Wall clock time and date at job start Wed Apr 1 2020 01:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 120.00236 * 2 1 4 4 H 1.48495 * 109.47178 * 270.00187 * 3 2 1 5 5 H 1.48508 * 109.46775 * 30.00053 * 3 2 1 6 6 H 1.48498 * 109.47320 * 149.99933 * 3 2 1 7 7 C 1.38956 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00084 * 0.27008 * 7 2 1 10 10 C 1.34774 * 120.00175 * 179.72480 * 9 7 2 11 11 O 1.21294 * 119.99891 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00167 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.46742 * 180.02562 * 12 10 9 14 14 C 1.47840 * 111.00217 * 292.97166 * 13 12 10 15 15 C 1.54904 * 104.80210 * 213.63924 * 14 13 12 16 16 C 1.55143 * 101.65064 * 37.07134 * 15 14 13 17 17 C 1.47446 * 110.99531 * 172.13422 * 13 12 10 18 18 H 1.09004 * 109.88574 * 242.66400 * 17 13 12 19 19 C 1.52999 * 109.89206 * 3.84821 * 17 13 12 20 20 N 1.46494 * 109.47508 * 182.42230 * 19 17 13 21 21 C 1.34768 * 120.00196 * 185.05565 * 20 19 17 22 22 O 1.21282 * 120.00192 * 359.97438 * 21 20 19 23 23 C 1.50707 * 120.00158 * 180.02562 * 21 20 19 24 24 C 1.52998 * 112.84918 * 48.79847 * 23 21 20 25 25 F 1.39899 * 109.47153 * 189.66693 * 24 23 21 26 26 C 1.53787 * 113.61173 * 277.49551 * 23 21 20 27 27 C 1.53780 * 87.08098 * 220.01703 * 26 23 21 28 28 C 1.53774 * 113.61518 * 179.97438 * 23 21 20 29 29 H 0.97001 * 119.99697 * 359.97438 * 1 2 3 30 30 H 0.97008 * 120.00043 * 359.72654 * 9 7 2 31 31 H 1.09002 * 109.47015 * 299.99799 * 12 10 9 32 32 H 1.08989 * 109.47021 * 60.00120 * 12 10 9 33 33 H 1.09001 * 110.37319 * 332.47602 * 14 13 12 34 34 H 1.09001 * 110.37284 * 94.80885 * 14 13 12 35 35 H 1.09000 * 110.99022 * 278.98755 * 15 14 13 36 36 H 1.08997 * 110.99450 * 155.16144 * 15 14 13 37 37 H 1.08994 * 110.70909 * 205.96804 * 16 15 14 38 38 H 1.08999 * 110.70477 * 82.73013 * 16 15 14 39 39 H 1.09006 * 109.47173 * 302.42542 * 19 17 13 40 40 H 1.09002 * 109.46889 * 62.42136 * 19 17 13 41 41 H 0.97010 * 119.99648 * 5.04985 * 20 19 17 42 42 H 1.08999 * 109.47170 * 309.67235 * 24 23 21 43 43 H 1.09004 * 109.46726 * 69.67077 * 24 23 21 44 44 H 1.09000 * 113.61305 * 334.56710 * 26 23 21 45 45 H 1.09002 * 113.61324 * 105.47154 * 26 23 21 46 46 H 1.08997 * 113.61585 * 270.88691 * 27 26 23 47 47 H 1.08994 * 113.61520 * 139.97713 * 27 26 23 48 48 H 1.09002 * 113.61306 * 254.52926 * 28 23 21 49 49 H 1.08996 * 113.61615 * 25.43158 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0067 10 6 1.9972 -3.5579 -0.0128 11 8 3.2101 -3.5579 -0.0124 12 6 1.2436 -4.8630 -0.0201 13 7 2.1983 -5.9795 -0.0253 14 6 2.9529 -6.0255 -1.2957 15 6 3.1982 -7.5327 -1.5559 16 6 1.8712 -8.1579 -1.0506 17 6 1.5050 -7.2681 0.1559 18 1 1.8374 -7.7412 1.0800 19 6 -0.0079 -7.0441 0.1973 20 7 -0.6845 -8.3214 0.4353 21 6 -2.0304 -8.3861 0.4098 22 8 -2.6815 -7.3867 0.1904 23 6 -2.7264 -9.7001 0.6552 24 6 -2.2072 -10.4243 1.8989 25 9 -2.7347 -11.7194 1.9387 26 6 -2.8088 -10.5959 -0.5921 27 6 -4.2343 -10.9568 -0.1422 28 6 -4.2600 -9.6058 0.5930 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3907 -0.0066 31 1 0.6167 -4.9255 0.8694 32 1 0.6174 -4.9159 -0.9105 33 1 2.3631 -5.5920 -2.1034 34 1 3.9017 -5.4989 -1.1928 35 1 4.0466 -7.8961 -0.9760 36 1 3.3416 -7.7273 -2.6188 37 1 2.0267 -9.1896 -0.7354 38 1 1.1009 -8.1006 -1.8196 39 1 -0.2504 -6.3491 1.0013 40 1 -0.3398 -6.6288 -0.7543 41 1 -0.1637 -9.1207 0.6111 42 1 -1.1191 -10.4761 1.8615 43 1 -2.5145 -9.8792 2.7915 44 1 -2.7741 -10.0422 -1.5304 45 1 -2.1178 -11.4386 -0.5709 46 1 -4.2768 -11.8175 0.5252 47 1 -4.9483 -11.0209 -0.9632 48 1 -4.7402 -9.6495 1.5706 49 1 -4.6223 -8.7815 -0.0211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567379309.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:45 Heat of formation + Delta-G solvation = -115.192978 kcal Electronic energy + Delta-G solvation = -30488.897678 eV Core-core repulsion = 26172.054061 eV Total energy + Delta-G solvation = -4316.843617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.73862 -41.66473 -40.87586 -39.44155 -38.45421 -36.05140 -35.72586 -33.52647 -33.00736 -31.52428 -29.79273 -28.34158 -26.81518 -26.31613 -26.10294 -24.93030 -22.57424 -21.86701 -21.60699 -20.70063 -19.99863 -19.69184 -18.67312 -18.25319 -17.18829 -17.09499 -16.87554 -16.77379 -16.54536 -16.35233 -16.07268 -15.97180 -15.82856 -15.61710 -15.21092 -14.83225 -14.53396 -14.42742 -14.20339 -13.69448 -13.51011 -13.49469 -13.38661 -13.29746 -13.10320 -12.97458 -12.79090 -12.43647 -12.29980 -12.22535 -12.12984 -11.99282 -11.96331 -11.92220 -11.59951 -11.49693 -11.30355 -11.17639 -10.84937 -10.35564 -10.16784 -10.03171 -9.26320 -8.47795 -5.97184 1.36299 1.39574 1.46732 1.53064 1.98889 2.02266 2.27023 2.78621 3.17550 3.18409 3.31403 3.39803 3.41711 3.51437 3.68022 3.75229 3.81825 3.83888 4.10961 4.15740 4.20885 4.24429 4.30450 4.35693 4.41038 4.49865 4.54532 4.56822 4.59918 4.74433 4.77483 4.83205 4.94359 4.96676 5.03215 5.06037 5.06409 5.16170 5.21548 5.26751 5.37414 5.38971 5.45783 5.82203 5.99428 6.10134 6.45296 6.57945 7.10778 7.15448 7.53577 8.08951 8.69782 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002423 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.122623 B =11552.408965 C =12922.627554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.016 4.016 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.331 4.331 8 H 0.080 0.920 9 N -0.576 5.576 10 C 0.441 3.559 11 O -0.613 6.613 12 C 0.048 3.952 13 N -0.512 5.512 14 C 0.046 3.954 15 C -0.119 4.119 16 C -0.128 4.128 17 C 0.066 3.934 18 H 0.111 0.889 19 C 0.105 3.895 20 N -0.704 5.704 21 C 0.529 3.471 22 O -0.578 6.578 23 C -0.141 4.141 24 C 0.090 3.910 25 F -0.210 7.210 26 C -0.110 4.110 27 C -0.138 4.138 28 C -0.121 4.121 29 H 0.277 0.723 30 H 0.394 0.606 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.417 0.583 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.563 -27.595 0.218 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.215 4.215 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.214 5.214 10 C 0.228 3.772 11 O -0.499 6.499 12 C -0.083 4.083 13 N -0.236 5.236 14 C -0.082 4.082 15 C -0.157 4.157 16 C -0.166 4.166 17 C -0.042 4.042 18 H 0.129 0.871 19 C -0.020 4.020 20 N -0.357 5.357 21 C 0.316 3.684 22 O -0.456 6.456 23 C -0.144 4.144 24 C 0.035 3.965 25 F -0.191 7.191 26 C -0.147 4.147 27 C -0.175 4.175 28 C -0.159 4.159 29 H 0.087 0.913 30 H 0.227 0.773 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.256 0.744 42 H 0.127 0.873 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.995 -26.655 0.486 27.123 hybrid contribution -0.646 1.237 -0.634 1.533 sum -5.641 -25.418 -0.148 26.037 Atomic orbital electron populations 1.69696 1.06958 1.29293 1.50428 1.26096 0.96544 1.02565 0.96313 0.84902 0.77889 0.76717 0.78673 1.19583 1.19555 1.19593 1.19666 0.92685 0.83891 1.49853 0.90154 1.41963 1.09222 1.04850 1.65322 1.20733 0.88319 0.85850 0.82295 1.90473 1.15451 1.87830 1.56097 1.22019 0.94058 0.89403 1.02832 1.63422 1.23505 1.01110 1.35579 1.23021 0.98131 0.98363 0.88650 1.22693 0.98541 0.92103 1.02364 1.22897 0.96934 1.00464 0.96269 1.22854 0.89838 0.90016 1.01530 0.87117 1.21976 0.92534 0.86322 1.01136 1.45779 1.05988 1.12033 1.71936 1.20529 0.82257 0.89938 0.75676 1.90742 1.66320 1.38356 1.50222 1.22867 0.98240 0.93357 0.99963 1.21730 0.99966 0.78388 0.96379 1.92738 1.88794 1.40183 1.97415 1.22832 0.98949 0.98318 0.94618 1.22990 0.96635 0.97209 1.00653 1.22879 0.92047 0.98879 1.02106 0.91330 0.77291 0.87514 0.92084 0.95406 0.92189 0.89812 0.89356 0.87009 0.91246 0.91979 0.92634 0.74448 0.87319 0.89141 0.90131 0.88319 0.87993 0.90651 0.90505 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.64 13.05 21.67 0.28 -51.36 16 2 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 3 Si 0.99 44.00 29.55 68.60 2.03 46.03 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.33 -19.35 9.68 84.04 0.81 -18.53 16 8 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.58 -30.89 5.29 -306.98 -1.62 -32.51 16 10 C 0.44 21.78 7.56 87.66 0.66 22.45 16 11 O -0.61 -34.43 14.45 -3.07 -0.04 -34.48 16 12 C 0.05 1.76 4.17 85.56 0.36 2.12 16 13 N -0.51 -16.10 4.90 -865.07 -4.24 -20.35 16 14 C 0.05 1.43 5.66 86.77 0.49 1.92 16 15 C -0.12 -2.33 7.08 31.98 0.23 -2.10 16 16 C -0.13 -1.91 6.10 31.78 0.19 -1.72 16 17 C 0.07 1.33 3.51 45.26 0.16 1.49 16 18 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 19 C 0.11 2.29 3.75 86.38 0.32 2.61 16 20 N -0.70 -10.85 5.21 -463.07 -2.41 -13.27 16 21 C 0.53 10.79 6.93 87.66 0.61 11.39 16 22 O -0.58 -18.05 15.89 -3.04 -0.05 -18.10 16 23 C -0.14 -1.96 1.26 -52.40 -0.07 -2.02 16 24 C 0.09 0.83 6.96 71.98 0.50 1.33 16 25 F -0.21 -2.52 14.57 44.97 0.66 -1.86 16 26 C -0.11 -1.26 6.96 31.12 0.22 -1.05 16 27 C -0.14 -1.69 7.57 31.14 0.24 -1.45 16 28 C -0.12 -1.99 6.97 31.13 0.22 -1.77 16 29 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.39 20.43 7.90 -92.70 -0.73 19.70 16 31 H 0.11 3.61 6.13 -2.39 -0.01 3.59 16 32 H 0.06 2.12 6.85 -2.39 -0.02 2.10 16 33 H 0.03 0.92 7.66 -2.39 -0.02 0.90 16 34 H 0.06 2.29 7.27 -2.39 -0.02 2.27 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.09 7.81 -2.39 -0.02 1.07 16 39 H 0.06 1.60 6.22 -2.38 -0.01 1.59 16 40 H 0.06 1.45 7.02 -2.39 -0.02 1.43 16 41 H 0.42 3.22 7.24 -92.70 -0.67 2.55 16 42 H 0.11 0.40 7.04 -2.39 -0.02 0.38 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 45 H 0.10 0.77 8.06 -2.39 -0.02 0.75 16 46 H 0.10 1.16 6.44 -2.39 -0.02 1.15 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.08 1.18 8.10 -2.39 -0.02 1.16 16 49 H 0.08 1.61 7.43 -2.39 -0.02 1.59 16 Total: -1.00 -76.67 387.46 -0.42 -77.08 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -0.42 Total: 34.54 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 5.41 Total: 14.27 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -8.00 Total: -117.49 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -0.09 Total: -52.58 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.66 Total: -1.86 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -76.67 -0.42 -77.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567379309.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.109 kcal (2) G-P(sol) polarization free energy of solvation -76.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds