Wall clock time and date at job start Wed Apr 1 2020 01:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 120.00236 * 2 1 4 4 H 1.48495 * 109.47178 * 270.00187 * 3 2 1 5 5 H 1.48508 * 109.46775 * 30.00053 * 3 2 1 6 6 H 1.48498 * 109.47320 * 149.99933 * 3 2 1 7 7 C 1.38956 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00084 * 0.27008 * 7 2 1 10 10 C 1.34774 * 120.00175 * 179.72480 * 9 7 2 11 11 O 1.21294 * 119.99891 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00167 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.46742 * 180.02562 * 12 10 9 14 14 C 1.47840 * 111.00217 * 292.97166 * 13 12 10 15 15 C 1.54904 * 104.80210 * 213.63924 * 14 13 12 16 16 C 1.55143 * 101.65064 * 37.07134 * 15 14 13 17 17 C 1.47446 * 110.99531 * 172.13422 * 13 12 10 18 18 H 1.09004 * 109.88574 * 242.66400 * 17 13 12 19 19 C 1.52999 * 109.89206 * 3.84821 * 17 13 12 20 20 N 1.46494 * 109.47508 * 182.42230 * 19 17 13 21 21 C 1.34768 * 120.00196 * 185.05565 * 20 19 17 22 22 O 1.21282 * 120.00192 * 359.97438 * 21 20 19 23 23 C 1.50707 * 120.00158 * 180.02562 * 21 20 19 24 24 C 1.52998 * 112.84918 * 48.79847 * 23 21 20 25 25 F 1.39899 * 109.47153 * 189.66693 * 24 23 21 26 26 C 1.53787 * 113.61173 * 277.49551 * 23 21 20 27 27 C 1.53780 * 87.08098 * 220.01703 * 26 23 21 28 28 C 1.53774 * 113.61518 * 179.97438 * 23 21 20 29 29 H 0.97001 * 119.99697 * 359.97438 * 1 2 3 30 30 H 0.97008 * 120.00043 * 359.72654 * 9 7 2 31 31 H 1.09002 * 109.47015 * 299.99799 * 12 10 9 32 32 H 1.08989 * 109.47021 * 60.00120 * 12 10 9 33 33 H 1.09001 * 110.37319 * 332.47602 * 14 13 12 34 34 H 1.09001 * 110.37284 * 94.80885 * 14 13 12 35 35 H 1.09000 * 110.99022 * 278.98755 * 15 14 13 36 36 H 1.08997 * 110.99450 * 155.16144 * 15 14 13 37 37 H 1.08994 * 110.70909 * 205.96804 * 16 15 14 38 38 H 1.08999 * 110.70477 * 82.73013 * 16 15 14 39 39 H 1.09006 * 109.47173 * 302.42542 * 19 17 13 40 40 H 1.09002 * 109.46889 * 62.42136 * 19 17 13 41 41 H 0.97010 * 119.99648 * 5.04985 * 20 19 17 42 42 H 1.08999 * 109.47170 * 309.67235 * 24 23 21 43 43 H 1.09004 * 109.46726 * 69.67077 * 24 23 21 44 44 H 1.09000 * 113.61305 * 334.56710 * 26 23 21 45 45 H 1.09002 * 113.61324 * 105.47154 * 26 23 21 46 46 H 1.08997 * 113.61585 * 270.88691 * 27 26 23 47 47 H 1.08994 * 113.61520 * 139.97713 * 27 26 23 48 48 H 1.09002 * 113.61306 * 254.52926 * 28 23 21 49 49 H 1.08996 * 113.61615 * 25.43158 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0067 10 6 1.9972 -3.5579 -0.0128 11 8 3.2101 -3.5579 -0.0124 12 6 1.2436 -4.8630 -0.0201 13 7 2.1983 -5.9795 -0.0253 14 6 2.9529 -6.0255 -1.2957 15 6 3.1982 -7.5327 -1.5559 16 6 1.8712 -8.1579 -1.0506 17 6 1.5050 -7.2681 0.1559 18 1 1.8374 -7.7412 1.0800 19 6 -0.0079 -7.0441 0.1973 20 7 -0.6845 -8.3214 0.4353 21 6 -2.0304 -8.3861 0.4098 22 8 -2.6815 -7.3867 0.1904 23 6 -2.7264 -9.7001 0.6552 24 6 -2.2072 -10.4243 1.8989 25 9 -2.7347 -11.7194 1.9387 26 6 -2.8088 -10.5959 -0.5921 27 6 -4.2343 -10.9568 -0.1422 28 6 -4.2600 -9.6058 0.5930 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3907 -0.0066 31 1 0.6167 -4.9255 0.8694 32 1 0.6174 -4.9159 -0.9105 33 1 2.3631 -5.5920 -2.1034 34 1 3.9017 -5.4989 -1.1928 35 1 4.0466 -7.8961 -0.9760 36 1 3.3416 -7.7273 -2.6188 37 1 2.0267 -9.1896 -0.7354 38 1 1.1009 -8.1006 -1.8196 39 1 -0.2504 -6.3491 1.0013 40 1 -0.3398 -6.6288 -0.7543 41 1 -0.1637 -9.1207 0.6111 42 1 -1.1191 -10.4761 1.8615 43 1 -2.5145 -9.8792 2.7915 44 1 -2.7741 -10.0422 -1.5304 45 1 -2.1178 -11.4386 -0.5709 46 1 -4.2768 -11.8175 0.5252 47 1 -4.9483 -11.0209 -0.9632 48 1 -4.7402 -9.6495 1.5706 49 1 -4.6223 -8.7815 -0.0211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567379309.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:46 Heat of formation + Delta-G solvation = -90.198753 kcal Electronic energy + Delta-G solvation = -30487.813847 eV Core-core repulsion = 26172.054061 eV Total energy + Delta-G solvation = -4315.759786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.22446 -40.80177 -39.67769 -37.90506 -37.46009 -34.87045 -33.88319 -32.13891 -31.11559 -30.64941 -29.07604 -26.72978 -26.17405 -25.49200 -24.27460 -24.20049 -21.58848 -20.96657 -20.39101 -19.34731 -18.91566 -18.04940 -17.69301 -16.96419 -16.45092 -16.33770 -15.85132 -15.61972 -15.50718 -15.22225 -14.97518 -14.55118 -14.47410 -14.28891 -13.90055 -13.79361 -13.66299 -13.04678 -12.88099 -12.85180 -12.66448 -12.49742 -12.37189 -12.04044 -11.73851 -11.54469 -11.46523 -11.45012 -11.20368 -11.06260 -10.96561 -10.92166 -10.72416 -10.65277 -10.62164 -10.37192 -10.19225 -9.96986 -9.47497 -9.28167 -8.45824 -7.95931 -7.89181 -6.38567 -3.79568 2.30282 2.82086 3.19408 3.27941 3.33797 3.78053 3.91474 3.95984 3.98539 4.03773 4.22433 4.28851 4.40453 4.44716 4.57848 4.61742 4.73660 4.76784 5.03356 5.09271 5.11849 5.15637 5.22478 5.28197 5.31498 5.36537 5.41544 5.55017 5.59126 5.62138 5.63107 5.69815 5.74422 5.77132 5.81631 5.93623 5.99988 6.04727 6.16874 6.23921 6.30973 6.46955 7.14816 7.20768 7.22407 7.57746 7.94503 8.08736 8.64545 9.20819 9.57403 10.09074 10.79124 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002423 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.122623 B =11552.408965 C =12922.627554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.579 6.579 12 C 0.031 3.969 13 N -0.492 5.492 14 C 0.051 3.949 15 C -0.130 4.130 16 C -0.139 4.139 17 C 0.061 3.939 18 H 0.091 0.909 19 C 0.097 3.903 20 N -0.724 5.724 21 C 0.530 3.470 22 O -0.525 6.525 23 C -0.147 4.147 24 C 0.090 3.910 25 F -0.205 7.205 26 C -0.115 4.115 27 C -0.145 4.145 28 C -0.110 4.110 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.398 0.602 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 -24.994 -0.041 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.463 6.463 12 C -0.100 4.100 13 N -0.216 5.216 14 C -0.076 4.076 15 C -0.168 4.168 16 C -0.177 4.177 17 C -0.048 4.048 18 H 0.109 0.891 19 C -0.027 4.027 20 N -0.376 5.376 21 C 0.314 3.686 22 O -0.400 6.400 23 C -0.151 4.151 24 C 0.035 3.965 25 F -0.186 7.186 26 C -0.153 4.153 27 C -0.182 4.182 28 C -0.148 4.148 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.233 0.767 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.250 -23.993 0.221 24.562 hybrid contribution -0.569 0.459 -0.561 0.922 sum -5.819 -23.535 -0.340 24.246 Atomic orbital electron populations 1.69623 1.05920 1.28133 1.50547 1.25269 0.95628 0.99705 0.97402 0.85865 0.79237 0.80883 0.78337 1.20461 1.20935 1.19421 1.19683 0.93313 0.82193 1.47601 0.87939 1.41863 1.09211 1.04575 1.64469 1.19693 0.88376 0.84487 0.84533 1.90502 1.13630 1.86987 1.55149 1.22228 0.94407 0.91631 1.01766 1.63505 1.23102 0.99834 1.35185 1.23090 1.00177 0.95183 0.89164 1.22741 0.97248 0.95875 1.00983 1.22898 0.98198 0.99122 0.97512 1.22758 0.90644 0.91912 0.99460 0.89145 1.22261 0.92201 0.85440 1.02777 1.46011 1.06414 1.12215 1.72970 1.20025 0.82067 0.89592 0.76876 1.90756 1.65160 1.36294 1.47796 1.22854 0.99253 0.94658 0.98343 1.21613 0.98468 0.78971 0.97426 1.92747 1.88524 1.39849 1.97479 1.22833 0.98623 0.98224 0.95591 1.23023 0.96358 0.98150 1.00707 1.22867 0.91217 0.98629 1.02083 0.91876 0.77476 0.88883 0.93027 0.93986 0.88447 0.90635 0.91016 0.90962 0.91312 0.90185 0.90763 0.76746 0.90139 0.89569 0.89327 0.90328 0.88604 0.91033 0.90757 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 2 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 3 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 10 C 0.44 10.55 7.56 -10.99 -0.08 10.47 16 11 O -0.58 -15.56 14.45 5.55 0.08 -15.48 16 12 C 0.03 0.56 4.17 -4.98 -0.02 0.54 16 13 N -0.49 -7.84 4.90 -224.78 -1.10 -8.95 16 14 C 0.05 0.79 5.66 -2.30 -0.01 0.78 16 15 C -0.13 -1.44 7.08 -24.59 -0.17 -1.61 16 16 C -0.14 -1.30 6.10 -24.90 -0.15 -1.46 16 17 C 0.06 0.70 3.51 -66.72 -0.23 0.46 16 18 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 19 C 0.10 1.12 3.75 -4.05 -0.02 1.11 16 20 N -0.72 -6.47 5.21 -60.29 -0.31 -6.78 16 21 C 0.53 5.71 6.93 -10.99 -0.08 5.64 16 22 O -0.52 -8.08 15.89 5.56 0.09 -7.99 16 23 C -0.15 -1.16 1.26 -154.85 -0.19 -1.36 16 24 C 0.09 0.56 6.96 37.16 0.26 0.82 16 25 F -0.21 -1.55 14.57 2.25 0.03 -1.52 16 26 C -0.11 -0.80 6.96 -25.92 -0.18 -0.98 16 27 C -0.15 -1.01 7.57 -25.90 -0.20 -1.21 16 28 C -0.11 -0.93 6.97 -25.90 -0.18 -1.11 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 31 H 0.09 1.55 6.13 -51.93 -0.32 1.24 16 32 H 0.05 0.87 6.85 -51.94 -0.36 0.52 16 33 H 0.04 0.67 7.66 -51.93 -0.40 0.28 16 34 H 0.10 1.77 7.27 -51.93 -0.38 1.39 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.66 7.81 -51.93 -0.41 0.26 16 39 H 0.08 1.05 6.22 -51.93 -0.32 0.73 16 40 H 0.07 0.99 7.02 -51.93 -0.36 0.62 16 41 H 0.40 2.38 7.24 -40.82 -0.30 2.09 16 42 H 0.08 0.33 7.04 -51.93 -0.37 -0.03 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 45 H 0.08 0.46 8.06 -51.93 -0.42 0.04 16 46 H 0.10 0.66 6.44 -51.93 -0.33 0.33 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 49 H 0.10 1.00 7.43 -51.93 -0.39 0.62 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -33.52 387.46 -8.79 -42.30 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -7.55 Total: 11.11 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.50 Total: 4.02 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.75 Total: -54.58 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.17 Total: -23.47 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.03 Total: -1.52 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.52 -8.79 -42.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567379309.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.896 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds