Wall clock time and date at job start Wed Apr 1 2020 00:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 119.99897 * 2 1 4 4 H 1.48498 * 109.46957 * 239.99966 * 3 2 1 5 5 H 1.48507 * 109.47123 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47335 * 119.99877 * 3 2 1 7 7 C 1.38946 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99783 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00498 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00516 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00175 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46845 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99713 * 177.64230 * 13 12 10 15 15 C 1.52997 * 112.84881 * 294.49907 * 14 13 12 16 16 N 1.46505 * 109.47153 * 292.59120 * 15 14 13 17 17 C 1.34773 * 119.99715 * 176.11889 * 16 15 14 18 18 O 1.21277 * 120.00465 * 0.27692 * 17 16 15 19 19 C 1.50707 * 119.99622 * 180.27879 * 17 16 15 20 20 C 1.53005 * 112.84832 * 48.80630 * 19 17 16 21 21 F 1.39899 * 109.47042 * 189.66740 * 20 19 17 22 22 C 1.53772 * 113.61507 * 277.49906 * 19 17 16 23 23 C 1.53777 * 87.08358 * 220.01993 * 22 19 17 24 24 C 1.53780 * 113.61321 * 180.02562 * 19 17 16 25 25 C 1.53781 * 113.69205 * 65.76596 * 14 13 12 26 26 C 1.53788 * 87.08361 * 89.12649 * 25 14 13 27 27 C 1.53781 * 87.07603 * 25.43351 * 26 25 14 28 28 H 0.97000 * 120.00337 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99804 * 359.97438 * 9 7 2 30 30 H 1.09009 * 109.46828 * 60.00070 * 12 10 9 31 31 H 1.08999 * 109.47365 * 300.00166 * 12 10 9 32 32 H 1.00895 * 111.00294 * 301.59318 * 13 12 10 33 33 H 1.09002 * 109.47002 * 172.60016 * 15 14 13 34 34 H 1.09001 * 109.47344 * 52.59708 * 15 14 13 35 35 H 0.96996 * 119.99581 * 356.40256 * 16 15 14 36 36 H 1.08998 * 109.47018 * 309.66372 * 20 19 17 37 37 H 1.09000 * 109.46852 * 69.66921 * 20 19 17 38 38 H 1.09006 * 113.61739 * 334.56860 * 22 19 17 39 39 H 1.08998 * 113.61740 * 105.47316 * 22 19 17 40 40 H 1.09003 * 113.61660 * 270.88496 * 23 22 19 41 41 H 1.08996 * 113.61726 * 139.97776 * 23 22 19 42 42 H 1.08994 * 113.61497 * 254.52903 * 24 19 17 43 43 H 1.09001 * 113.61100 * 25.43383 * 24 19 17 44 44 H 1.08994 * 113.61722 * 203.67551 * 25 14 13 45 45 H 1.08999 * 113.61352 * 334.58103 * 25 14 13 46 46 H 1.08999 * 113.61447 * 270.88652 * 26 25 14 47 47 H 1.08998 * 113.61516 * 139.97812 * 26 25 14 48 48 H 1.09004 * 113.61717 * 220.01991 * 27 26 25 49 49 H 1.09008 * 113.69256 * 89.13089 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1984 -5.9794 0.0027 14 6 1.4990 -7.2700 0.0597 15 6 0.7424 -7.4782 1.3731 16 7 1.7009 -7.6083 2.4734 17 6 1.2594 -7.7215 3.7418 18 8 0.0687 -7.7207 3.9718 19 6 2.2455 -7.8490 4.8743 20 6 3.3565 -6.7986 4.8158 21 9 4.3438 -7.1111 5.7564 22 6 2.7610 -9.2825 5.0838 23 6 2.6596 -9.0143 6.5946 24 6 1.5834 -7.9696 6.2570 25 6 0.6567 -7.5721 -1.1910 26 6 1.9170 -8.2213 -1.7868 27 6 2.3791 -8.4659 -0.3406 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6174 -4.9212 -0.8881 31 1 0.6167 -4.9201 0.8919 32 1 2.8085 -5.9339 -0.7997 33 1 0.1410 -8.3848 1.3062 34 1 0.0918 -6.6233 1.5571 35 1 2.6533 -7.6088 2.2895 36 1 3.7954 -6.7891 3.8181 37 1 2.9399 -5.8164 5.0389 38 1 2.0729 -10.0502 4.7295 39 1 3.7824 -9.4347 4.7349 40 1 3.5653 -8.5855 7.0237 41 1 2.2807 -9.8627 7.1643 42 1 1.6538 -7.0614 6.8555 43 1 0.5735 -8.3783 6.2233 44 1 -0.1544 -8.2776 -1.0112 45 1 0.3317 -6.6790 -1.7247 46 1 2.5499 -7.5236 -2.3353 47 1 1.7156 -9.1376 -2.3417 48 1 3.4446 -8.2943 -0.1877 49 1 2.0397 -9.4156 0.0729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484652698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:10 Heat of formation + Delta-G solvation = -104.949926 kcal Electronic energy + Delta-G solvation = -30810.229919 eV Core-core repulsion = 26493.830474 eV Total energy + Delta-G solvation = -4316.399445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.78988 -41.64681 -40.85547 -39.79266 -38.44303 -36.03240 -35.49129 -34.34200 -33.23174 -30.82100 -28.88175 -28.09223 -26.76601 -26.67170 -25.83971 -25.18782 -23.27090 -21.89868 -21.09036 -20.19554 -19.92572 -19.61884 -18.73156 -17.83100 -17.39980 -17.08481 -17.00402 -16.72481 -16.60641 -16.33858 -16.05012 -15.87325 -15.70019 -15.59953 -15.21127 -14.82245 -14.55371 -14.31195 -14.13956 -13.70814 -13.57306 -13.46519 -13.40926 -13.22700 -13.17136 -13.07362 -12.92807 -12.54400 -12.44113 -12.20667 -12.14241 -11.99843 -11.67787 -11.60840 -11.50320 -11.30740 -11.18612 -11.11628 -10.75533 -10.35985 -10.06622 -10.02885 -9.35390 -8.47605 -5.96644 1.38714 1.40735 1.50898 1.51630 2.03677 2.14297 2.27555 2.80446 3.19435 3.19719 3.38121 3.40000 3.45588 3.55476 3.64542 3.75087 3.80183 3.83840 3.93961 4.10389 4.25027 4.26282 4.35252 4.44818 4.46985 4.52542 4.57476 4.58963 4.74100 4.77177 4.82962 4.84548 4.86641 4.97350 5.06006 5.07613 5.12282 5.17530 5.19643 5.33610 5.39704 5.42687 5.48066 5.88724 6.07908 6.37583 6.53476 6.57924 7.11041 7.19162 7.54677 8.09081 8.69617 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.009425 B = 0.003139 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.994853 B = 8918.760950 C =10759.470597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.081 0.919 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.617 6.617 12 C 0.066 3.934 13 N -0.645 5.645 14 C 0.077 3.923 15 C 0.142 3.858 16 N -0.701 5.701 17 C 0.530 3.470 18 O -0.578 6.578 19 C -0.144 4.144 20 C 0.090 3.910 21 F -0.209 7.209 22 C -0.106 4.106 23 C -0.136 4.136 24 C -0.118 4.118 25 C -0.166 4.166 26 C -0.137 4.137 27 C -0.118 4.118 28 H 0.277 0.723 29 H 0.394 0.606 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.351 0.649 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.413 0.587 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -21.817 4.383 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.099 0.901 9 N -0.211 5.211 10 C 0.228 3.772 11 O -0.504 6.504 12 C -0.066 4.066 13 N -0.277 5.277 14 C -0.015 4.015 15 C 0.018 3.982 16 N -0.351 5.351 17 C 0.316 3.684 18 O -0.458 6.458 19 C -0.148 4.148 20 C 0.034 3.966 21 F -0.190 7.190 22 C -0.143 4.143 23 C -0.173 4.173 24 C -0.156 4.156 25 C -0.206 4.206 26 C -0.174 4.174 27 C -0.156 4.156 28 H 0.087 0.913 29 H 0.228 0.772 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.171 0.829 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.249 0.751 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.575 -21.616 5.215 22.385 hybrid contribution -0.401 1.358 -1.028 1.750 sum 2.175 -20.258 4.187 20.800 Atomic orbital electron populations 1.69670 1.06917 1.29356 1.50317 1.26045 0.96501 1.02473 0.96274 0.85001 0.77769 0.76642 0.79028 1.19497 1.19647 1.19699 1.19636 0.92740 0.83956 1.49965 0.90091 1.41941 1.09259 1.04836 1.65095 1.20757 0.88257 0.85931 0.82250 1.90488 1.15483 1.87903 1.56498 1.21450 0.94275 0.88437 1.02460 1.59958 1.19176 0.99215 1.49320 1.22434 0.95701 0.90256 0.93084 1.21295 0.91106 1.01239 0.84600 1.45809 1.11301 1.72622 1.05404 1.20365 0.88836 0.75201 0.84004 1.90675 1.18396 1.52031 1.84733 1.22817 0.96461 1.00114 0.95362 1.21637 0.85400 0.97355 0.92164 1.92723 1.63840 1.94448 1.67985 1.22824 1.02404 0.91793 0.97306 1.22957 0.99257 0.99009 0.96090 1.22862 0.99416 1.00675 0.92631 1.23634 0.98487 1.01613 0.96850 1.22791 0.96585 1.01485 0.96583 1.23033 1.00069 0.96661 0.95812 0.91331 0.77232 0.91674 0.89095 0.82860 0.89995 0.93420 0.75068 0.88678 0.90369 0.89098 0.89012 0.88634 0.89881 0.91213 0.89662 0.87986 0.92096 0.90804 0.89495 0.90359 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -29.34 5.29 -306.99 -1.62 -30.97 16 10 C 0.44 20.40 7.83 87.66 0.69 21.08 16 11 O -0.62 -32.76 15.83 -3.07 -0.05 -32.81 16 12 C 0.07 2.19 5.79 85.56 0.50 2.68 16 13 N -0.64 -17.62 6.00 -471.53 -2.83 -20.45 16 14 C 0.08 1.52 0.66 4.05 0.00 1.52 16 15 C 0.14 3.10 4.99 86.38 0.43 3.53 16 16 N -0.70 -14.92 5.33 -463.05 -2.47 -17.39 16 17 C 0.53 13.18 6.93 87.66 0.61 13.79 16 18 O -0.58 -18.91 15.90 -3.02 -0.05 -18.96 16 19 C -0.14 -2.88 1.26 -52.40 -0.07 -2.94 16 20 C 0.09 1.79 6.96 71.98 0.50 2.29 16 21 F -0.21 -4.39 14.57 44.97 0.66 -3.74 16 22 C -0.11 -1.62 6.96 31.12 0.22 -1.41 16 23 C -0.14 -2.14 7.56 31.11 0.24 -1.90 16 24 C -0.12 -2.40 6.97 31.11 0.22 -2.18 16 25 C -0.17 -2.84 7.17 31.12 0.22 -2.62 16 26 C -0.14 -2.02 7.75 31.12 0.24 -1.78 16 27 C -0.12 -1.70 6.98 31.12 0.22 -1.49 16 28 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.39 19.44 7.90 -92.70 -0.73 18.71 16 30 H 0.07 1.94 6.71 -2.38 -0.02 1.93 16 31 H 0.09 2.98 6.49 -2.39 -0.02 2.96 16 32 H 0.35 10.04 7.69 -89.70 -0.69 9.35 16 33 H 0.08 1.61 8.02 -2.39 -0.02 1.59 16 34 H 0.05 1.29 6.52 -2.39 -0.02 1.27 16 35 H 0.41 7.60 7.16 -92.71 -0.66 6.94 16 36 H 0.10 1.70 7.04 -2.39 -0.02 1.69 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 1.35 8.09 -2.38 -0.02 1.33 16 39 H 0.09 1.19 8.06 -2.39 -0.02 1.17 16 40 H 0.10 1.55 6.44 -2.39 -0.02 1.53 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 43 H 0.08 1.95 7.43 -2.39 -0.02 1.93 16 44 H 0.10 1.46 8.02 -2.39 -0.02 1.44 16 45 H 0.06 1.21 6.71 -2.39 -0.02 1.20 16 46 H 0.07 1.23 7.73 -2.39 -0.02 1.21 16 47 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 49 H 0.11 1.21 8.10 -2.38 -0.02 1.19 16 Total: -1.00 -69.16 394.06 0.16 -69.00 By element: Atomic # 1 Polarization: 48.99 SS G_CDS: -1.08 Total: 47.91 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 5.29 Total: 12.32 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -6.64 Total: -118.66 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.10 Total: -51.77 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.66 Total: -3.74 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -69.16 0.16 -69.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484652698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.947 kcal (2) G-P(sol) polarization free energy of solvation -69.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds