Wall clock time and date at job start Wed Apr 1 2020 00:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 119.99999 * 2 1 4 4 H 1.48506 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47073 * 300.00064 * 3 2 1 6 6 H 1.48498 * 109.46983 * 60.00024 * 3 2 1 7 7 C 1.38947 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00284 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99873 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00470 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99910 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47244 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00100 * 180.02562 * 13 12 10 15 15 C 1.50690 * 109.47364 * 179.97438 * 14 13 12 16 16 C 1.31002 * 120.00041 * 127.00513 * 15 14 13 17 17 C 1.50697 * 120.00083 * 7.55928 * 16 15 14 18 18 N 1.46504 * 109.47064 * 127.15710 * 17 16 15 19 19 C 1.34773 * 120.00245 * 180.02562 * 18 17 16 20 20 O 1.21284 * 119.99779 * 0.02562 * 19 18 17 21 21 C 1.50700 * 120.00495 * 179.97438 * 19 18 17 22 22 F 1.39899 * 109.47257 * 310.00509 * 21 19 18 23 23 C 1.53007 * 109.46499 * 70.00216 * 21 19 18 24 24 C 1.52999 * 109.46622 * 180.02562 * 23 21 19 25 25 C 1.52997 * 109.47445 * 299.99639 * 24 23 21 26 26 C 1.53010 * 109.46868 * 60.00170 * 25 24 23 27 27 C 1.52997 * 109.47296 * 189.99852 * 21 19 18 28 28 H 0.96999 * 120.00072 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99915 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47367 * 60.00345 * 12 10 9 31 31 H 1.09000 * 109.47060 * 300.00300 * 12 10 9 32 32 H 1.00901 * 110.99929 * 303.95529 * 13 12 10 33 33 H 1.09001 * 109.47261 * 59.99553 * 14 13 12 34 34 H 1.09001 * 109.47414 * 300.00164 * 14 13 12 35 35 H 1.08002 * 120.00047 * 307.00971 * 15 14 13 36 36 H 1.08000 * 119.99828 * 187.56415 * 16 15 14 37 37 H 1.08997 * 109.47135 * 7.16153 * 17 16 15 38 38 H 1.08998 * 109.47318 * 247.15371 * 17 16 15 39 39 H 0.97004 * 119.99927 * 0.02562 * 18 17 16 40 40 H 1.08993 * 109.47111 * 60.00576 * 23 21 19 41 41 H 1.08999 * 109.47196 * 299.99624 * 23 21 19 42 42 H 1.09009 * 109.47081 * 179.97438 * 24 23 21 43 43 H 1.09006 * 109.47254 * 60.00168 * 24 23 21 44 44 H 1.08994 * 109.47378 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.47454 * 300.00837 * 25 24 23 46 46 H 1.08999 * 109.46538 * 60.00106 * 26 25 24 47 47 H 1.08999 * 109.46962 * 180.02562 * 26 25 24 48 48 H 1.09002 * 109.46704 * 60.00613 * 27 21 19 49 49 H 1.08989 * 109.47312 * 300.00329 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 7 2.1984 -5.9795 -0.0027 14 6 1.4981 -7.2708 -0.0039 15 6 2.5075 -8.3897 -0.0050 16 6 2.4393 -9.3343 0.9001 17 6 1.2587 -9.3988 1.8345 18 7 0.6727 -10.7407 1.7890 19 6 -0.4020 -11.0329 2.5480 20 8 -0.8842 -10.1847 3.2684 21 6 -1.0052 -12.4131 2.5008 22 9 -1.2169 -12.7842 1.1686 23 6 -0.0510 -13.4095 3.1624 24 6 -0.6632 -14.8108 3.1139 25 6 -1.9983 -14.8103 3.8610 26 6 -2.9525 -13.8138 3.1994 27 6 -2.3402 -12.4120 3.2483 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 -0.0005 30 1 0.6168 -4.9201 -0.8919 31 1 0.6174 -4.9212 0.8880 32 1 2.8333 -5.9121 -0.7840 33 1 0.8734 -7.3446 -0.8941 34 1 0.8729 -7.3460 0.8858 35 1 3.2873 -8.4128 -0.7519 36 1 3.2293 -10.0668 0.9767 37 1 0.5124 -8.6659 1.5281 38 1 1.5871 -9.1801 2.8506 39 1 1.0581 -11.4190 1.2125 40 1 0.1138 -13.1204 4.2003 41 1 0.9000 -13.4102 2.6299 42 1 0.0168 -15.5209 3.5848 43 1 -0.8277 -15.0998 2.0758 44 1 -2.4346 -15.8085 3.8260 45 1 -1.8338 -14.5214 4.8990 46 1 -3.1171 -14.1028 2.1614 47 1 -3.9036 -13.8131 3.7319 48 1 -3.0199 -11.7022 2.7769 49 1 -2.1752 -12.1229 4.2861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568944744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:45 Heat of formation + Delta-G solvation = -116.092856 kcal Electronic energy + Delta-G solvation = -28734.704863 eV Core-core repulsion = 24417.822225 eV Total energy + Delta-G solvation = -4316.882639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.36723 -40.18121 -38.37076 -37.91725 -36.99627 -35.14743 -33.90690 -32.96752 -31.41898 -31.23507 -31.14904 -28.07672 -26.40925 -24.79850 -23.84139 -23.27639 -23.15905 -20.99716 -20.15866 -19.59995 -19.04746 -17.97976 -17.69134 -17.02999 -16.48092 -16.25695 -15.95643 -15.56389 -15.36303 -15.18459 -14.97627 -14.54494 -14.48998 -14.23011 -13.97060 -13.94911 -13.67947 -13.62770 -13.04816 -12.96989 -12.87527 -12.73937 -12.65547 -12.51622 -12.27460 -11.86006 -11.63149 -11.54064 -11.48745 -11.23264 -11.11200 -11.04941 -10.87799 -10.62357 -10.33220 -10.21500 -10.12175 -9.66018 -9.51006 -9.20710 -8.45752 -8.04783 -7.94767 -6.40517 -3.81418 1.75610 2.07944 2.79442 3.17499 3.27971 3.35387 3.78982 3.90414 3.91855 4.10077 4.13372 4.14528 4.41747 4.52019 4.53733 4.57960 4.69706 4.78315 4.80793 4.91033 5.01847 5.09610 5.16545 5.23153 5.26346 5.31475 5.36740 5.47222 5.51421 5.52574 5.58352 5.58825 5.67074 5.69384 5.72814 5.81034 5.89536 5.97863 5.99965 6.26520 6.33210 6.55510 7.03356 7.16793 7.56617 7.62979 7.71167 8.07632 8.62321 9.19018 9.55445 10.06719 10.77292 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.001530 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.690894 B =18294.490366 C =19015.754831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.049 3.951 13 N -0.663 5.663 14 C 0.068 3.932 15 C -0.108 4.108 16 C -0.185 4.185 17 C 0.138 3.862 18 N -0.714 5.714 19 C 0.497 3.503 20 O -0.520 6.520 21 C 0.112 3.888 22 F -0.193 7.193 23 C -0.137 4.137 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.125 4.125 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.350 0.650 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.403 0.597 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.611 -32.597 4.247 33.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.295 5.295 14 C -0.060 4.060 15 C -0.127 4.127 16 C -0.205 4.205 17 C 0.016 3.984 18 N -0.366 5.366 19 C 0.280 3.720 20 O -0.395 6.395 21 C 0.090 3.910 22 F -0.173 7.173 23 C -0.175 4.175 24 C -0.157 4.157 25 C -0.161 4.161 26 C -0.159 4.159 27 C -0.163 4.163 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.169 0.831 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.238 0.762 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.191 -31.770 5.420 32.500 hybrid contribution -0.268 0.569 -1.349 1.488 sum -4.459 -31.201 4.071 31.780 Atomic orbital electron populations 1.69621 1.05949 1.28061 1.50641 1.25269 0.95640 0.99743 0.97326 0.85791 0.79703 0.81102 0.77688 1.19210 1.20781 1.20740 1.19764 0.93417 0.82219 1.47498 0.87841 1.41869 1.09226 1.04600 1.64324 1.19777 0.88369 0.84694 0.84502 1.90521 1.13743 1.87062 1.55426 1.21701 0.94347 0.90920 1.01351 1.60112 1.18700 0.99351 1.51339 1.21293 0.94917 0.88443 1.01362 1.22859 0.98854 0.94253 0.96726 1.22634 0.98550 1.01894 0.97383 1.20583 0.94241 0.83475 1.00073 1.45997 1.30953 1.14776 1.44835 1.20839 0.80755 0.89682 0.80688 1.90769 1.60951 1.48216 1.39535 1.21197 0.98393 0.92086 0.79324 1.92890 1.96163 1.92533 1.35724 1.22129 0.97958 0.95073 1.02339 1.21516 0.96994 0.95356 1.01791 1.21598 0.95265 0.99581 0.99672 1.21570 0.98794 0.93666 1.01886 1.21927 0.93768 0.98599 1.01966 0.91918 0.77432 0.93764 0.89489 0.83097 0.94396 0.89684 0.86439 0.86340 0.89737 0.90355 0.76204 0.89391 0.90266 0.90945 0.91022 0.91409 0.91593 0.91200 0.90917 0.90070 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.54 5.29 -10.96 -0.06 -14.59 16 10 C 0.44 10.62 7.82 -10.99 -0.09 10.53 16 11 O -0.58 -16.08 15.78 5.55 0.09 -15.99 16 12 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 13 N -0.66 -10.85 6.12 -116.34 -0.71 -11.56 16 14 C 0.07 0.85 5.77 -4.98 -0.03 0.82 16 15 C -0.11 -1.11 9.77 -36.03 -0.35 -1.46 16 16 C -0.19 -1.65 9.63 -36.03 -0.35 -1.99 16 17 C 0.14 1.37 5.76 -5.19 -0.03 1.34 16 18 N -0.71 -6.15 5.52 -61.47 -0.34 -6.49 16 19 C 0.50 5.13 6.79 -10.99 -0.07 5.05 16 20 O -0.52 -7.26 15.98 5.55 0.09 -7.17 16 21 C 0.11 0.88 1.05 -91.77 -0.10 0.78 16 22 F -0.19 -1.67 15.70 2.25 0.04 -1.63 16 23 C -0.14 -0.76 4.98 -26.73 -0.13 -0.89 16 24 C -0.12 -0.55 5.80 -26.73 -0.16 -0.71 16 25 C -0.12 -0.58 5.92 -26.73 -0.16 -0.73 16 26 C -0.12 -0.70 5.80 -26.70 -0.15 -0.85 16 27 C -0.12 -0.95 4.35 -26.71 -0.12 -1.07 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.35 5.78 8.42 -39.29 -0.33 5.45 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 1.07 5.30 -51.93 -0.28 0.79 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.08 0.96 5.30 -51.93 -0.28 0.68 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.40 2.54 8.43 -40.82 -0.34 2.19 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 43 H 0.07 0.37 7.80 -51.93 -0.41 -0.04 16 44 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.07 0.43 7.80 -51.93 -0.41 0.02 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.09 0.71 7.99 -51.93 -0.41 0.29 16 LS Contribution 403.18 15.07 6.08 6.08 Total: -1.00 -33.58 403.18 -8.90 -42.48 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -7.78 Total: 13.19 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -2.00 Total: 3.56 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.38 Total: -56.74 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.18 Total: -23.16 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.58 -8.90 -42.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568944744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.609 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds