 H 1.07992 * 119.73662 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.11150 * 179.97438 * 26 25 24 45 45 H 1.08999 * 115.54714 * 34.42247 * 28 11 10 46 46 H 1.09000 * 117.50142 * 0.02562 * 29 28 11 47 47 H 1.09003 * 117.50134 * 145.01703 * 29 28 11 48 48 H 1.08994 * 117.50068 * 214.98317 * 30 28 11 49 49 H 1.09000 * 117.49973 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4972 -4.8138 -0.9300 13 7 0.1446 -4.6758 1.1328 14 6 -1.0798 -5.2366 1.0820 15 8 -1.4210 -5.8601 0.0992 16 6 -2.0255 -5.0881 2.2459 17 6 -3.3365 -5.8125 1.9335 18 6 -4.2820 -5.6645 3.0976 19 6 -4.4534 -6.5373 4.1031 20 7 -5.3958 -6.0647 4.9753 21 1 -5.6889 -6.5206 5.7798 22 6 -5.8653 -4.8451 4.5416 23 6 -6.8068 -3.9495 5.0385 24 6 -7.0642 -2.7798 4.3580 25 6 -6.3927 -2.4838 3.1795 26 6 -5.4634 -3.3486 2.6742 27 6 -5.1861 -4.5395 3.3483 28 6 1.8246 -6.1412 0.1269 29 6 1.8337 -7.0696 -1.0892 30 6 1.0020 -7.4311 0.1440 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.6847 -3.7146 0.8905 34 1 2.6847 -3.7146 -0.8894 35 1 0.4173 -4.1769 1.9187 36 1 -2.2271 -4.0308 2.4177 37 1 -1.5742 -5.5217 3.1384 38 1 -3.1353 -6.8699 1.7615 39 1 -3.7877 -5.3787 1.0412 40 1 -3.9262 -7.4740 4.2076 41 1 -7.3307 -4.1683 5.9572 42 1 -7.7958 -2.0861 4.7452 43 1 -6.6065 -1.5626 2.6580 44 1 -4.9453 -3.1118 1.7567 45 1 2.7235 -6.1093 0.7425 46 1 1.2980 -6.7388 -1.9790 47 1 2.7385 -7.6488 -1.2735 48 1 1.3599 -8.2480 0.7706 49 1 -0.0813 -7.3384 0.0662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483604860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:19 Heat of formation + Delta-G solvation = 48.247539 kcal Electronic energy + Delta-G solvation = -28883.908272 eV Core-core repulsion = 25004.921193 eV Total energy + Delta-G solvation = -3878.987080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33603 -39.69889 -37.24035 -36.93773 -34.95961 -34.04180 -33.29831 -31.28233 -30.83282 -29.39347 -28.78261 -27.74031 -24.49786 -23.73954 -22.89087 -22.09976 -21.81704 -21.46009 -20.34967 -19.87446 -19.30056 -17.88855 -17.25653 -16.51577 -16.42827 -15.97464 -15.56106 -15.36047 -14.94933 -14.61716 -14.48442 -14.21394 -14.00523 -13.78125 -13.56007 -13.13876 -13.10098 -12.83593 -12.52804 -12.41011 -11.99089 -11.93125 -11.70300 -11.67824 -11.59649 -11.18435 -10.99742 -10.93737 -10.88030 -10.78065 -10.63596 -10.19651 -10.06612 -9.90437 -9.68456 -9.65495 -9.32600 -8.89160 -8.52062 -8.27769 -7.69417 -6.94401 -5.76460 -3.06185 1.08092 1.59451 2.57572 3.00964 3.04337 3.43948 3.48542 3.49615 3.54495 3.89526 4.21075 4.57302 4.65998 4.72133 4.89915 4.93402 5.06199 5.13521 5.19086 5.22040 5.27183 5.30648 5.42451 5.46651 5.53697 5.56697 5.58345 5.76160 5.79041 5.85749 5.87277 5.89160 5.96155 5.98746 6.12471 6.23571 6.26950 6.29148 6.40781 6.46192 6.54907 6.56678 6.59464 6.67931 6.73314 6.75931 7.03263 7.11748 7.41289 7.68944 7.98723 8.41458 8.66985 9.53201 10.09131 10.44862 11.45746 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007838 B = 0.003170 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.296474 B = 8831.700231 C =11942.106123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.087 0.913 13 N -0.709 5.709 14 C 0.517 3.483 15 O -0.550 6.550 16 C -0.135 4.135 17 C -0.026 4.026 18 C -0.161 4.161 19 C 0.046 3.954 20 N -0.598 5.598 21 H 0.413 0.587 22 C 0.094 3.906 23 C -0.137 4.137 24 C -0.098 4.098 25 C -0.148 4.148 26 C -0.064 4.064 27 C -0.102 4.102 28 C -0.162 4.162 29 C -0.172 4.172 30 C -0.185 4.185 31 H 0.256 0.744 32 H 0.386 0.614 33 H 0.024 0.976 34 H 0.034 0.966 35 H 0.404 0.596 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.168 0.832 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 -15.187 10.905 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.105 0.895 13 N -0.358 5.358 14 C 0.304 3.696 15 O -0.429 6.429 16 C -0.175 4.175 17 C -0.065 4.065 18 C -0.168 4.168 19 C -0.079 4.079 20 N -0.201 5.201 21 H 0.249 0.751 22 C -0.013 4.013 23 C -0.158 4.158 24 C -0.118 4.118 25 C -0.167 4.167 26 C -0.082 4.082 27 C -0.106 4.106 28 C -0.181 4.181 29 C -0.210 4.210 30 C -0.222 4.222 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.041 0.959 34 H 0.051 0.949 35 H 0.238 0.762 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.186 0.814 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.119 0.881 46 H 0.112 0.888 47 H 0.107 0.893 48 H 0.099 0.901 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.412 -15.571 10.298 21.375 hybrid contribution 0.331 1.039 0.892 1.409 sum -10.081 -14.532 11.190 20.929 Atomic orbital electron populations 1.69658 1.05063 1.25786 1.57322 1.24737 0.95501 0.97638 1.02824 0.86276 0.78525 0.83583 0.77818 1.21295 1.21685 1.21292 1.19164 0.90980 0.84091 1.43235 0.91246 1.42331 1.05998 0.99680 1.89572 1.20910 0.93072 0.85205 0.98821 1.20762 0.90206 0.92532 0.90154 0.89538 1.45990 1.14692 1.54492 1.20642 1.20608 0.82122 0.78211 0.88663 1.90589 1.76219 1.42014 1.34101 1.21654 0.95074 1.03740 0.97040 1.19608 0.91251 1.00983 0.94613 1.20331 1.02342 0.94951 0.99158 1.21603 0.94835 1.00082 0.91418 1.41685 1.36560 1.17707 1.24156 0.75052 1.18262 0.98931 0.87906 0.96209 1.19973 0.99764 0.94709 1.01324 1.20809 0.99645 0.95938 0.95378 1.20680 0.98487 1.00300 0.97277 1.20415 0.96600 0.91994 0.99195 1.19129 0.99473 0.96129 0.95886 1.22648 1.01401 0.91576 1.02524 1.22889 1.01989 1.03267 0.92848 1.23263 1.00774 0.97416 1.00726 0.93436 0.77972 0.95871 0.94855 0.76183 0.88597 0.89402 0.90709 0.90341 0.81436 0.86605 0.85965 0.85938 0.85661 0.88061 0.88779 0.89344 0.90064 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -18.09 5.43 -59.91 -0.33 -18.42 16 10 C 0.15 2.91 5.80 -4.05 -0.02 2.88 16 11 C 0.17 2.86 2.43 -67.93 -0.17 2.69 16 12 H 0.09 1.68 7.34 -51.93 -0.38 1.30 16 13 N -0.71 -11.23 4.50 -53.81 -0.24 -11.47 16 14 C 0.52 8.08 7.16 -10.99 -0.08 8.00 16 15 O -0.55 -9.95 13.01 5.56 0.07 -9.88 16 16 C -0.13 -1.71 5.68 -27.88 -0.16 -1.87 16 17 C -0.03 -0.32 5.03 -27.88 -0.14 -0.46 16 18 C -0.16 -1.89 5.57 -102.71 -0.57 -2.46 16 19 C 0.05 0.43 11.73 -16.73 -0.20 0.23 16 20 N -0.60 -5.29 6.07 -10.65 -0.06 -5.35 16 21 H 0.41 2.29 8.96 -40.82 -0.37 1.92 16 22 C 0.09 1.07 7.28 -83.99 -0.61 0.46 16 23 C -0.14 -1.41 10.08 -39.43 -0.40 -1.80 16 24 C -0.10 -1.02 10.01 -39.54 -0.40 -1.42 16 25 C -0.15 -1.73 9.97 -39.94 -0.40 -2.13 16 26 C -0.06 -0.83 10.05 -39.65 -0.40 -1.23 16 27 C -0.10 -1.32 6.35 -105.14 -0.67 -1.99 16 28 C -0.16 -2.32 5.36 -90.62 -0.49 -2.80 16 29 C -0.17 -2.30 10.18 -26.69 -0.27 -2.58 16 30 C -0.18 -2.53 9.74 -26.69 -0.26 -2.79 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.39 10.19 7.33 -40.82 -0.30 9.89 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.40 6.16 8.60 -40.82 -0.35 5.80 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 40 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 46 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.12 1.86 5.02 -51.93 -0.26 1.60 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -33.00 405.76 -11.75 -44.74 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -7.54 Total: 18.68 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -5.47 Total: -14.53 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: 0.09 Total: -62.35 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.00 -11.75 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483604860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.989 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds