Wall clock time and date at job start Wed Apr 1 2020 00:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 119.99897 * 2 1 4 4 H 1.48498 * 109.46957 * 239.99966 * 3 2 1 5 5 H 1.48507 * 109.47123 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47335 * 119.99877 * 3 2 1 7 7 C 1.38946 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99783 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00498 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00516 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00175 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46845 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99713 * 177.64230 * 13 12 10 15 15 C 1.52997 * 112.84881 * 294.49907 * 14 13 12 16 16 N 1.46505 * 109.47153 * 292.59120 * 15 14 13 17 17 C 1.34773 * 119.99715 * 176.11889 * 16 15 14 18 18 O 1.21277 * 120.00465 * 0.27692 * 17 16 15 19 19 C 1.50707 * 119.99622 * 180.27879 * 17 16 15 20 20 C 1.53005 * 112.84832 * 48.80630 * 19 17 16 21 21 F 1.39899 * 109.47042 * 189.66740 * 20 19 17 22 22 C 1.53772 * 113.61507 * 277.49906 * 19 17 16 23 23 C 1.53777 * 87.08358 * 220.01993 * 22 19 17 24 24 C 1.53780 * 113.61321 * 180.02562 * 19 17 16 25 25 C 1.53781 * 113.69205 * 65.76596 * 14 13 12 26 26 C 1.53788 * 87.08361 * 89.12649 * 25 14 13 27 27 C 1.53781 * 87.07603 * 25.43351 * 26 25 14 28 28 H 0.97000 * 120.00337 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99804 * 359.97438 * 9 7 2 30 30 H 1.09009 * 109.46828 * 60.00070 * 12 10 9 31 31 H 1.08999 * 109.47365 * 300.00166 * 12 10 9 32 32 H 1.00895 * 111.00294 * 301.59318 * 13 12 10 33 33 H 1.09002 * 109.47002 * 172.60016 * 15 14 13 34 34 H 1.09001 * 109.47344 * 52.59708 * 15 14 13 35 35 H 0.96996 * 119.99581 * 356.40256 * 16 15 14 36 36 H 1.08998 * 109.47018 * 309.66372 * 20 19 17 37 37 H 1.09000 * 109.46852 * 69.66921 * 20 19 17 38 38 H 1.09006 * 113.61739 * 334.56860 * 22 19 17 39 39 H 1.08998 * 113.61740 * 105.47316 * 22 19 17 40 40 H 1.09003 * 113.61660 * 270.88496 * 23 22 19 41 41 H 1.08996 * 113.61726 * 139.97776 * 23 22 19 42 42 H 1.08994 * 113.61497 * 254.52903 * 24 19 17 43 43 H 1.09001 * 113.61100 * 25.43383 * 24 19 17 44 44 H 1.08994 * 113.61722 * 203.67551 * 25 14 13 45 45 H 1.08999 * 113.61352 * 334.58103 * 25 14 13 46 46 H 1.08999 * 113.61447 * 270.88652 * 26 25 14 47 47 H 1.08998 * 113.61516 * 139.97812 * 26 25 14 48 48 H 1.09004 * 113.61717 * 220.01991 * 27 26 25 49 49 H 1.09008 * 113.69256 * 89.13089 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1984 -5.9794 0.0027 14 6 1.4990 -7.2700 0.0597 15 6 0.7424 -7.4782 1.3731 16 7 1.7009 -7.6083 2.4734 17 6 1.2594 -7.7215 3.7418 18 8 0.0687 -7.7207 3.9718 19 6 2.2455 -7.8490 4.8743 20 6 3.3565 -6.7986 4.8158 21 9 4.3438 -7.1111 5.7564 22 6 2.7610 -9.2825 5.0838 23 6 2.6596 -9.0143 6.5946 24 6 1.5834 -7.9696 6.2570 25 6 0.6567 -7.5721 -1.1910 26 6 1.9170 -8.2213 -1.7868 27 6 2.3791 -8.4659 -0.3406 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6174 -4.9212 -0.8881 31 1 0.6167 -4.9201 0.8919 32 1 2.8085 -5.9339 -0.7997 33 1 0.1410 -8.3848 1.3062 34 1 0.0918 -6.6233 1.5571 35 1 2.6533 -7.6088 2.2895 36 1 3.7954 -6.7891 3.8181 37 1 2.9399 -5.8164 5.0389 38 1 2.0729 -10.0502 4.7295 39 1 3.7824 -9.4347 4.7349 40 1 3.5653 -8.5855 7.0237 41 1 2.2807 -9.8627 7.1643 42 1 1.6538 -7.0614 6.8555 43 1 0.5735 -8.3783 6.2233 44 1 -0.1544 -8.2776 -1.0112 45 1 0.3317 -6.6790 -1.7247 46 1 2.5499 -7.5236 -2.3353 47 1 1.7156 -9.1376 -2.3417 48 1 3.4446 -8.2943 -0.1877 49 1 2.0397 -9.4156 0.0729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484652698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:11 Heat of formation + Delta-G solvation = -82.399975 kcal Electronic energy + Delta-G solvation = -30809.252079 eV Core-core repulsion = 26493.830474 eV Total energy + Delta-G solvation = -4315.421606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.91918 -40.70259 -39.88944 -38.02507 -37.53292 -34.49873 -34.09899 -33.03441 -31.22562 -29.95418 -27.84619 -26.69814 -25.94976 -25.78318 -24.48608 -24.02357 -22.42510 -20.98101 -19.34090 -19.28268 -18.73476 -17.94062 -17.80663 -16.45669 -16.41917 -16.14951 -15.96489 -15.73666 -15.33686 -15.15233 -14.72615 -14.52678 -14.47835 -14.20059 -14.09271 -13.68084 -13.41376 -13.25972 -12.73211 -12.67921 -12.65829 -12.43725 -12.39251 -12.25010 -11.97579 -11.56150 -11.47470 -11.37116 -11.18895 -11.06999 -10.87510 -10.80744 -10.52071 -10.46386 -10.41892 -10.30580 -10.22843 -9.75632 -9.52691 -9.07557 -8.53387 -8.15289 -7.99267 -6.44028 -3.85266 2.50157 3.06704 3.18138 3.24372 3.28328 3.86311 3.93695 4.02573 4.19447 4.23230 4.23821 4.35860 4.43134 4.56758 4.57196 4.61906 4.68794 4.93192 5.06666 5.08590 5.20001 5.23083 5.29847 5.36761 5.47527 5.47940 5.52436 5.53719 5.57708 5.64493 5.66671 5.69447 5.75851 5.78133 5.92034 5.93802 5.95335 6.01165 6.08885 6.19320 6.24726 6.39209 7.11084 7.46095 7.52395 7.53357 8.02748 8.15979 8.57780 9.14841 9.51027 10.01946 10.73492 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.009425 B = 0.003139 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.994853 B = 8918.760950 C =10759.470597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.048 3.952 13 N -0.639 5.639 14 C 0.080 3.920 15 C 0.141 3.859 16 N -0.710 5.710 17 C 0.531 3.469 18 O -0.539 6.539 19 C -0.144 4.144 20 C 0.088 3.912 21 F -0.207 7.207 22 C -0.115 4.115 23 C -0.145 4.145 24 C -0.111 4.111 25 C -0.169 4.169 26 C -0.141 4.141 27 C -0.131 4.131 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.353 0.647 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.405 0.595 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 -20.324 4.712 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.084 4.084 13 N -0.271 5.271 14 C -0.013 4.013 15 C 0.017 3.983 16 N -0.361 5.361 17 C 0.317 3.683 18 O -0.416 6.416 19 C -0.148 4.148 20 C 0.033 3.967 21 F -0.188 7.188 22 C -0.153 4.153 23 C -0.182 4.182 24 C -0.148 4.148 25 C -0.209 4.209 26 C -0.179 4.179 27 C -0.169 4.169 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.174 0.826 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.241 0.759 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.036 -20.099 5.559 20.953 hybrid contribution -0.228 0.948 -1.131 1.493 sum 1.808 -19.151 4.428 19.739 Atomic orbital electron populations 1.69600 1.05951 1.28338 1.50278 1.25263 0.95623 0.99739 0.97215 0.85923 0.78782 0.80465 0.79085 1.19909 1.20949 1.19847 1.19640 0.93319 0.82218 1.47896 0.87973 1.41851 1.09210 1.04603 1.64146 1.19737 0.88347 0.84618 0.84686 1.90520 1.13671 1.87064 1.55603 1.21695 0.94544 0.90748 1.01430 1.60011 1.19270 0.98552 1.49242 1.22367 0.94706 0.91176 0.93022 1.21283 0.91116 1.01657 0.84238 1.45830 1.10926 1.73606 1.05740 1.19994 0.89047 0.76026 0.83276 1.90694 1.16672 1.50050 1.84134 1.22813 0.96918 0.98731 0.96339 1.21651 0.85446 0.97785 0.91815 1.92727 1.63804 1.94460 1.67803 1.22819 1.01709 0.93247 0.97489 1.23006 1.00114 0.99290 0.95795 1.22842 0.99402 1.00157 0.92432 1.23621 0.97686 1.01617 0.97948 1.22814 0.97547 1.01062 0.96472 1.23046 1.00442 0.97258 0.96119 0.91762 0.77476 0.93511 0.89546 0.82597 0.91267 0.91017 0.75927 0.89630 0.89465 0.89533 0.90340 0.88576 0.91238 0.90792 0.88471 0.89559 0.90857 0.89989 0.91215 0.90439 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -14.03 5.29 -10.97 -0.06 -14.09 16 10 C 0.44 10.04 7.83 -10.99 -0.09 9.96 16 11 O -0.58 -15.21 15.83 5.55 0.09 -15.12 16 12 C 0.05 0.80 5.79 -4.98 -0.03 0.77 16 13 N -0.64 -9.01 6.00 -100.39 -0.60 -9.61 16 14 C 0.08 0.85 0.66 -130.79 -0.09 0.77 16 15 C 0.14 1.63 4.99 -4.04 -0.02 1.61 16 16 N -0.71 -7.95 5.33 -60.29 -0.32 -8.27 16 17 C 0.53 6.74 6.93 -10.98 -0.08 6.67 16 18 O -0.54 -8.74 15.90 5.56 0.09 -8.65 16 19 C -0.14 -1.50 1.26 -154.85 -0.19 -1.69 16 20 C 0.09 0.91 6.96 37.16 0.26 1.17 16 21 F -0.21 -2.30 14.57 2.25 0.03 -2.26 16 22 C -0.11 -0.99 6.96 -25.93 -0.18 -1.17 16 23 C -0.14 -1.25 7.56 -25.94 -0.20 -1.45 16 24 C -0.11 -1.14 6.97 -25.94 -0.18 -1.32 16 25 C -0.17 -1.63 7.17 -25.92 -0.19 -1.81 16 26 C -0.14 -1.23 7.75 -25.92 -0.20 -1.43 16 27 C -0.13 -1.13 6.98 -25.92 -0.18 -1.31 16 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 30 H 0.05 0.72 6.71 -51.92 -0.35 0.37 16 31 H 0.09 1.42 6.49 -51.93 -0.34 1.08 16 32 H 0.35 5.20 7.69 -39.29 -0.30 4.89 16 33 H 0.07 0.75 8.02 -51.93 -0.42 0.33 16 34 H 0.07 0.98 6.52 -51.93 -0.34 0.64 16 35 H 0.41 4.06 7.16 -40.82 -0.29 3.77 16 36 H 0.09 0.82 7.04 -51.93 -0.37 0.45 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 39 H 0.08 0.61 8.06 -51.93 -0.42 0.20 16 40 H 0.10 0.86 6.44 -51.93 -0.33 0.52 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.10 1.10 7.43 -51.93 -0.39 0.71 16 44 H 0.09 0.74 8.02 -51.93 -0.42 0.32 16 45 H 0.07 0.79 6.71 -51.93 -0.35 0.44 16 46 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.09 0.67 8.10 -51.92 -0.42 0.24 16 LS Contribution 394.06 15.07 5.94 5.94 Total: -1.00 -31.72 394.06 -8.22 -39.94 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -7.49 Total: 17.09 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.60 Total: 2.83 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.26 Total: -55.68 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.18 Total: -23.78 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.03 Total: -2.26 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.72 -8.22 -39.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484652698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.461 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds