Wall clock time and date at job start Wed Apr 1 2020 01:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86807 * 119.99831 * 2 1 4 4 H 1.48499 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46978 * 299.99535 * 3 2 1 6 6 H 1.48501 * 109.47115 * 60.00111 * 3 2 1 7 7 C 1.38952 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99999 * 180.02562 * 7 2 1 9 9 N 1.37092 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99761 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00215 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99924 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46940 * 172.38216 * 12 10 9 14 14 C 1.47896 * 111.00247 * 63.13108 * 13 12 10 15 15 C 1.53994 * 107.05879 * 214.15558 * 14 13 12 16 16 C 1.54595 * 105.14268 * 1.22454 * 15 14 13 17 17 C 1.48541 * 110.99852 * 305.73270 * 13 12 10 18 18 H 1.09005 * 110.66607 * 41.29167 * 17 13 12 19 19 C 1.52994 * 110.66768 * 278.15690 * 17 13 12 20 20 N 1.46499 * 109.47335 * 66.53717 * 19 17 13 21 21 C 1.34778 * 120.00282 * 187.10251 * 20 19 17 22 22 O 1.21280 * 119.99529 * 359.97438 * 21 20 19 23 23 C 1.50701 * 120.00006 * 179.97438 * 21 20 19 24 24 C 1.53000 * 112.84867 * 50.33073 * 23 21 20 25 25 F 1.39899 * 109.47219 * 189.66141 * 24 23 21 26 26 C 1.53776 * 113.61457 * 279.13650 * 23 21 20 27 27 C 1.53952 * 87.01822 * 220.04927 * 26 23 21 28 28 C 1.53772 * 87.11288 * 25.36120 * 27 26 23 29 29 H 0.97002 * 120.00069 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00533 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47298 * 52.38409 * 12 10 9 32 32 H 1.08992 * 109.47337 * 292.37760 * 12 10 9 33 33 H 1.09000 * 109.92184 * 333.50469 * 14 13 12 34 34 H 1.09003 * 109.92011 * 94.80193 * 14 13 12 35 35 H 1.09005 * 110.30831 * 120.14486 * 15 14 13 36 36 H 1.08998 * 110.31225 * 242.30425 * 15 14 13 37 37 H 1.09000 * 110.72389 * 140.31236 * 16 15 14 38 38 H 1.08998 * 110.72352 * 263.42212 * 16 15 14 39 39 H 1.09001 * 109.47268 * 186.53314 * 19 17 13 40 40 H 1.09002 * 109.47528 * 306.53459 * 19 17 13 41 41 H 0.96999 * 119.99695 * 7.09667 * 20 19 17 42 42 H 1.08995 * 109.47364 * 309.67141 * 24 23 21 43 43 H 1.09005 * 109.46966 * 69.66306 * 24 23 21 44 44 H 1.09008 * 113.61580 * 334.56353 * 26 23 21 45 45 H 1.08993 * 113.61716 * 105.47017 * 26 23 21 46 46 H 1.09004 * 113.54041 * 270.80953 * 27 26 23 47 47 H 1.09002 * 113.67021 * 139.93663 * 27 26 23 48 48 H 1.08998 * 113.62144 * 220.08849 * 28 27 26 49 49 H 1.09007 * 113.61471 * 89.18470 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1878 -5.9733 -0.1826 14 6 3.1430 -6.0490 0.9440 15 6 4.4867 -6.5297 0.3655 16 6 4.2393 -6.6886 -1.1522 17 6 3.0137 -5.7739 -1.4010 18 1 3.3227 -4.7323 -1.4900 19 6 2.2508 -6.2209 -2.6496 20 7 1.1041 -5.3349 -2.8647 21 6 0.2025 -5.6206 -3.8249 22 8 0.3407 -6.6109 -4.5111 23 6 -0.9774 -4.7094 -4.0456 24 6 -0.5755 -3.2396 -4.1832 25 9 -1.7223 -2.4387 -4.1638 26 6 -2.1298 -4.9427 -3.0545 27 6 -3.0866 -4.7393 -4.2433 28 6 -1.9311 -5.1933 -5.1507 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0005 31 1 0.5187 -4.8641 -0.8126 32 1 0.7237 -4.9817 0.9515 33 1 3.2641 -5.0641 1.3950 34 1 2.7837 -6.7596 1.6884 35 1 5.2639 -5.7871 0.5464 36 1 4.7673 -7.4867 0.8053 37 1 5.1014 -6.3418 -1.7220 38 1 4.0071 -7.7247 -1.3988 39 1 2.9120 -6.1758 -3.5150 40 1 1.8992 -7.2437 -2.5139 41 1 0.9937 -4.5427 -2.3159 42 1 0.0758 -2.9619 -3.3545 43 1 -0.0467 -3.0942 -5.1253 44 1 -2.1539 -5.9516 -2.6424 45 1 -2.2114 -4.1701 -2.2901 46 1 -3.3781 -3.6999 -4.3947 47 1 -3.9361 -5.4223 -4.2433 48 1 -1.8524 -4.6228 -6.0761 49 1 -1.9006 -6.2708 -5.3127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567379310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:48 Heat of formation + Delta-G solvation = -107.173061 kcal Electronic energy + Delta-G solvation = -32360.633884 eV Core-core repulsion = 28044.138037 eV Total energy + Delta-G solvation = -4316.495847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.80153 -41.77021 -41.03828 -38.96502 -38.38162 -36.01271 -35.69914 -33.53505 -32.96806 -31.54806 -29.87053 -28.27092 -26.82341 -26.41109 -25.87516 -24.77018 -22.33529 -21.96804 -21.54164 -20.95507 -20.02263 -19.69824 -18.81673 -17.93424 -17.37209 -17.19045 -16.95868 -16.72608 -16.62959 -16.24554 -16.07507 -15.97047 -15.72336 -15.50740 -15.18783 -15.17189 -14.54487 -14.40685 -13.82244 -13.66023 -13.48264 -13.37322 -13.34163 -13.14918 -13.05696 -12.85756 -12.50670 -12.40697 -12.25800 -12.20644 -12.14167 -12.11660 -12.01398 -11.97084 -11.64098 -11.31761 -11.19938 -11.16076 -10.91952 -10.76519 -10.13261 -9.97713 -9.16179 -8.46728 -5.95381 1.33005 1.41598 1.44254 1.52992 1.95563 2.07579 2.27072 2.96871 3.17206 3.17617 3.19767 3.35783 3.36965 3.60730 3.76761 3.79151 3.83255 4.01804 4.06911 4.19808 4.24113 4.36417 4.39682 4.45492 4.47171 4.50472 4.56456 4.60742 4.73400 4.76197 4.80897 4.83707 4.97536 4.97906 5.06179 5.09062 5.14221 5.16132 5.23148 5.35909 5.41599 5.41782 5.47052 5.87017 5.89107 6.03074 6.33948 6.55572 7.05546 7.10726 7.51956 8.05032 8.68131 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.007338 B = 0.005673 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3814.927036 B = 4934.213190 C = 7967.788316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.005 4.005 3 Si 0.982 3.018 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.328 4.328 8 H 0.079 0.921 9 N -0.562 5.562 10 C 0.405 3.595 11 O -0.610 6.610 12 C 0.030 3.970 13 N -0.480 5.480 14 C 0.031 3.969 15 C -0.115 4.115 16 C -0.103 4.103 17 C 0.033 3.967 18 H 0.071 0.929 19 C 0.138 3.862 20 N -0.722 5.722 21 C 0.535 3.465 22 O -0.565 6.565 23 C -0.149 4.149 24 C 0.090 3.910 25 F -0.208 7.208 26 C -0.118 4.118 27 C -0.134 4.134 28 C -0.105 4.105 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.400 0.600 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 -10.722 -5.151 12.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.206 4.206 3 Si 0.807 3.193 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.458 4.458 8 H 0.097 0.903 9 N -0.199 5.199 10 C 0.192 3.808 11 O -0.497 6.497 12 C -0.102 4.102 13 N -0.203 5.203 14 C -0.097 4.097 15 C -0.154 4.154 16 C -0.142 4.142 17 C -0.076 4.076 18 H 0.088 0.912 19 C 0.014 3.986 20 N -0.375 5.375 21 C 0.322 3.678 22 O -0.445 6.445 23 C -0.152 4.152 24 C 0.035 3.965 25 F -0.189 7.189 26 C -0.156 4.156 27 C -0.171 4.171 28 C -0.143 4.143 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.238 0.762 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.111 0.889 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.153 -11.733 -5.653 13.200 hybrid contribution 0.380 2.408 0.608 2.513 sum -1.773 -9.325 -5.045 10.749 Atomic orbital electron populations 1.69656 1.06599 1.29173 1.49629 1.25898 0.96363 1.02034 0.96323 0.85020 0.78180 0.77929 0.78165 1.19896 1.19873 1.19996 1.19611 0.92587 0.83846 1.49781 0.90252 1.42099 1.09290 1.04835 1.63630 1.21739 0.88855 0.86688 0.83495 1.90473 1.15136 1.87464 1.56662 1.22399 0.96379 0.86667 1.04776 1.65183 1.15630 1.36533 1.02957 1.22893 0.92268 1.00462 0.94035 1.22214 0.96233 1.01383 0.95528 1.22338 0.95871 0.99735 0.96237 1.23345 0.93545 1.00972 0.89713 0.91176 1.21378 0.86619 0.94255 0.96299 1.46478 1.25770 1.28595 1.36610 1.20297 0.82730 0.85694 0.79080 1.90649 1.76350 1.29477 1.47985 1.22876 0.93858 0.94749 1.03730 1.21617 0.84477 0.85883 1.04554 1.92734 1.53015 1.74990 1.98194 1.22926 0.92768 1.03077 0.96782 1.22974 0.96804 1.03035 0.94333 1.22818 0.93294 1.02157 0.96045 0.91341 0.77111 0.88087 0.87408 0.94279 0.89727 0.92950 0.89239 0.90667 0.89280 0.91141 0.90424 0.76176 0.91067 0.88648 0.88891 0.90275 0.88917 0.89480 0.90250 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.15 13.05 21.66 0.28 -45.87 16 2 C -0.01 -0.25 5.50 84.93 0.47 0.21 16 3 Si 0.98 40.95 29.55 68.60 2.03 42.98 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.33 -17.08 9.68 84.04 0.81 -16.27 16 8 H 0.08 4.45 7.16 -2.91 -0.02 4.43 16 9 N -0.56 -25.74 5.29 -306.98 -1.62 -27.37 16 10 C 0.41 16.80 6.35 87.66 0.56 17.36 16 11 O -0.61 -28.74 11.38 -3.07 -0.03 -28.77 16 12 C 0.03 0.97 5.34 85.56 0.46 1.42 16 13 N -0.48 -14.31 5.23 -862.78 -4.51 -18.82 16 14 C 0.03 0.93 6.00 86.45 0.52 1.44 16 15 C -0.12 -2.98 6.93 31.47 0.22 -2.76 16 16 C -0.10 -2.56 6.50 31.80 0.21 -2.35 16 17 C 0.03 0.98 2.18 45.26 0.10 1.07 16 18 H 0.07 2.65 5.12 -2.38 -0.01 2.64 16 19 C 0.14 3.84 5.41 86.38 0.47 4.31 16 20 N -0.72 -20.52 4.55 -463.07 -2.11 -22.63 16 21 C 0.54 15.46 6.91 87.66 0.61 16.07 16 22 O -0.57 -19.21 15.88 -3.03 -0.05 -19.26 16 23 C -0.15 -3.69 1.25 -52.40 -0.07 -3.76 16 24 C 0.09 2.34 6.97 71.98 0.50 2.84 16 25 F -0.21 -5.98 14.57 44.97 0.66 -5.32 16 26 C -0.12 -2.66 6.97 31.18 0.22 -2.45 16 27 C -0.13 -2.72 7.57 31.18 0.24 -2.48 16 28 C -0.11 -2.34 6.96 31.12 0.22 -2.13 16 29 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 30 H 0.40 17.45 7.90 -92.71 -0.73 16.71 16 31 H 0.10 2.94 5.31 -2.39 -0.01 2.92 16 32 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.04 1.44 5.72 -2.39 -0.01 1.43 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.05 1.50 8.14 -2.38 -0.02 1.49 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 1.87 8.06 -2.39 -0.02 1.85 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 2.16 8.10 -2.39 -0.02 2.14 16 41 H 0.40 11.89 4.56 -92.71 -0.42 11.47 16 42 H 0.07 2.04 7.11 -2.39 -0.02 2.02 16 43 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.09 2.01 8.09 -2.38 -0.02 1.99 16 45 H 0.08 1.87 8.05 -2.39 -0.02 1.85 16 46 H 0.09 1.99 6.44 -2.39 -0.02 1.97 16 47 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 49 H 0.09 2.16 7.45 -2.38 -0.02 2.14 16 Total: -1.00 -60.61 381.95 -0.01 -60.62 By element: Atomic # 1 Polarization: 52.05 SS G_CDS: -0.17 Total: 51.89 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 5.51 Total: 12.54 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -7.96 Total: -114.68 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -0.08 Total: -48.03 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.66 Total: -5.32 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -60.61 -0.01 -60.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567379310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.552 kcal (2) G-P(sol) polarization free energy of solvation -60.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds