Wall clock time and date at job start Wed Apr 1 2020 00:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00196 * 2 1 4 4 H 1.48496 * 109.47140 * 239.99746 * 3 2 1 5 5 H 1.48499 * 109.47249 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47270 * 119.99646 * 3 2 1 7 7 C 1.38813 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99952 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00020 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00117 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47288 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46777 * 65.00173 * 11 10 9 13 13 N 1.46499 * 109.47515 * 305.00452 * 11 10 9 14 14 C 1.34769 * 120.00040 * 154.99846 * 13 11 10 15 15 O 1.21278 * 120.00384 * 359.97438 * 14 13 11 16 16 C 1.50698 * 119.99926 * 180.02562 * 14 13 11 17 17 C 1.53000 * 109.47435 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47466 * 179.97438 * 17 16 14 19 19 C 1.34239 * 126.50397 * 265.00379 * 18 17 16 20 20 N 1.36834 * 109.92851 * 180.02562 * 19 18 17 21 21 H 0.96999 * 125.05933 * 180.02562 * 20 19 18 22 22 C 1.37684 * 109.87550 * 359.97438 * 20 19 18 23 23 C 1.39123 * 133.50709 * 179.97438 * 22 20 19 24 24 C 1.37755 * 119.77684 * 180.02562 * 23 22 20 25 25 C 1.38833 * 120.66853 * 359.97438 * 24 23 22 26 26 C 1.36628 * 120.52451 * 359.97438 * 25 24 23 27 27 C 1.39623 * 119.76540 * 359.97438 * 26 25 24 28 28 C 1.53001 * 109.47368 * 184.99896 * 11 10 9 29 29 C 1.52998 * 117.50127 * 248.75133 * 28 11 10 30 30 C 1.52999 * 117.50131 * 180.08883 * 28 11 10 31 31 H 0.97001 * 119.99734 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00007 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47048 * 59.99672 * 10 9 7 34 34 H 1.09001 * 109.47257 * 300.00062 * 10 9 7 35 35 H 0.96998 * 119.99478 * 334.99693 * 13 11 10 36 36 H 1.08997 * 109.47684 * 59.99834 * 16 14 13 37 37 H 1.09008 * 109.47192 * 299.99804 * 16 14 13 38 38 H 1.09004 * 109.47397 * 59.99907 * 17 16 14 39 39 H 1.08998 * 109.47265 * 299.99811 * 17 16 14 40 40 H 1.07992 * 125.03293 * 359.97360 * 19 18 17 41 41 H 1.07996 * 120.11326 * 0.31780 * 23 22 20 42 42 H 1.08001 * 119.66142 * 179.97438 * 24 23 22 43 43 H 1.07992 * 119.73662 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.11150 * 179.97438 * 26 25 24 45 45 H 1.08999 * 115.54714 * 34.42247 * 28 11 10 46 46 H 1.09000 * 117.50142 * 0.02562 * 29 28 11 47 47 H 1.09003 * 117.50134 * 145.01703 * 29 28 11 48 48 H 1.08994 * 117.50068 * 214.98317 * 30 28 11 49 49 H 1.09000 * 117.49973 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4972 -4.8138 -0.9300 13 7 0.1446 -4.6758 1.1328 14 6 -1.0798 -5.2366 1.0820 15 8 -1.4210 -5.8601 0.0992 16 6 -2.0255 -5.0881 2.2459 17 6 -3.3365 -5.8125 1.9335 18 6 -4.2820 -5.6645 3.0976 19 6 -4.4534 -6.5373 4.1031 20 7 -5.3958 -6.0647 4.9753 21 1 -5.6889 -6.5206 5.7798 22 6 -5.8653 -4.8451 4.5416 23 6 -6.8068 -3.9495 5.0385 24 6 -7.0642 -2.7798 4.3580 25 6 -6.3927 -2.4838 3.1795 26 6 -5.4634 -3.3486 2.6742 27 6 -5.1861 -4.5395 3.3483 28 6 1.8246 -6.1412 0.1269 29 6 1.8337 -7.0696 -1.0892 30 6 1.0020 -7.4311 0.1440 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.6847 -3.7146 0.8905 34 1 2.6847 -3.7146 -0.8894 35 1 0.4173 -4.1769 1.9187 36 1 -2.2271 -4.0308 2.4177 37 1 -1.5742 -5.5217 3.1384 38 1 -3.1353 -6.8699 1.7615 39 1 -3.7877 -5.3787 1.0412 40 1 -3.9262 -7.4740 4.2076 41 1 -7.3307 -4.1683 5.9572 42 1 -7.7958 -2.0861 4.7452 43 1 -6.6065 -1.5626 2.6580 44 1 -4.9453 -3.1118 1.7567 45 1 2.7235 -6.1093 0.7425 46 1 1.2980 -6.7388 -1.9790 47 1 2.7385 -7.6488 -1.2735 48 1 1.3599 -8.2480 0.7706 49 1 -0.0813 -7.3384 0.0662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483604860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:19 Heat of formation + Delta-G solvation = 28.890077 kcal Electronic energy + Delta-G solvation = -28884.747675 eV Core-core repulsion = 25004.921193 eV Total energy + Delta-G solvation = -3879.826482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.14466 -40.99553 -38.48463 -37.77739 -36.59285 -35.01994 -34.90406 -32.99639 -31.93339 -30.26625 -29.96925 -29.05034 -26.06909 -25.14594 -23.71718 -23.24444 -23.02630 -22.63988 -21.57665 -21.17538 -20.18428 -19.23040 -18.70525 -17.78280 -17.33769 -17.21453 -16.71432 -16.64416 -16.29640 -15.90270 -15.54112 -15.43311 -15.12562 -14.91412 -14.83820 -14.67847 -14.46590 -14.09717 -13.81580 -13.30723 -13.23332 -13.16079 -12.97767 -12.74594 -12.67601 -12.57739 -12.52522 -12.42472 -12.22996 -12.10767 -11.91579 -11.83956 -11.56240 -11.21764 -11.06170 -10.96403 -10.70181 -10.42368 -9.85273 -9.11460 -9.00771 -8.51533 -7.93237 -5.23173 0.24059 0.72060 1.48390 1.51184 1.57329 1.74131 1.77785 2.27023 2.35348 2.56848 3.00429 3.08276 3.40704 3.61617 3.82508 3.88672 3.94740 4.01556 4.14461 4.19785 4.21128 4.23722 4.30917 4.33926 4.44873 4.50257 4.53085 4.57853 4.66952 4.75441 4.78351 4.85335 4.92249 4.92976 5.00362 5.07965 5.10421 5.14811 5.25657 5.32469 5.34577 5.44107 5.50485 5.60881 5.66963 5.73911 5.81895 5.88493 6.26892 6.27947 6.69931 6.79288 7.34310 7.39347 8.07593 8.31910 9.29456 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007838 B = 0.003170 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.296474 B = 8831.700231 C =11942.106123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.179 3.821 12 H 0.054 0.946 13 N -0.707 5.707 14 C 0.514 3.486 15 O -0.577 6.577 16 C -0.123 4.123 17 C -0.014 4.014 18 C -0.197 4.197 19 C 0.073 3.927 20 N -0.584 5.584 21 H 0.432 0.568 22 C 0.079 3.921 23 C -0.132 4.132 24 C -0.107 4.107 25 C -0.157 4.157 26 C -0.097 4.097 27 C -0.128 4.128 28 C -0.164 4.164 29 C -0.168 4.168 30 C -0.178 4.178 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.040 0.960 34 H 0.033 0.967 35 H 0.407 0.593 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.206 0.794 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.129 0.871 44 H 0.106 0.894 45 H 0.120 0.880 46 H 0.079 0.921 47 H 0.114 0.886 48 H 0.105 0.895 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 -16.859 13.345 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.379 4.379 8 H 0.096 0.904 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.074 3.926 12 H 0.073 0.927 13 N -0.357 5.357 14 C 0.302 3.698 15 O -0.458 6.458 16 C -0.163 4.163 17 C -0.052 4.052 18 C -0.204 4.204 19 C -0.054 4.054 20 N -0.188 5.188 21 H 0.272 0.728 22 C -0.029 4.029 23 C -0.152 4.152 24 C -0.126 4.126 25 C -0.176 4.176 26 C -0.116 4.116 27 C -0.133 4.133 28 C -0.184 4.184 29 C -0.206 4.206 30 C -0.215 4.215 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.242 0.758 36 H 0.100 0.900 37 H 0.135 0.865 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.223 0.777 41 H 0.164 0.836 42 H 0.167 0.833 43 H 0.147 0.853 44 H 0.124 0.876 45 H 0.138 0.862 46 H 0.097 0.903 47 H 0.133 0.867 48 H 0.124 0.876 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.539 -17.276 12.768 23.505 hybrid contribution 0.059 1.490 0.118 1.496 sum -9.480 -15.786 12.886 22.475 Atomic orbital electron populations 1.69830 1.06635 1.26054 1.59226 1.25550 0.96297 1.01036 1.03553 0.85225 0.77167 0.79218 0.78200 1.20636 1.22410 1.20084 1.19593 0.91557 0.85152 1.41552 0.90388 1.42505 1.05627 1.00902 1.89526 1.21035 0.93438 0.84025 0.99196 1.20500 0.89611 0.93220 0.89317 0.92729 1.45986 1.14839 1.54544 1.20352 1.21118 0.82120 0.77475 0.89070 1.90579 1.76618 1.43262 1.35317 1.21618 0.94772 1.03195 0.96722 1.19409 0.90929 1.00882 0.94012 1.20300 1.03644 0.96051 1.00435 1.22107 0.93399 1.00150 0.89769 1.41702 1.35770 1.16771 1.24522 0.72839 1.18467 0.99347 0.89109 0.95960 1.20361 0.98921 0.93978 1.01957 1.21135 0.99962 0.96768 0.94775 1.20901 0.98279 1.00307 0.98102 1.20451 0.98167 0.93491 0.99467 1.19430 1.00478 0.96431 0.96946 1.22543 1.01829 0.90172 1.03866 1.22971 1.02756 1.02815 0.92023 1.23213 0.99539 0.97488 1.01229 0.94114 0.79396 0.94247 0.94866 0.75763 0.89989 0.86521 0.89889 0.93396 0.77684 0.83552 0.83298 0.85318 0.87603 0.86242 0.90289 0.86735 0.87642 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.48 13.06 21.65 0.28 -59.20 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 3 Si 0.97 46.05 29.55 68.60 2.03 48.07 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.25 -13.64 9.99 84.03 0.84 -12.80 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -37.38 5.43 -343.46 -1.87 -39.24 16 10 C 0.15 5.86 5.80 86.38 0.50 6.36 16 11 C 0.18 6.13 2.43 44.99 0.11 6.24 16 12 H 0.05 2.23 7.34 -2.38 -0.02 2.21 16 13 N -0.71 -22.81 4.50 -442.55 -1.99 -24.80 16 14 C 0.51 16.59 7.16 87.66 0.63 17.21 16 15 O -0.58 -21.82 13.01 -3.02 -0.04 -21.86 16 16 C -0.12 -3.20 5.68 29.85 0.17 -3.03 16 17 C -0.01 -0.35 5.03 29.85 0.15 -0.20 16 18 C -0.20 -4.62 5.57 -18.62 -0.10 -4.73 16 19 C 0.07 1.17 11.73 83.00 0.97 2.14 16 20 N -0.58 -8.78 6.07 -187.61 -1.14 -9.92 16 21 H 0.43 3.26 8.96 -92.71 -0.83 2.43 16 22 C 0.08 1.70 7.28 39.03 0.28 1.99 16 23 C -0.13 -2.47 10.08 22.37 0.23 -2.24 16 24 C -0.11 -2.14 10.01 22.30 0.22 -1.91 16 25 C -0.16 -3.85 9.97 22.04 0.22 -3.63 16 26 C -0.10 -2.79 10.05 22.23 0.22 -2.56 16 27 C -0.13 -3.45 6.35 -20.20 -0.13 -3.58 16 28 C -0.16 -4.48 5.36 -10.79 -0.06 -4.54 16 29 C -0.17 -4.25 10.18 30.62 0.31 -3.94 16 30 C -0.18 -4.60 9.74 30.62 0.30 -4.30 16 31 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.37 20.47 7.33 -92.71 -0.68 19.79 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.41 12.49 8.60 -92.71 -0.80 11.70 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 37 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.08 1.92 8.10 -2.38 -0.02 1.90 16 39 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 40 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 44 H 0.11 3.25 8.06 -2.91 -0.02 3.22 16 45 H 0.12 2.87 8.11 -2.39 -0.02 2.85 16 46 H 0.08 2.24 8.05 -2.39 -0.02 2.22 16 47 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.10 3.01 5.02 -2.39 -0.01 3.00 16 Total: -1.00 -73.61 405.76 1.29 -72.33 By element: Atomic # 1 Polarization: 53.11 SS G_CDS: -1.32 Total: 51.79 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 5.33 Total: -17.18 kcal Atomic # 7 Polarization: -128.45 SS G_CDS: -4.71 Total: -133.16 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.04 Total: -21.86 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -73.61 1.29 -72.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483604860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.216 kcal (2) G-P(sol) polarization free energy of solvation -73.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds