Wall clock time and date at job start Wed Apr 1 2020 00:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99953 * 2 1 4 4 H 1.48501 * 109.47117 * 239.99999 * 3 2 1 5 5 H 1.48500 * 109.47068 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47348 * 119.99542 * 3 2 1 7 7 C 1.38814 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00281 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99676 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99850 * 186.49266 * 9 7 2 11 11 C 1.53006 * 112.90647 * 290.85995 * 10 9 7 12 12 N 1.46498 * 109.46834 * 310.02719 * 11 10 9 13 13 C 1.34778 * 119.99588 * 174.72138 * 12 11 10 14 14 O 1.21557 * 120.00091 * 359.97438 * 13 12 11 15 15 C 1.47866 * 119.99981 * 180.02562 * 13 12 11 16 16 C 1.39610 * 120.10699 * 359.72125 * 15 13 12 17 17 C 1.37981 * 120.00234 * 179.69886 * 16 15 13 18 18 C 1.38248 * 120.23032 * 0.60393 * 17 16 15 19 19 C 1.38990 * 120.21473 * 359.66957 * 18 17 16 20 20 N 1.39709 * 119.99920 * 180.02562 * 19 18 17 21 21 C 1.48232 * 110.99750 * 119.89051 * 20 19 18 22 22 C 1.51110 * 105.36189 * 144.89704 * 21 20 19 23 23 C 1.30963 * 109.46039 * 343.02138 * 22 21 20 24 24 C 1.48228 * 110.99802 * 233.52289 * 20 19 18 25 25 C 1.38677 * 119.99199 * 0.02884 * 19 18 17 26 26 C 1.53780 * 113.61203 * 62.10968 * 10 9 7 27 27 C 1.53774 * 87.07996 * 89.11784 * 26 10 9 28 28 C 1.53772 * 87.08307 * 25.43335 * 27 26 10 29 29 H 0.97000 * 120.00578 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00562 * 6.49498 * 9 7 2 31 31 H 1.09002 * 109.46876 * 70.03181 * 11 10 9 32 32 H 1.09002 * 109.46417 * 190.02386 * 11 10 9 33 33 H 0.96993 * 120.00320 * 354.71910 * 12 11 10 34 34 H 1.08003 * 119.99906 * 0.02562 * 16 15 13 35 35 H 1.08005 * 119.88747 * 180.27225 * 17 16 15 36 36 H 1.07997 * 119.89146 * 179.70157 * 18 17 16 37 37 H 1.08996 * 110.26607 * 263.87535 * 21 20 19 38 38 H 1.09000 * 110.26231 * 25.92177 * 21 20 19 39 39 H 1.07998 * 125.27522 * 163.04668 * 22 21 20 40 40 H 1.07998 * 125.27484 * 179.97438 * 23 22 21 41 41 H 1.08998 * 110.26701 * 334.07753 * 24 20 19 42 42 H 1.09001 * 110.26474 * 96.13258 * 24 20 19 43 43 H 1.07996 * 120.11021 * 180.02562 * 25 19 18 44 44 H 1.09003 * 113.61872 * 334.56843 * 26 10 9 45 45 H 1.09001 * 113.61339 * 203.66469 * 26 10 9 46 46 H 1.09005 * 113.61501 * 139.98158 * 27 26 10 47 47 H 1.08999 * 113.61427 * 270.88219 * 27 26 10 48 48 H 1.08995 * 113.61837 * 89.11727 * 28 27 26 49 49 H 1.09007 * 113.61350 * 219.93658 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0510 -3.6527 0.1446 11 6 2.9086 -3.9898 -1.0769 12 7 2.0990 -3.8647 -2.2914 13 6 2.6733 -4.0107 -3.5020 14 8 3.8630 -4.2457 -3.5860 15 6 1.8563 -3.8839 -4.7279 16 6 0.4888 -3.6188 -4.6339 17 6 -0.2703 -3.4948 -5.7795 18 6 0.3159 -3.6445 -7.0225 19 6 1.6754 -3.9142 -7.1268 20 7 2.2633 -4.0641 -8.3854 21 6 3.3291 -3.0560 -8.5972 22 6 4.3888 -3.7592 -9.4132 23 6 4.2039 -5.0540 -9.3454 24 6 3.0018 -5.3460 -8.4773 25 6 2.4481 -4.0345 -5.9816 26 6 2.8026 -3.7831 1.4799 27 6 1.5144 -4.3951 2.0549 28 6 1.1678 -4.8191 0.6180 29 1 -0.4851 0.8400 -0.0004 30 1 0.3603 -2.3908 -0.0949 31 1 3.7520 -3.3013 -1.1298 32 1 3.2785 -5.0115 -0.9902 33 1 1.1498 -3.6769 -2.2244 34 1 0.0261 -3.5056 -3.6646 35 1 -1.3272 -3.2853 -5.7047 36 1 -0.2844 -3.5511 -7.9154 37 1 2.9358 -2.2003 -9.1461 38 1 3.7405 -2.7348 -7.6403 39 1 5.1770 -3.2700 -9.9662 40 1 4.8154 -5.7978 -9.8346 41 1 3.3212 -5.6696 -7.4867 42 1 2.3772 -6.1091 -8.9416 43 1 3.5047 -4.2436 -6.0605 44 1 3.0682 -2.8251 1.9269 45 1 3.6392 -4.4809 1.4437 46 1 1.6920 -5.2346 2.7271 47 1 0.8279 -3.6572 2.4700 48 1 1.5574 -5.8001 0.3462 49 1 0.1133 -4.6988 0.3696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484653807.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:38 Heat of formation + Delta-G solvation = 51.139301 kcal Electronic energy + Delta-G solvation = -29504.863251 eV Core-core repulsion = 25626.001568 eV Total energy + Delta-G solvation = -3878.861683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.79101 -40.89756 -39.96267 -38.62727 -35.52797 -35.18381 -33.90139 -32.33480 -31.85490 -29.80398 -29.44958 -28.64542 -26.72244 -25.82415 -24.81432 -24.45158 -22.93105 -22.18515 -21.18085 -20.36091 -19.82534 -19.22855 -19.03192 -17.56076 -17.37388 -17.06564 -16.73978 -16.39516 -16.25644 -15.91355 -15.67137 -15.48207 -15.11822 -15.07532 -14.79693 -14.68248 -14.32737 -14.06219 -13.87000 -13.72360 -13.24649 -13.07916 -13.01496 -12.94448 -12.91515 -12.88447 -12.54896 -12.37557 -12.28938 -12.17076 -11.99654 -11.66167 -11.43935 -11.21455 -10.94091 -10.80129 -10.65176 -10.19741 -9.92222 -9.76509 -9.46569 -9.00200 -7.94733 -5.21525 -0.21447 0.15756 1.19269 1.43818 1.44905 1.50030 1.78471 2.20309 2.53645 2.73519 2.77387 3.36407 3.60153 3.65310 3.75580 3.79441 3.82251 3.86592 3.94042 4.01589 4.07557 4.17025 4.19734 4.28443 4.42101 4.47489 4.48290 4.56925 4.60785 4.66955 4.77237 4.80749 4.88054 4.90638 4.93483 4.97233 5.12980 5.20688 5.26603 5.30083 5.33201 5.34609 5.38738 5.40140 5.46365 5.61115 5.66812 5.71380 5.84590 6.18620 6.29460 6.55238 7.16696 7.36154 8.08100 8.33453 9.27048 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.002976 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.181274 B = 9406.192288 C =10309.284636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.060 4.060 3 Si 0.952 3.048 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.060 0.940 9 N -0.702 5.702 10 C 0.158 3.842 11 C 0.126 3.874 12 N -0.689 5.689 13 C 0.546 3.454 14 O -0.592 6.592 15 C -0.138 4.138 16 C -0.086 4.086 17 C -0.110 4.110 18 C -0.064 4.064 19 C 0.059 3.941 20 N -0.467 5.467 21 C 0.046 3.954 22 C -0.172 4.172 23 C -0.168 4.168 24 C 0.045 3.955 25 C -0.101 4.101 26 C -0.148 4.148 27 C -0.120 4.120 28 C -0.127 4.127 29 H 0.250 0.750 30 H 0.379 0.621 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.407 0.593 34 H 0.136 0.864 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.053 0.947 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.046 0.954 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.059 0.941 48 H 0.105 0.895 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 -13.164 -14.769 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.253 4.253 3 Si 0.783 3.217 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.354 4.354 8 H 0.078 0.922 9 N -0.342 5.342 10 C 0.066 3.934 11 C 0.000 4.000 12 N -0.338 5.338 13 C 0.335 3.665 14 O -0.475 6.475 15 C -0.142 4.142 16 C -0.105 4.105 17 C -0.128 4.128 18 C -0.082 4.082 19 C -0.035 4.035 20 N -0.188 5.188 21 C -0.080 4.080 22 C -0.190 4.190 23 C -0.186 4.186 24 C -0.081 4.081 25 C -0.122 4.122 26 C -0.188 4.188 27 C -0.158 4.158 28 C -0.165 4.165 29 H 0.059 0.941 30 H 0.212 0.788 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.245 0.755 34 H 0.154 0.846 35 H 0.183 0.817 36 H 0.176 0.824 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.177 0.823 40 H 0.180 0.820 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.133 0.867 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.123 0.877 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.177 -13.134 -15.145 20.081 hybrid contribution 0.693 1.530 0.966 1.938 sum 1.871 -11.604 -14.179 18.417 Atomic orbital electron populations 1.69734 1.05821 1.25806 1.59385 1.25243 0.96150 0.99894 1.04008 0.85544 0.77511 0.81031 0.77638 1.21738 1.21940 1.20841 1.19164 0.90700 0.84939 1.40554 0.92191 1.42038 1.05787 0.99722 1.86672 1.21124 0.93673 0.87327 0.91241 1.21788 0.93925 0.99737 0.84548 1.45634 1.13480 1.69790 1.04893 1.18704 0.86934 0.76421 0.84468 1.90684 1.16962 1.51987 1.87845 1.19822 0.94905 1.06835 0.92639 1.21594 0.91928 0.96256 1.00708 1.21431 1.01754 0.98823 0.90783 1.21456 0.92657 0.95136 0.98985 1.19072 0.94580 1.02057 0.87812 1.63429 1.26887 1.03805 1.24688 1.22308 0.90239 0.96346 0.99118 1.23745 0.99515 0.95921 0.99823 1.23779 0.97917 0.97785 0.99115 1.22346 0.94045 0.92503 0.99171 1.21618 0.99996 0.98512 0.92038 1.23285 0.97789 1.00539 0.97211 1.22538 0.96883 0.99997 0.96345 1.23149 0.99657 0.97413 0.96263 0.94080 0.78753 0.94880 0.90734 0.75549 0.84627 0.81677 0.82449 0.88405 0.93496 0.82286 0.82020 0.92908 0.88018 0.86699 0.93516 0.88786 0.89635 0.92230 0.87661 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.00 13.07 21.65 0.28 -54.71 16 2 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 3 Si 0.95 45.94 29.55 68.60 2.03 47.97 16 4 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.22 -11.63 9.19 84.03 0.77 -10.85 16 8 H 0.06 3.22 7.83 -2.91 -0.02 3.20 16 9 N -0.70 -31.59 4.63 -300.95 -1.39 -32.98 16 10 C 0.16 5.61 0.89 4.13 0.00 5.62 16 11 C 0.13 4.58 5.08 86.38 0.44 5.02 16 12 N -0.69 -24.44 5.34 -465.93 -2.49 -26.93 16 13 C 0.55 20.60 7.77 86.79 0.67 21.27 16 14 O -0.59 -26.03 16.34 -3.89 -0.06 -26.10 16 15 C -0.14 -4.39 5.87 -20.10 -0.12 -4.51 16 16 C -0.09 -2.26 9.54 22.54 0.21 -2.05 16 17 C -0.11 -2.27 10.02 22.21 0.22 -2.05 16 18 C -0.06 -1.32 9.96 22.45 0.22 -1.10 16 19 C 0.06 1.46 4.91 38.17 0.19 1.65 16 20 N -0.47 -10.36 5.58 -695.55 -3.88 -14.25 16 21 C 0.05 0.97 6.47 85.43 0.55 1.52 16 22 C -0.17 -2.92 10.94 25.81 0.28 -2.64 16 23 C -0.17 -2.74 10.95 25.82 0.28 -2.45 16 24 C 0.05 0.89 6.44 85.43 0.55 1.44 16 25 C -0.10 -2.99 7.23 22.67 0.16 -2.83 16 26 C -0.15 -4.92 7.26 31.12 0.23 -4.70 16 27 C -0.12 -3.50 7.99 31.12 0.25 -3.25 16 28 C -0.13 -3.55 7.37 31.12 0.23 -3.32 16 29 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.38 18.05 7.90 -92.71 -0.73 17.32 16 31 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 32 H 0.07 2.41 7.97 -2.39 -0.02 2.39 16 33 H 0.41 13.56 6.20 -92.71 -0.57 12.99 16 34 H 0.14 3.39 6.40 -2.91 -0.02 3.37 16 35 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.18 6.74 -2.39 -0.02 1.17 16 39 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.05 1.20 6.30 -2.39 -0.02 1.19 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.12 3.74 6.62 -2.91 -0.02 3.72 16 44 H 0.05 1.82 7.73 -2.39 -0.02 1.80 16 45 H 0.09 2.62 8.10 -2.39 -0.02 2.60 16 46 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 48 H 0.11 2.40 7.98 -2.39 -0.02 2.39 16 49 H 0.07 1.89 8.10 -2.38 -0.02 1.87 16 Total: -1.00 -67.37 398.33 -0.23 -67.60 By element: Atomic # 1 Polarization: 45.78 SS G_CDS: -0.34 Total: 45.45 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 5.62 Total: -6.05 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -7.48 Total: -128.87 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.06 Total: -26.10 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -67.37 -0.23 -67.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484653807.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.736 kcal (2) G-P(sol) polarization free energy of solvation -67.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds