Wall clock time and date at job start Wed Apr 1 2020 00:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.50080 * 55.05945 * 11 10 9 13 13 C 1.53039 * 109.49663 * 175.16485 * 11 10 9 14 14 C 1.53032 * 109.53897 * 181.31566 * 13 11 10 15 15 C 1.53193 * 109.31086 * 298.62771 * 14 13 11 16 16 N 1.46934 * 108.77515 * 54.63776 * 15 14 13 17 17 C 1.34771 * 120.63099 * 126.36444 * 16 15 14 18 18 O 1.21287 * 120.00014 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00253 * 0.03038 * 17 16 15 20 20 N 1.46495 * 109.47416 * 179.97438 * 19 17 16 21 21 C 1.36834 * 125.06433 * 265.02562 * 20 19 17 22 22 C 1.34229 * 109.93513 * 179.97438 * 21 20 19 23 23 C 1.46491 * 106.99830 * 359.97438 * 22 21 20 24 24 C 1.39627 * 134.03863 * 180.02562 * 23 22 21 25 25 C 1.36631 * 119.76672 * 179.22369 * 24 23 22 26 26 C 1.38829 * 120.52341 * 0.69112 * 25 24 23 27 27 C 1.37751 * 120.67142 * 359.54251 * 26 25 24 28 28 C 1.37688 * 125.06779 * 84.71390 * 20 19 17 29 29 C 1.46927 * 118.73503 * 306.39385 * 16 15 14 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 33 33 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 34 34 H 1.09001 * 109.45732 * 301.33358 * 13 11 10 35 35 H 1.09000 * 109.46328 * 61.28904 * 13 11 10 36 36 H 1.08999 * 109.49891 * 178.68369 * 14 13 11 37 37 H 1.08995 * 109.52926 * 58.59491 * 14 13 11 38 38 H 1.09001 * 109.59340 * 294.84783 * 15 14 13 39 39 H 1.09005 * 109.58832 * 174.42176 * 15 14 13 40 40 H 1.09006 * 109.46781 * 299.99482 * 19 17 16 41 41 H 1.09004 * 109.47497 * 59.99239 * 19 17 16 42 42 H 1.07999 * 125.03098 * 359.95563 * 21 20 19 43 43 H 1.08005 * 126.50634 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.11452 * 359.97125 * 24 23 22 45 45 H 1.08000 * 119.73683 * 180.27433 * 25 24 23 46 46 H 1.08005 * 119.66913 * 179.55926 * 26 25 24 47 47 H 1.07994 * 120.11478 * 180.02562 * 27 26 25 48 48 H 1.09003 * 109.58280 * 293.81567 * 29 16 15 49 49 H 1.09003 * 109.70041 * 173.46800 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 1 0.3802 -4.7092 -0.8621 13 6 1.8243 -6.1414 -0.1487 14 6 0.8288 -7.3030 -0.1886 15 6 0.0297 -7.3304 1.1181 16 7 -0.5882 -6.0130 1.3223 17 6 -1.9142 -5.9021 1.5359 18 8 -2.4123 -4.8088 1.7026 19 6 -2.7781 -7.1364 1.5678 20 7 -4.1701 -6.7521 1.8147 21 6 -4.7735 -6.7298 3.0426 22 6 -6.0493 -6.3318 2.9184 23 6 -6.2821 -6.0778 1.4946 24 6 -7.3851 -5.6511 0.7523 25 6 -7.2725 -5.4931 -0.6001 26 6 -6.0739 -5.7671 -1.2447 27 6 -4.9746 -6.1938 -0.5326 28 6 -5.0643 -6.3537 0.8466 29 6 0.2671 -4.8188 1.2884 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0068 32 1 2.6846 -3.7098 -0.9038 33 1 2.6846 -3.7192 0.8761 34 1 2.4113 -6.1346 -1.0671 35 1 2.4895 -6.2623 0.7062 36 1 1.3700 -8.2421 -0.3036 37 1 0.1475 -7.1703 -1.0289 38 1 0.6973 -7.5538 1.9503 39 1 -0.7472 -8.0925 1.0555 40 1 -2.7080 -7.6538 0.6109 41 1 -2.4375 -7.7980 2.3643 42 1 -4.2942 -6.9937 3.9738 43 1 -6.7681 -6.2199 3.7167 44 1 -8.3204 -5.4352 1.2471 45 1 -8.1247 -5.1587 -1.1732 46 1 -6.0023 -5.6442 -2.3154 47 1 -4.0465 -6.4040 -1.0432 48 1 0.9542 -4.8373 2.1345 49 1 -0.3511 -3.9224 1.3394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566913173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:36 Heat of formation + Delta-G solvation = 20.242437 kcal Electronic energy + Delta-G solvation = -29627.026847 eV Core-core repulsion = 25746.825375 eV Total energy + Delta-G solvation = -3880.201472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.38461 -41.12060 -38.93533 -37.81540 -36.65727 -34.64408 -33.80760 -33.11023 -31.74395 -31.20824 -29.80206 -28.47762 -27.09511 -26.00661 -24.88713 -23.62739 -22.73328 -22.54753 -21.81454 -21.12257 -20.04863 -19.21448 -18.50057 -18.10177 -17.42015 -16.84811 -16.71326 -16.49673 -16.30417 -15.93936 -15.44317 -15.41304 -15.31113 -14.91045 -14.83544 -14.65629 -14.23830 -14.14387 -14.04953 -13.90653 -13.75608 -13.51847 -13.10935 -13.04188 -12.87937 -12.68717 -12.52050 -12.49057 -12.23924 -12.09451 -11.96243 -11.86498 -11.76622 -11.59561 -11.34513 -11.03623 -10.97789 -10.53789 -9.70477 -9.09726 -9.05453 -8.58350 -7.97829 -5.29003 0.21611 0.68180 1.42292 1.44499 1.46911 1.52843 1.53390 1.90518 2.10443 2.52673 2.99618 3.35014 3.37615 3.68446 3.71489 3.75885 3.86964 3.87657 3.96832 4.03572 4.09376 4.13707 4.17265 4.26705 4.30494 4.42855 4.54598 4.57718 4.60466 4.73088 4.77417 4.79719 4.87196 4.88884 4.92493 5.00520 5.05309 5.11565 5.16253 5.21494 5.32449 5.43636 5.45962 5.49842 5.55273 5.68903 5.84693 5.87296 6.21987 6.25181 6.29959 6.43478 7.07209 7.27477 8.04136 8.25945 9.25407 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009912 B = 0.003050 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.070020 B = 9179.586489 C =10880.526349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 0.978 3.022 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.157 3.843 11 C -0.093 4.093 12 H 0.047 0.953 13 C -0.107 4.107 14 C -0.129 4.129 15 C 0.096 3.904 16 N -0.604 5.604 17 C 0.480 3.520 18 O -0.582 6.582 19 C 0.100 3.900 20 N -0.475 5.475 21 C 0.057 3.943 22 C -0.223 4.223 23 C -0.137 4.137 24 C -0.086 4.086 25 C -0.155 4.155 26 C -0.111 4.111 27 C -0.145 4.145 28 C 0.082 3.918 29 C 0.129 3.871 30 H 0.250 0.750 31 H 0.369 0.631 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.139 0.861 41 H 0.166 0.834 42 H 0.200 0.800 43 H 0.165 0.835 44 H 0.139 0.861 45 H 0.145 0.855 46 H 0.142 0.858 47 H 0.118 0.882 48 H 0.072 0.928 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.568 -26.844 3.093 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.806 3.194 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.381 4.381 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.030 3.970 11 C -0.113 4.113 12 H 0.066 0.934 13 C -0.145 4.145 14 C -0.167 4.167 15 C -0.024 4.024 16 N -0.337 5.337 17 C 0.268 3.732 18 O -0.461 6.461 19 C -0.025 4.025 20 N -0.159 5.159 21 C -0.067 4.067 22 C -0.247 4.247 23 C -0.142 4.142 24 C -0.105 4.105 25 C -0.174 4.174 26 C -0.130 4.130 27 C -0.165 4.165 28 C -0.024 4.024 29 C 0.006 3.994 30 H 0.059 0.941 31 H 0.200 0.800 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.133 0.867 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.136 0.864 40 H 0.157 0.843 41 H 0.183 0.817 42 H 0.217 0.783 43 H 0.182 0.818 44 H 0.157 0.843 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.136 0.864 48 H 0.090 0.910 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.330 -26.299 3.166 27.234 hybrid contribution 0.077 1.903 -0.147 1.910 sum -6.253 -24.396 3.018 25.365 Atomic orbital electron populations 1.69875 1.07009 1.26144 1.59369 1.25692 0.96309 1.01569 1.03561 0.85146 0.77108 0.78691 0.78431 1.19930 1.22356 1.20051 1.19656 0.91600 0.85341 1.41492 0.90183 1.42686 1.05460 1.01576 1.89465 1.20867 0.93681 0.84327 0.98110 1.21536 0.96920 0.96466 0.96392 0.93436 1.21517 0.97897 0.91678 1.03391 1.21926 0.98084 0.99565 0.97087 1.22260 0.99023 0.82054 0.99098 1.48294 1.06210 1.09058 1.70108 1.21828 0.83105 0.91854 0.76458 1.90832 1.73718 1.30775 1.50738 1.21913 0.78138 0.93853 1.08566 1.43624 1.08810 1.57511 1.05913 1.22358 0.93543 1.02149 0.88678 1.21984 0.97514 1.10950 0.94273 1.19686 0.94020 1.05669 0.94824 1.20589 0.97601 0.98253 0.94025 1.20955 0.98627 1.03158 0.94662 1.21134 0.92483 0.98808 1.00617 1.20242 1.00034 1.05646 0.90588 1.18511 0.90380 1.02229 0.91255 1.21332 0.92720 0.87648 0.97717 0.94143 0.79961 0.95598 0.95506 0.90848 0.90200 0.86744 0.92315 0.88668 0.86447 0.84322 0.81691 0.78311 0.81759 0.84319 0.83737 0.84015 0.86373 0.91011 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.40 13.06 21.65 0.28 -64.12 16 2 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 3 Si 0.98 48.29 29.55 68.60 2.03 50.32 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 6 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.25 -14.64 9.99 84.04 0.84 -13.81 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.75 -40.72 5.38 -343.44 -1.85 -42.57 16 10 C 0.16 6.36 5.65 86.38 0.49 6.85 16 11 C -0.09 -3.00 2.38 -10.71 -0.03 -3.02 16 12 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 13 C -0.11 -2.13 5.17 30.62 0.16 -1.98 16 14 C -0.13 -1.65 6.08 30.67 0.19 -1.47 16 15 C 0.10 1.15 6.34 86.36 0.55 1.70 16 16 N -0.60 -14.93 2.97 -818.87 -2.43 -17.36 16 17 C 0.48 13.86 7.77 87.66 0.68 14.54 16 18 O -0.58 -25.37 15.83 -3.05 -0.05 -25.42 16 19 C 0.10 1.74 4.83 85.63 0.41 2.15 16 20 N -0.48 -11.67 2.27 -519.99 -1.18 -12.85 16 21 C 0.06 1.24 11.27 83.00 0.94 2.18 16 22 C -0.22 -5.41 11.08 23.51 0.26 -5.15 16 23 C -0.14 -3.96 6.37 -20.20 -0.13 -4.09 16 24 C -0.09 -2.20 10.05 22.23 0.22 -1.98 16 25 C -0.16 -3.71 9.97 22.04 0.22 -3.49 16 26 C -0.11 -2.83 10.01 22.30 0.22 -2.60 16 27 C -0.14 -4.09 10.00 22.37 0.22 -3.86 16 28 C 0.08 2.41 6.79 39.03 0.27 2.68 16 29 C 0.13 4.38 5.51 86.36 0.48 4.86 16 30 H 0.25 16.07 8.31 -92.70 -0.77 15.30 16 31 H 0.37 22.18 6.89 -92.71 -0.64 21.54 16 32 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.12 0.53 5.93 -2.38 -0.01 0.52 16 40 H 0.14 1.67 7.69 -2.38 -0.02 1.66 16 41 H 0.17 1.24 7.92 -2.38 -0.02 1.22 16 42 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 44 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 45 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 46 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 47 H 0.12 3.03 8.06 -2.91 -0.02 3.01 16 48 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.04 2.01 6.21 -2.39 -0.01 2.00 16 Total: -1.00 -90.06 397.56 3.56 -86.50 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: 0.31 Total: 36.33 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 6.45 Total: -10.84 kcal Atomic # 7 Polarization: -131.72 SS G_CDS: -5.18 Total: -136.89 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -90.06 3.56 -86.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566913173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.742 kcal (2) G-P(sol) polarization free energy of solvation -90.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds