Wall clock time and date at job start Wed Apr 1 2020 00:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99953 * 2 1 4 4 H 1.48501 * 109.47117 * 239.99999 * 3 2 1 5 5 H 1.48500 * 109.47068 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47348 * 119.99542 * 3 2 1 7 7 C 1.38814 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00281 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99850 * 186.49266 * 9 7 2 11 11 C 1.53006 * 112.90647 * 290.85995 * 10 9 7 12 12 N 1.46498 * 109.46834 * 310.02719 * 11 10 9 13 13 C 1.34778 * 119.99588 * 174.72138 * 12 11 10 14 14 O 1.21557 * 120.00091 * 359.97438 * 13 12 11 15 15 C 1.47866 * 119.99981 * 180.02562 * 13 12 11 16 16 C 1.39610 * 120.10699 * 359.72125 * 15 13 12 17 17 C 1.37981 * 120.00234 * 179.69886 * 16 15 13 18 18 C 1.38248 * 120.23032 * 0.60393 * 17 16 15 19 19 C 1.38990 * 120.21473 * 359.66957 * 18 17 16 20 20 N 1.39709 * 119.99920 * 180.02562 * 19 18 17 21 21 C 1.48232 * 110.99750 * 119.89051 * 20 19 18 22 22 C 1.51110 * 105.36189 * 144.89704 * 21 20 19 23 23 C 1.30963 * 109.46039 * 343.02138 * 22 21 20 24 24 C 1.48228 * 110.99802 * 233.52289 * 20 19 18 25 25 C 1.38677 * 119.99199 * 0.02884 * 19 18 17 26 26 C 1.53780 * 113.61203 * 62.10968 * 10 9 7 27 27 C 1.53774 * 87.07996 * 89.11784 * 26 10 9 28 28 C 1.53772 * 87.08307 * 25.43335 * 27 26 10 29 29 H 0.97000 * 120.00578 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00562 * 6.49498 * 9 7 2 31 31 H 1.09002 * 109.46876 * 70.03181 * 11 10 9 32 32 H 1.09002 * 109.46417 * 190.02386 * 11 10 9 33 33 H 0.96993 * 120.00320 * 354.71910 * 12 11 10 34 34 H 1.08003 * 119.99906 * 0.02562 * 16 15 13 35 35 H 1.08005 * 119.88747 * 180.27225 * 17 16 15 36 36 H 1.07997 * 119.89146 * 179.70157 * 18 17 16 37 37 H 1.08996 * 110.26607 * 263.87535 * 21 20 19 38 38 H 1.09000 * 110.26231 * 25.92177 * 21 20 19 39 39 H 1.07998 * 125.27522 * 163.04668 * 22 21 20 40 40 H 1.07998 * 125.27484 * 179.97438 * 23 22 21 41 41 H 1.08998 * 110.26701 * 334.07753 * 24 20 19 42 42 H 1.09001 * 110.26474 * 96.13258 * 24 20 19 43 43 H 1.07996 * 120.11021 * 180.02562 * 25 19 18 44 44 H 1.09003 * 113.61872 * 334.56843 * 26 10 9 45 45 H 1.09001 * 113.61339 * 203.66469 * 26 10 9 46 46 H 1.09005 * 113.61501 * 139.98158 * 27 26 10 47 47 H 1.08999 * 113.61427 * 270.88219 * 27 26 10 48 48 H 1.08995 * 113.61837 * 89.11727 * 28 27 26 49 49 H 1.09007 * 113.61350 * 219.93658 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0510 -3.6527 0.1446 11 6 2.9086 -3.9898 -1.0769 12 7 2.0990 -3.8647 -2.2914 13 6 2.6733 -4.0107 -3.5020 14 8 3.8630 -4.2457 -3.5860 15 6 1.8563 -3.8839 -4.7279 16 6 0.4888 -3.6188 -4.6339 17 6 -0.2703 -3.4948 -5.7795 18 6 0.3159 -3.6445 -7.0225 19 6 1.6754 -3.9142 -7.1268 20 7 2.2633 -4.0641 -8.3854 21 6 3.3291 -3.0560 -8.5972 22 6 4.3888 -3.7592 -9.4132 23 6 4.2039 -5.0540 -9.3454 24 6 3.0018 -5.3460 -8.4773 25 6 2.4481 -4.0345 -5.9816 26 6 2.8026 -3.7831 1.4799 27 6 1.5144 -4.3951 2.0549 28 6 1.1678 -4.8191 0.6180 29 1 -0.4851 0.8400 -0.0004 30 1 0.3603 -2.3908 -0.0949 31 1 3.7520 -3.3013 -1.1298 32 1 3.2785 -5.0115 -0.9902 33 1 1.1498 -3.6769 -2.2244 34 1 0.0261 -3.5056 -3.6646 35 1 -1.3272 -3.2853 -5.7047 36 1 -0.2844 -3.5511 -7.9154 37 1 2.9358 -2.2003 -9.1461 38 1 3.7405 -2.7348 -7.6403 39 1 5.1770 -3.2700 -9.9662 40 1 4.8154 -5.7978 -9.8346 41 1 3.3212 -5.6696 -7.4867 42 1 2.3772 -6.1091 -8.9416 43 1 3.5047 -4.2436 -6.0605 44 1 3.0682 -2.8251 1.9269 45 1 3.6392 -4.4809 1.4437 46 1 1.6920 -5.2346 2.7271 47 1 0.8279 -3.6572 2.4700 48 1 1.5574 -5.8001 0.3462 49 1 0.1133 -4.6988 0.3696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484653807.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:39 Heat of formation + Delta-G solvation = 69.736135 kcal Electronic energy + Delta-G solvation = -29504.056832 eV Core-core repulsion = 25626.001568 eV Total energy + Delta-G solvation = -3878.055264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.78029 -39.58619 -38.63101 -37.51841 -34.07762 -33.28692 -32.96172 -31.22296 -30.02828 -28.77232 -28.64071 -27.24955 -25.29478 -24.14059 -23.53830 -23.41205 -21.56694 -21.19051 -19.87303 -19.63335 -18.47350 -17.87828 -17.14542 -16.55082 -16.18609 -15.88980 -15.46086 -15.05702 -14.68095 -14.61656 -14.37555 -14.07761 -13.96647 -13.87193 -13.38591 -13.28672 -13.09678 -13.02234 -12.68418 -12.50343 -12.24770 -11.95265 -11.91260 -11.70655 -11.54866 -11.35012 -11.21095 -11.05161 -10.83996 -10.38795 -10.24953 -10.20033 -10.00196 -9.73818 -9.58865 -9.48148 -9.02115 -8.92043 -8.81156 -8.60703 -8.47403 -7.09392 -5.86412 -3.16608 0.89740 1.17583 1.89932 3.03829 3.39934 3.44637 3.45921 3.54595 3.66078 3.90431 4.41565 4.50987 4.57500 4.82504 4.85253 5.05778 5.15768 5.17022 5.18157 5.22387 5.24030 5.28321 5.29338 5.34357 5.45156 5.48032 5.49184 5.52390 5.68217 5.72988 5.81218 6.01401 6.07665 6.11494 6.17359 6.17858 6.24735 6.29353 6.32654 6.33612 6.36880 6.46534 6.55779 6.61916 6.71858 6.84422 6.97313 7.06126 7.15134 7.67353 7.97282 8.32142 8.59530 9.43566 9.95773 10.31479 11.35339 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.002976 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.181274 B = 9406.192288 C =10309.284636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.699 5.699 10 C 0.172 3.828 11 C 0.120 3.880 12 N -0.692 5.692 13 C 0.551 3.449 14 O -0.554 6.554 15 C -0.115 4.115 16 C -0.081 4.081 17 C -0.119 4.119 18 C -0.072 4.072 19 C 0.059 3.941 20 N -0.466 5.466 21 C 0.051 3.949 22 C -0.166 4.166 23 C -0.169 4.169 24 C 0.051 3.949 25 C -0.093 4.093 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.402 0.598 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.132 0.868 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.390 -11.717 -13.559 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.340 5.340 10 C 0.078 3.922 11 C -0.006 4.006 12 N -0.342 5.342 13 C 0.338 3.662 14 O -0.435 6.435 15 C -0.119 4.119 16 C -0.100 4.100 17 C -0.137 4.137 18 C -0.091 4.091 19 C -0.035 4.035 20 N -0.187 5.187 21 C -0.074 4.074 22 C -0.184 4.184 23 C -0.187 4.187 24 C -0.075 4.075 25 C -0.114 4.114 26 C -0.188 4.188 27 C -0.165 4.165 28 C -0.183 4.183 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.150 0.850 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.861 -11.660 -13.948 18.275 hybrid contribution 0.435 1.154 0.640 1.390 sum 2.296 -10.505 -13.309 17.110 Atomic orbital electron populations 1.69631 1.05020 1.25901 1.57294 1.24708 0.95457 0.97575 1.02549 0.86326 0.78642 0.83638 0.77955 1.21276 1.21689 1.21194 1.19033 0.90989 0.83556 1.43013 0.91288 1.42035 1.06111 0.99084 1.86742 1.20846 0.92609 0.87761 0.90938 1.21877 0.94857 0.99576 0.84332 1.45648 1.13349 1.70097 1.05083 1.18222 0.87099 0.77359 0.83561 1.90720 1.15330 1.50134 1.87280 1.19938 0.94091 1.04247 0.93630 1.21481 0.92749 0.96182 0.99549 1.21087 1.00462 1.00478 0.91711 1.21114 0.93138 0.96867 0.97939 1.18902 0.94018 1.02578 0.87969 1.63325 1.26480 1.03085 1.25780 1.22247 0.89688 0.95884 0.99612 1.23570 0.99361 0.95826 0.99675 1.23554 0.98370 0.97243 0.99573 1.22255 0.93121 0.92725 0.99395 1.21691 1.00528 0.97648 0.91531 1.23250 0.96157 1.01133 0.98292 1.22623 0.98670 0.99730 0.95514 1.23187 1.00017 0.97701 0.97346 0.93412 0.77952 0.91610 0.92665 0.76135 0.84985 0.84842 0.85006 0.89129 0.91479 0.84466 0.84491 0.91475 0.89234 0.85005 0.90521 0.91374 0.92777 0.89928 0.90510 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.36 13.07 55.49 0.73 -25.64 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.06 9.19 -15.06 -0.14 -6.20 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.70 -15.58 4.63 -46.48 -0.22 -15.79 16 10 C 0.17 3.10 0.89 -131.00 -0.12 2.98 16 11 C 0.12 2.17 5.08 -4.04 -0.02 2.15 16 12 N -0.69 -12.15 5.34 -61.24 -0.33 -12.48 16 13 C 0.55 10.08 7.77 -12.32 -0.10 9.98 16 14 O -0.55 -11.69 16.34 5.32 0.09 -11.61 16 15 C -0.12 -1.80 5.87 -104.99 -0.62 -2.41 16 16 C -0.08 -1.09 9.54 -39.16 -0.37 -1.47 16 17 C -0.12 -1.37 10.02 -39.67 -0.40 -1.76 16 18 C -0.07 -0.82 9.96 -39.30 -0.39 -1.22 16 19 C 0.06 0.75 4.91 -83.83 -0.41 0.34 16 20 N -0.47 -5.38 5.58 -171.20 -0.96 -6.34 16 21 C 0.05 0.56 6.47 -4.04 -0.03 0.53 16 22 C -0.17 -1.52 10.94 -35.82 -0.39 -1.91 16 23 C -0.17 -1.51 10.95 -35.81 -0.39 -1.90 16 24 C 0.05 0.52 6.44 -4.04 -0.03 0.50 16 25 C -0.09 -1.35 7.23 -38.97 -0.28 -1.63 16 26 C -0.15 -2.54 7.26 -25.92 -0.19 -2.72 16 27 C -0.13 -2.00 7.99 -25.93 -0.21 -2.20 16 28 C -0.14 -2.19 7.37 -25.93 -0.19 -2.38 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 30 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 31 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 32 H 0.06 0.92 7.97 -51.93 -0.41 0.51 16 33 H 0.40 6.69 6.20 -40.82 -0.25 6.43 16 34 H 0.13 1.70 6.40 -52.48 -0.34 1.36 16 35 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.81 6.74 -51.93 -0.35 0.46 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.07 0.75 6.30 -51.93 -0.33 0.42 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.13 2.00 6.62 -52.49 -0.35 1.65 16 44 H 0.08 1.49 7.73 -51.93 -0.40 1.09 16 45 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 48 H 0.08 1.03 7.98 -51.93 -0.41 0.61 16 49 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 398.33 15.07 6.00 6.00 Total: -1.00 -30.37 398.33 -11.43 -41.79 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -7.36 Total: 16.69 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -4.36 Total: -9.59 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.77 Total: -60.25 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.37 -11.43 -41.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484653807.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.531 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds