Wall clock time and date at job start Wed Apr 1 2020 00:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99858 * 2 1 4 4 H 1.48497 * 109.47103 * 239.99494 * 3 2 1 5 5 H 1.48493 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46860 * 120.00031 * 3 2 1 7 7 C 1.38809 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00477 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00592 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47693 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47217 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.88704 * 308.88056 * 12 11 10 14 14 C 1.55158 * 111.03856 * 72.78741 * 12 11 10 15 15 C 1.54316 * 102.94139 * 153.58832 * 14 12 11 16 16 N 1.47020 * 107.27568 * 337.80546 * 15 14 12 17 17 C 1.34776 * 125.65281 * 178.97789 * 16 15 14 18 18 O 1.21279 * 120.00145 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99758 * 359.95767 * 17 16 15 20 20 N 1.46504 * 109.47028 * 180.02562 * 19 17 16 21 21 C 1.36826 * 125.06099 * 264.69731 * 20 19 17 22 22 C 1.34246 * 109.92869 * 179.87654 * 21 20 19 23 23 C 1.46490 * 106.99498 * 0.37436 * 22 21 20 24 24 C 1.39629 * 134.02988 * 179.79286 * 23 22 21 25 25 C 1.36625 * 119.76504 * 179.97438 * 24 23 22 26 26 C 1.38840 * 120.52475 * 359.97438 * 25 24 23 27 27 C 1.37744 * 120.66891 * 0.02562 * 26 25 24 28 28 C 1.37685 * 125.05879 * 85.00066 * 20 19 17 29 29 C 1.47422 * 108.70191 * 358.94070 * 16 15 14 30 30 H 0.96996 * 119.99894 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99480 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47360 * 59.99046 * 10 9 7 33 33 H 1.09009 * 109.46834 * 299.99886 * 10 9 7 34 34 H 1.09006 * 109.46687 * 59.99667 * 11 10 9 35 35 H 1.08997 * 109.46700 * 300.00004 * 11 10 9 36 36 H 1.09003 * 110.71801 * 271.95353 * 14 12 11 37 37 H 1.08999 * 110.71744 * 35.04391 * 14 12 11 38 38 H 1.09000 * 109.88340 * 97.22892 * 15 14 12 39 39 H 1.09005 * 109.88355 * 218.23652 * 15 14 12 40 40 H 1.09004 * 109.47285 * 300.00221 * 19 17 16 41 41 H 1.09000 * 109.46844 * 60.00496 * 19 17 16 42 42 H 1.07995 * 125.03962 * 359.97438 * 21 20 19 43 43 H 1.07999 * 126.49983 * 180.14518 * 22 21 20 44 44 H 1.07998 * 120.11556 * 359.95515 * 24 23 22 45 45 H 1.07992 * 119.73934 * 179.97438 * 25 24 23 46 46 H 1.07998 * 119.66081 * 179.97438 * 26 25 24 47 47 H 1.07997 * 120.10845 * 179.97438 * 27 26 25 48 48 H 1.08998 * 110.36873 * 265.28987 * 29 16 15 49 49 H 1.09005 * 110.36491 * 142.96394 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0021 12 6 1.8290 -6.1447 0.0026 13 1 2.5769 -6.1619 -0.7901 14 6 2.4785 -6.4123 1.3860 15 6 2.5746 -7.9518 1.4308 16 7 1.5807 -8.4789 0.4844 17 6 1.3645 -9.7821 0.2169 18 8 0.5139 -10.1035 -0.5857 19 6 2.1801 -10.8399 0.9148 20 7 1.7574 -12.1650 0.4547 21 6 0.8444 -12.9629 1.0887 22 6 0.6833 -14.1067 0.4046 23 6 1.5721 -14.0392 -0.7579 24 6 1.8514 -14.9045 -1.8176 25 6 2.7581 -14.5380 -2.7716 26 6 3.4040 -13.3113 -2.6964 27 6 3.1435 -12.4425 -1.6597 28 6 2.2243 -12.7954 -0.6769 29 6 0.8589 -7.3460 -0.1230 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6842 -3.7141 0.8921 33 1 2.6854 -3.7149 -0.8879 34 1 0.4376 -4.7626 -0.8882 35 1 0.4370 -4.7614 0.8918 36 1 3.4699 -5.9622 1.4401 37 1 1.8429 -6.0392 2.1891 38 1 3.5741 -8.2697 1.1341 39 1 2.3562 -8.3077 2.4377 40 1 3.2357 -10.6954 0.6849 41 1 2.0289 -10.7635 1.9916 42 1 0.3285 -12.7095 2.0029 43 1 0.0262 -14.9235 0.6644 44 1 1.3527 -15.8603 -1.8826 45 1 2.9741 -15.2078 -3.5907 46 1 4.1186 -13.0360 -3.4579 47 1 3.6515 -11.4908 -1.6099 48 1 -0.0635 -7.1474 0.4226 49 1 0.6437 -7.5517 -1.1716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501651592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:43 Heat of formation + Delta-G solvation = 42.251129 kcal Electronic energy + Delta-G solvation = -28220.012176 eV Core-core repulsion = 24340.765073 eV Total energy + Delta-G solvation = -3879.247103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.67919 -40.20160 -38.07556 -37.09868 -35.22652 -33.43755 -32.91951 -31.13377 -30.60697 -29.70072 -29.12233 -28.10614 -26.58348 -24.01655 -23.18940 -22.86927 -21.85008 -21.55936 -20.67661 -20.28112 -19.54266 -17.73510 -17.44668 -17.15664 -16.76216 -16.26819 -15.70949 -15.55734 -15.18610 -14.74209 -14.40311 -14.28268 -14.05807 -14.03847 -13.73407 -13.47979 -13.32071 -13.22492 -13.02962 -12.87376 -12.77272 -12.46783 -12.27501 -11.84484 -11.80732 -11.71572 -11.40347 -11.12229 -11.07356 -10.84253 -10.72872 -10.56200 -10.39548 -10.31521 -10.07013 -9.82618 -9.70798 -8.95243 -8.88929 -8.37897 -7.89595 -6.94781 -5.78579 -3.07624 0.92914 1.41753 2.17311 2.21005 2.52990 2.82561 3.42119 3.46402 3.47724 3.73298 4.00763 4.22013 4.35363 4.40359 4.51167 4.53801 4.55337 4.59353 4.71932 4.80362 4.91685 4.95818 5.12617 5.21343 5.25386 5.27580 5.42290 5.49956 5.54058 5.57544 5.58738 5.68602 5.71435 5.75141 5.79264 5.84958 5.97266 6.02606 6.18608 6.26040 6.31342 6.32384 6.40900 6.54393 6.55727 6.78815 6.83474 6.94443 7.00006 7.16826 7.66674 7.77675 8.40408 9.51204 10.09559 10.43647 11.44245 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.001648 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.832664 B =16985.716697 C =17328.856459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.094 4.094 13 H 0.085 0.915 14 C -0.127 4.127 15 C 0.095 3.905 16 N -0.616 5.616 17 C 0.505 3.495 18 O -0.520 6.520 19 C 0.097 3.903 20 N -0.470 5.470 21 C 0.059 3.941 22 C -0.202 4.202 23 C -0.108 4.108 24 C -0.072 4.072 25 C -0.149 4.149 26 C -0.100 4.100 27 C -0.125 4.125 28 C 0.109 3.891 29 C 0.110 3.890 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.167 0.833 43 H 0.147 0.853 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.114 0.886 48 H 0.072 0.928 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 -30.705 3.301 31.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.104 0.896 14 C -0.165 4.165 15 C -0.028 4.028 16 N -0.351 5.351 17 C 0.291 3.709 18 O -0.395 6.395 19 C -0.029 4.029 20 N -0.153 5.153 21 C -0.065 4.065 22 C -0.227 4.227 23 C -0.112 4.112 24 C -0.091 4.091 25 C -0.168 4.168 26 C -0.120 4.120 27 C -0.146 4.146 28 C 0.004 3.996 29 C -0.012 4.012 30 H 0.066 0.934 31 H 0.217 0.783 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.184 0.816 43 H 0.165 0.835 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.132 0.868 48 H 0.090 0.910 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.364 -30.546 2.992 31.345 hybrid contribution 0.141 1.209 0.110 1.222 sum 6.505 -29.338 3.102 30.210 Atomic orbital electron populations 1.69647 1.05124 1.25800 1.57635 1.24755 0.95542 0.97739 1.02988 0.86255 0.78516 0.83499 0.77837 1.21265 1.21652 1.21265 1.19183 0.90990 0.84215 1.42887 0.91259 1.42362 1.05900 1.00066 1.89543 1.20616 0.93438 0.85466 0.97713 1.21673 0.98687 0.92454 1.02587 1.22344 0.97458 0.94056 0.97466 0.89617 1.22742 1.02899 0.92545 0.98275 1.22186 0.91934 0.95935 0.92721 1.48547 1.38334 1.05004 1.43250 1.20573 0.84680 0.82251 0.83373 1.90796 1.33715 1.80635 1.34381 1.21540 1.00047 0.80637 1.00657 1.43370 1.36932 1.13685 1.21336 1.21768 0.94232 0.91307 0.99213 1.21648 1.04844 0.99578 0.96627 1.19202 1.00017 0.94627 0.97387 1.20256 0.97449 0.98517 0.92876 1.20615 0.99003 0.97306 0.99849 1.20790 0.99903 0.93949 0.97329 1.20000 0.99602 1.00412 0.94565 1.18190 0.98817 0.93124 0.89508 1.22393 0.95341 0.84240 0.99230 0.93440 0.78305 0.96342 0.96537 0.91471 0.91520 0.89424 0.89919 0.91253 0.91218 0.86799 0.86258 0.81603 0.83521 0.86151 0.86137 0.85852 0.86769 0.90975 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -18.42 5.60 -59.91 -0.34 -18.76 16 10 C 0.16 2.95 6.16 -4.04 -0.02 2.93 16 11 C -0.12 -1.70 4.84 -26.73 -0.13 -1.83 16 12 C -0.09 -1.05 3.00 -88.47 -0.27 -1.32 16 13 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.13 -1.14 5.91 -24.90 -0.15 -1.29 16 15 C 0.10 0.67 6.49 -3.07 -0.02 0.65 16 16 N -0.62 -6.20 3.33 -170.52 -0.57 -6.76 16 17 C 0.51 5.72 7.92 -10.98 -0.09 5.63 16 18 O -0.52 -8.38 16.68 5.56 0.09 -8.29 16 19 C 0.10 0.75 5.67 -5.19 -0.03 0.72 16 20 N -0.47 -4.79 2.27 -115.70 -0.26 -5.05 16 21 C 0.06 0.54 11.27 -16.73 -0.19 0.35 16 22 C -0.20 -1.98 11.08 -37.67 -0.42 -2.40 16 23 C -0.11 -1.24 6.37 -105.13 -0.67 -1.91 16 24 C -0.07 -0.72 10.05 -39.65 -0.40 -1.12 16 25 C -0.15 -1.36 9.97 -39.94 -0.40 -1.76 16 26 C -0.10 -0.95 10.01 -39.54 -0.40 -1.35 16 27 C -0.13 -1.34 10.00 -39.43 -0.39 -1.74 16 28 C 0.11 1.27 6.80 -83.99 -0.57 0.70 16 29 C 0.11 1.26 6.38 -2.53 -0.02 1.24 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 32 H 0.02 0.35 7.75 -51.93 -0.40 -0.06 16 33 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.99 7.97 -51.93 -0.41 0.57 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.12 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 47 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.07 0.84 8.04 -51.93 -0.42 0.43 16 49 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 LS Contribution 406.20 15.07 6.12 6.12 Total: -1.00 -35.92 406.20 -11.49 -47.41 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.84 Total: 5.43 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -4.40 Total: -9.86 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.44 Total: -58.04 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.92 -11.49 -47.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501651592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.662 kcal (2) G-P(sol) polarization free energy of solvation -35.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds