Wall clock time and date at job start Wed Apr 1 2020 00:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99858 * 2 1 4 4 H 1.48497 * 109.47103 * 239.99494 * 3 2 1 5 5 H 1.48493 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46860 * 120.00031 * 3 2 1 7 7 C 1.38809 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00112 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00477 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00592 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47693 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47217 * 179.97438 * 11 10 9 13 13 H 1.08998 * 110.88704 * 308.88056 * 12 11 10 14 14 C 1.55158 * 111.03856 * 72.78741 * 12 11 10 15 15 C 1.54316 * 102.94139 * 153.58832 * 14 12 11 16 16 N 1.47020 * 107.27568 * 337.80546 * 15 14 12 17 17 C 1.34776 * 125.65281 * 178.97789 * 16 15 14 18 18 O 1.21279 * 120.00145 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99758 * 359.95767 * 17 16 15 20 20 N 1.46504 * 109.47028 * 180.02562 * 19 17 16 21 21 C 1.36826 * 125.06099 * 264.69731 * 20 19 17 22 22 C 1.34246 * 109.92869 * 179.87654 * 21 20 19 23 23 C 1.46490 * 106.99498 * 0.37436 * 22 21 20 24 24 C 1.39629 * 134.02988 * 179.79286 * 23 22 21 25 25 C 1.36625 * 119.76504 * 179.97438 * 24 23 22 26 26 C 1.38840 * 120.52475 * 359.97438 * 25 24 23 27 27 C 1.37744 * 120.66891 * 0.02562 * 26 25 24 28 28 C 1.37685 * 125.05879 * 85.00066 * 20 19 17 29 29 C 1.47422 * 108.70191 * 358.94070 * 16 15 14 30 30 H 0.96996 * 119.99894 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99480 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47360 * 59.99046 * 10 9 7 33 33 H 1.09009 * 109.46834 * 299.99886 * 10 9 7 34 34 H 1.09006 * 109.46687 * 59.99667 * 11 10 9 35 35 H 1.08997 * 109.46700 * 300.00004 * 11 10 9 36 36 H 1.09003 * 110.71801 * 271.95353 * 14 12 11 37 37 H 1.08999 * 110.71744 * 35.04391 * 14 12 11 38 38 H 1.09000 * 109.88340 * 97.22892 * 15 14 12 39 39 H 1.09005 * 109.88355 * 218.23652 * 15 14 12 40 40 H 1.09004 * 109.47285 * 300.00221 * 19 17 16 41 41 H 1.09000 * 109.46844 * 60.00496 * 19 17 16 42 42 H 1.07995 * 125.03962 * 359.97438 * 21 20 19 43 43 H 1.07999 * 126.49983 * 180.14518 * 22 21 20 44 44 H 1.07998 * 120.11556 * 359.95515 * 24 23 22 45 45 H 1.07992 * 119.73934 * 179.97438 * 25 24 23 46 46 H 1.07998 * 119.66081 * 179.97438 * 26 25 24 47 47 H 1.07997 * 120.10845 * 179.97438 * 27 26 25 48 48 H 1.08998 * 110.36873 * 265.28987 * 29 16 15 49 49 H 1.09005 * 110.36491 * 142.96394 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0021 12 6 1.8290 -6.1447 0.0026 13 1 2.5769 -6.1619 -0.7901 14 6 2.4785 -6.4123 1.3860 15 6 2.5746 -7.9518 1.4308 16 7 1.5807 -8.4789 0.4844 17 6 1.3645 -9.7821 0.2169 18 8 0.5139 -10.1035 -0.5857 19 6 2.1801 -10.8399 0.9148 20 7 1.7574 -12.1650 0.4547 21 6 0.8444 -12.9629 1.0887 22 6 0.6833 -14.1067 0.4046 23 6 1.5721 -14.0392 -0.7579 24 6 1.8514 -14.9045 -1.8176 25 6 2.7581 -14.5380 -2.7716 26 6 3.4040 -13.3113 -2.6964 27 6 3.1435 -12.4425 -1.6597 28 6 2.2243 -12.7954 -0.6769 29 6 0.8589 -7.3460 -0.1230 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6842 -3.7141 0.8921 33 1 2.6854 -3.7149 -0.8879 34 1 0.4376 -4.7626 -0.8882 35 1 0.4370 -4.7614 0.8918 36 1 3.4699 -5.9622 1.4401 37 1 1.8429 -6.0392 2.1891 38 1 3.5741 -8.2697 1.1341 39 1 2.3562 -8.3077 2.4377 40 1 3.2357 -10.6954 0.6849 41 1 2.0289 -10.7635 1.9916 42 1 0.3285 -12.7095 2.0029 43 1 0.0262 -14.9235 0.6644 44 1 1.3527 -15.8603 -1.8826 45 1 2.9741 -15.2078 -3.5907 46 1 4.1186 -13.0360 -3.4579 47 1 3.6515 -11.4908 -1.6099 48 1 -0.0635 -7.1474 0.4226 49 1 0.6437 -7.5517 -1.1716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501651592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:42 Heat of formation + Delta-G solvation = 21.634978 kcal Electronic energy + Delta-G solvation = -28220.906160 eV Core-core repulsion = 24340.765073 eV Total energy + Delta-G solvation = -3880.141087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.36870 -41.03231 -39.00034 -37.81881 -36.84524 -34.66091 -33.89467 -32.66428 -31.41077 -30.62263 -29.82756 -29.24247 -27.59134 -25.63845 -24.13865 -23.56625 -23.10772 -22.48955 -21.43331 -21.28069 -20.31055 -19.14697 -18.48375 -18.16838 -17.45732 -17.13789 -16.70295 -16.45354 -16.27604 -16.09186 -15.45920 -15.32409 -15.17516 -15.00648 -14.76898 -14.73594 -14.37274 -14.10352 -13.86058 -13.83427 -13.52693 -13.35577 -13.12437 -13.05641 -12.86787 -12.73755 -12.51952 -12.49228 -12.35980 -12.23704 -11.96843 -11.76170 -11.64781 -11.57398 -11.52042 -11.19112 -10.90764 -10.56594 -9.76723 -9.10104 -9.00007 -8.59112 -7.95397 -5.24567 0.21768 0.68362 1.40182 1.47271 1.48205 1.50704 1.56940 1.87463 2.09614 2.56281 3.00165 3.28171 3.38425 3.57278 3.65084 3.71301 3.74005 3.82175 3.96127 4.06654 4.14125 4.17030 4.27739 4.29856 4.33009 4.44347 4.54804 4.58028 4.58594 4.60188 4.76148 4.77504 4.83159 4.85929 4.92884 4.95860 5.04638 5.07191 5.16871 5.19689 5.28530 5.37937 5.44835 5.49587 5.56040 5.69985 5.84768 5.87185 6.26973 6.27479 6.29763 6.43628 6.96381 7.32865 8.10364 8.31889 9.28074 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.001648 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.832664 B =16985.716697 C =17328.856459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.975 3.025 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.078 0.922 9 N -0.751 5.751 10 C 0.154 3.846 11 C -0.103 4.103 12 C -0.085 4.085 13 H 0.087 0.913 14 C -0.125 4.125 15 C 0.095 3.905 16 N -0.613 5.613 17 C 0.502 3.498 18 O -0.579 6.579 19 C 0.101 3.899 20 N -0.476 5.476 21 C 0.055 3.945 22 C -0.222 4.222 23 C -0.137 4.137 24 C -0.086 4.086 25 C -0.154 4.154 26 C -0.109 4.109 27 C -0.143 4.143 28 C 0.082 3.918 29 C 0.112 3.888 30 H 0.251 0.749 31 H 0.372 0.628 32 H 0.031 0.969 33 H 0.016 0.984 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.159 0.841 42 H 0.197 0.803 43 H 0.163 0.837 44 H 0.137 0.863 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.122 0.878 48 H 0.067 0.933 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.764 -31.598 4.703 33.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.804 3.196 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.379 4.379 8 H 0.096 0.904 9 N -0.393 5.393 10 C 0.028 3.972 11 C -0.141 4.141 12 C -0.104 4.104 13 H 0.105 0.895 14 C -0.162 4.162 15 C -0.026 4.026 16 N -0.347 5.347 17 C 0.291 3.709 18 O -0.459 6.459 19 C -0.024 4.024 20 N -0.159 5.159 21 C -0.068 4.068 22 C -0.246 4.246 23 C -0.142 4.142 24 C -0.105 4.105 25 C -0.173 4.173 26 C -0.128 4.128 27 C -0.164 4.164 28 C -0.023 4.023 29 C -0.011 4.011 30 H 0.060 0.940 31 H 0.204 0.796 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.155 0.845 41 H 0.176 0.824 42 H 0.214 0.786 43 H 0.181 0.819 44 H 0.155 0.845 45 H 0.162 0.838 46 H 0.162 0.838 47 H 0.140 0.860 48 H 0.085 0.915 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.556 -31.459 4.422 32.900 hybrid contribution -0.511 1.445 -0.358 1.574 sum 8.044 -30.014 4.064 31.338 Atomic orbital electron populations 1.69814 1.06694 1.26162 1.59487 1.25615 0.96427 1.01286 1.03708 0.85185 0.77175 0.78974 0.78270 1.20451 1.22250 1.20084 1.19634 0.91595 0.85404 1.41293 0.90449 1.42638 1.05686 1.01514 1.89503 1.20799 0.94057 0.84457 0.97889 1.21499 0.97859 0.92857 1.01897 1.22161 0.97040 0.91771 0.99456 0.89471 1.22753 1.03032 0.94290 0.96155 1.22412 0.92363 0.94239 0.93568 1.48611 1.38406 1.04429 1.43234 1.21270 0.84132 0.82911 0.82623 1.90772 1.36445 1.81543 1.37095 1.21797 1.00265 0.78226 1.02129 1.43587 1.36952 1.14387 1.20985 1.22336 0.93672 0.90922 0.99916 1.21984 1.05323 1.00759 0.96547 1.19665 1.00831 0.95245 0.98447 1.20581 0.97854 0.99203 0.92845 1.20955 0.98503 0.97617 1.00260 1.21138 1.00179 0.93972 0.97495 1.20247 1.00019 1.01091 0.95003 1.18519 0.99513 0.93791 0.90480 1.22209 0.95568 0.85171 0.98194 0.94032 0.79624 0.95063 0.96599 0.92835 0.91666 0.88371 0.90193 0.88637 0.88239 0.84488 0.82395 0.78576 0.81923 0.84538 0.83843 0.83833 0.86042 0.91500 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.75 -37.83 5.60 -343.45 -1.92 -39.76 16 10 C 0.15 5.75 6.16 86.38 0.53 6.28 16 11 C -0.10 -3.00 4.84 30.59 0.15 -2.85 16 12 C -0.08 -1.79 3.00 -9.40 -0.03 -1.82 16 13 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 14 C -0.12 -1.87 5.91 31.78 0.19 -1.69 16 15 C 0.10 0.98 6.49 86.73 0.56 1.54 16 16 N -0.61 -11.11 3.33 -811.79 -2.70 -13.81 16 17 C 0.50 10.66 7.92 87.66 0.69 11.35 16 18 O -0.58 -18.91 16.68 -3.03 -0.05 -18.96 16 19 C 0.10 1.26 5.67 85.63 0.49 1.75 16 20 N -0.48 -9.04 2.27 -519.97 -1.18 -10.22 16 21 C 0.06 0.94 11.27 83.00 0.94 1.87 16 22 C -0.22 -4.24 11.08 23.51 0.26 -3.98 16 23 C -0.14 -3.15 6.37 -20.20 -0.13 -3.28 16 24 C -0.09 -1.70 10.05 22.23 0.22 -1.48 16 25 C -0.15 -2.73 9.97 22.04 0.22 -2.51 16 26 C -0.11 -2.00 10.01 22.30 0.22 -1.78 16 27 C -0.14 -3.02 10.00 22.37 0.22 -2.80 16 28 C 0.08 1.91 6.80 39.03 0.27 2.17 16 29 C 0.11 2.52 6.38 86.86 0.55 3.07 16 30 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.37 20.08 7.67 -92.71 -0.71 19.37 16 32 H 0.03 1.11 7.75 -2.38 -0.02 1.09 16 33 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.06 1.92 7.97 -2.39 -0.02 1.90 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.28 7.92 -2.39 -0.02 1.26 16 38 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.14 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.16 0.72 8.12 -2.39 -0.02 0.70 16 42 H 0.20 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 44 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 45 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 46 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 47 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 48 H 0.07 1.57 8.04 -2.39 -0.02 1.55 16 49 H 0.06 1.54 8.04 -2.38 -0.02 1.52 16 Total: -1.00 -80.43 406.20 3.35 -77.08 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.23 Total: 28.26 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 6.67 Total: -11.05 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -5.52 Total: -123.06 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.05 Total: -18.96 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -80.43 3.35 -77.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501651592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.713 kcal (2) G-P(sol) polarization free energy of solvation -80.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds