Wall clock time and date at job start Wed Apr 1 2020 01:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 119.99771 * 2 1 4 4 H 1.48496 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47077 * 300.00267 * 3 2 1 6 6 H 1.48504 * 109.46947 * 59.99647 * 3 2 1 7 7 C 1.38941 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00479 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00003 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00328 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00035 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47217 * 180.02562 * 12 10 9 14 14 C 1.46897 * 110.99751 * 177.90637 * 13 12 10 15 15 C 1.53004 * 115.55195 * 294.30778 * 14 13 12 16 16 N 1.46504 * 109.47031 * 272.75493 * 15 14 13 17 17 C 1.34780 * 119.99865 * 174.95551 * 16 15 14 18 18 O 1.21283 * 119.99668 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00011 * 179.97438 * 17 16 15 20 20 H 1.09004 * 109.47404 * 299.99617 * 19 17 16 21 21 C 1.53001 * 109.47472 * 179.97438 * 19 17 16 22 22 C 1.52996 * 109.47463 * 179.97438 * 21 19 17 23 23 C 1.53003 * 109.47040 * 59.99895 * 22 21 19 24 24 C 1.52994 * 109.47291 * 300.00216 * 23 22 21 25 25 H 1.09001 * 109.47307 * 179.97438 * 24 23 22 26 26 F 1.39902 * 109.46880 * 300.00096 * 24 23 22 27 27 C 1.53003 * 109.47099 * 59.99366 * 19 17 16 28 28 C 1.52998 * 117.50363 * 79.98246 * 14 13 12 29 29 C 1.53008 * 117.49835 * 148.64352 * 14 13 12 30 30 H 0.96998 * 120.00425 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00063 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47008 * 59.99925 * 12 10 9 33 33 H 1.09000 * 109.47357 * 300.00062 * 12 10 9 34 34 H 1.00903 * 111.00032 * 301.85878 * 13 12 10 35 35 H 1.08989 * 109.47530 * 152.75153 * 15 14 13 36 36 H 1.09006 * 109.46873 * 32.74526 * 15 14 13 37 37 H 0.97001 * 120.00246 * 354.94517 * 16 15 14 38 38 H 1.09004 * 109.46618 * 59.99744 * 21 19 17 39 39 H 1.09004 * 109.46891 * 300.00418 * 21 19 17 40 40 H 1.08998 * 109.47318 * 180.02562 * 22 21 19 41 41 H 1.08999 * 109.46791 * 300.00055 * 22 21 19 42 42 H 1.08999 * 109.47198 * 60.00409 * 23 22 21 43 43 H 1.09003 * 109.46753 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47198 * 60.00456 * 27 19 17 45 45 H 1.09002 * 109.47219 * 299.99765 * 27 19 17 46 46 H 1.08998 * 117.50078 * 214.99962 * 28 14 13 47 47 H 1.09003 * 117.49799 * 0.02562 * 28 14 13 48 48 H 1.08993 * 117.49593 * 359.97282 * 29 14 13 49 49 H 1.09003 * 117.49517 * 144.99659 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8891 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0888 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5577 -0.0016 11 8 3.2104 -3.5577 -0.0011 12 6 1.2440 -4.8629 -0.0022 13 7 2.1986 -5.9794 -0.0014 14 6 1.4990 -7.2701 0.0481 15 6 0.7193 -7.5492 1.3346 16 7 1.6097 -8.1655 2.3214 17 6 1.1661 -8.4079 3.5708 18 8 0.0299 -8.1155 3.8782 19 6 2.0817 -9.0424 4.5856 20 1 2.4015 -10.0202 4.2254 21 6 1.3376 -9.2056 5.9125 22 6 2.2670 -9.8503 6.9426 23 6 3.4930 -8.9590 7.1517 24 6 4.2371 -8.7958 5.8250 25 1 5.1103 -8.1605 5.9738 26 9 4.6466 -10.0511 5.3625 27 6 3.3071 -8.1504 4.7950 28 6 0.9190 -7.8101 -1.2606 29 6 2.1621 -8.4603 -0.6482 30 1 -0.4851 0.8400 -0.0004 31 1 0.3535 -2.3907 -0.0024 32 1 0.6176 -4.9205 -0.8925 33 1 0.6169 -4.9209 0.8875 34 1 2.8122 -5.9311 -0.8011 35 1 -0.1076 -8.2256 1.1189 36 1 0.3284 -6.6128 1.7329 37 1 2.5185 -8.3991 2.0755 38 1 0.4644 -9.8409 5.7635 39 1 1.0181 -8.2276 6.2725 40 1 1.7367 -9.9669 7.8877 41 1 2.5860 -10.8283 6.5823 42 1 3.1740 -7.9810 7.5121 43 1 4.1554 -9.4186 7.8853 44 1 2.9874 -7.1726 5.1553 45 1 3.8374 -8.0338 3.8498 46 1 -0.0181 -8.3641 -1.2051 47 1 1.0569 -7.2078 -2.1586 48 1 3.1172 -8.2854 -1.1434 49 1 2.0428 -9.4420 -0.1897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569400481.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:12 Heat of formation + Delta-G solvation = -140.896592 kcal Electronic energy + Delta-G solvation = -30027.676806 eV Core-core repulsion = 25709.718597 eV Total energy + Delta-G solvation = -4317.958209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.58936 -41.23707 -40.33968 -39.33285 -37.96941 -36.04227 -35.27418 -33.93803 -33.21419 -32.27991 -31.30487 -28.38555 -28.10716 -25.89805 -24.61322 -23.62154 -23.35791 -21.43006 -21.15099 -20.84383 -20.43314 -19.92744 -18.48184 -17.89985 -17.24086 -17.12239 -16.82965 -16.76220 -16.42158 -16.32880 -15.96918 -15.86116 -15.77827 -15.46993 -15.18113 -14.74575 -14.61741 -14.32993 -14.17033 -13.83133 -13.58718 -13.52352 -13.41288 -13.27750 -12.98423 -12.89854 -12.80913 -12.52091 -12.42943 -12.42089 -12.15736 -12.12329 -11.87688 -11.70548 -11.53104 -11.49567 -11.22460 -11.03450 -10.69248 -10.34273 -10.07994 -10.03903 -9.28490 -8.48490 -5.97693 1.35393 1.40779 1.55165 1.59999 2.01673 2.09275 2.26545 2.62780 3.01737 3.18634 3.41657 3.44518 3.52700 3.59004 3.64822 3.76191 3.86255 3.97840 4.04835 4.09999 4.17102 4.25264 4.35686 4.36981 4.42133 4.49153 4.52757 4.56622 4.61651 4.68399 4.74692 4.79507 4.91326 4.97859 5.01927 5.05848 5.15980 5.19522 5.21503 5.27393 5.39166 5.40557 5.47863 5.83311 6.04413 6.32371 6.55007 6.56912 7.10104 7.23290 7.53108 8.07594 8.69216 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.010928 B = 0.002469 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.663663 B =11340.160376 C =12587.114207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.439 3.561 11 O -0.620 6.620 12 C 0.067 3.933 13 N -0.636 5.636 14 C 0.021 3.979 15 C 0.168 3.832 16 N -0.708 5.708 17 C 0.513 3.487 18 O -0.585 6.585 19 C -0.097 4.097 20 H 0.114 0.886 21 C -0.099 4.099 22 C -0.115 4.115 23 C -0.147 4.147 24 C 0.094 3.906 25 H 0.103 0.897 26 F -0.222 7.222 27 C -0.138 4.138 28 C -0.198 4.198 29 C -0.145 4.145 30 H 0.278 0.722 31 H 0.395 0.605 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.351 0.649 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.413 0.587 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.112 0.888 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 -22.827 8.094 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.507 6.507 12 C -0.065 4.065 13 N -0.267 5.267 14 C -0.071 4.071 15 C 0.044 3.956 16 N -0.359 5.359 17 C 0.301 3.699 18 O -0.465 6.465 19 C -0.118 4.118 20 H 0.132 0.868 21 C -0.137 4.137 22 C -0.153 4.153 23 C -0.185 4.185 24 C 0.058 3.942 25 H 0.121 0.879 26 F -0.203 7.203 27 C -0.176 4.176 28 C -0.238 4.238 29 C -0.183 4.183 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.171 0.829 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.249 0.751 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.130 0.870 47 H 0.114 0.886 48 H 0.124 0.876 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.340 -22.431 8.969 24.388 hybrid contribution -0.299 1.039 -1.246 1.650 sum 3.041 -21.392 7.723 22.946 Atomic orbital electron populations 1.69681 1.06917 1.29286 1.50329 1.26069 0.96538 1.02520 0.96237 0.84860 0.78083 0.76998 0.78331 1.19622 1.19508 1.19693 1.19703 0.92704 0.83924 1.49871 0.90190 1.41948 1.09321 1.04806 1.64970 1.20769 0.88230 0.86003 0.82306 1.90488 1.15612 1.87935 1.56635 1.21466 0.94140 0.88211 1.02708 1.59787 1.18637 0.98915 1.49374 1.21787 1.02273 0.90172 0.92874 1.20633 0.91441 0.97634 0.85881 1.45913 1.17195 1.61988 1.10831 1.21097 0.87911 0.77837 0.83097 1.90686 1.21750 1.54112 1.79937 1.21277 0.94834 1.00858 0.94868 0.86767 1.21346 0.97870 1.01512 0.92978 1.21497 0.95487 0.99020 0.99275 1.22186 0.97752 1.02360 0.96193 1.21648 0.97951 0.80680 0.93946 0.87950 1.92777 1.92042 1.44947 1.90530 1.22152 0.95025 0.99320 1.01078 1.23701 0.99113 1.04520 0.96437 1.23263 0.97465 0.96005 1.01548 0.91283 0.77104 0.91444 0.88891 0.82888 0.90177 0.92981 0.75054 0.91838 0.92391 0.90070 0.91229 0.89405 0.89447 0.90037 0.89718 0.87006 0.88646 0.87645 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 3 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 8 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 9 N -0.57 -29.77 5.29 -306.99 -1.62 -31.39 16 10 C 0.44 20.96 7.82 87.66 0.69 21.64 16 11 O -0.62 -34.02 15.83 -3.08 -0.05 -34.07 16 12 C 0.07 2.31 6.03 85.56 0.52 2.83 16 13 N -0.64 -18.96 6.26 -474.12 -2.97 -21.93 16 14 C 0.02 0.46 1.90 3.53 0.01 0.47 16 15 C 0.17 3.95 5.75 86.38 0.50 4.44 16 16 N -0.71 -15.04 5.36 -463.05 -2.48 -17.53 16 17 C 0.51 12.48 7.15 87.65 0.63 13.10 16 18 O -0.58 -19.14 15.98 -3.04 -0.05 -19.19 16 19 C -0.10 -1.74 2.40 -11.54 -0.03 -1.77 16 20 H 0.11 1.75 7.80 -2.38 -0.02 1.73 16 21 C -0.10 -1.77 4.49 30.59 0.14 -1.64 16 22 C -0.12 -1.51 5.80 30.59 0.18 -1.33 16 23 C -0.15 -1.72 5.72 30.59 0.17 -1.55 16 24 C 0.09 1.28 4.13 30.61 0.13 1.40 16 25 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 26 F -0.22 -3.79 16.04 44.97 0.72 -3.07 16 27 C -0.14 -2.23 4.90 30.61 0.15 -2.08 16 28 C -0.20 -3.42 10.07 30.62 0.31 -3.12 16 29 C -0.15 -2.25 9.56 30.62 0.29 -1.96 16 30 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 32 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.09 3.15 6.55 -2.39 -0.02 3.14 16 34 H 0.35 10.72 8.38 -89.69 -0.75 9.97 16 35 H 0.08 1.73 7.89 -2.39 -0.02 1.71 16 36 H 0.05 1.53 6.46 -2.38 -0.02 1.51 16 37 H 0.41 7.14 7.59 -92.71 -0.70 6.44 16 38 H 0.06 1.24 8.10 -2.38 -0.02 1.22 16 39 H 0.06 1.21 8.10 -2.38 -0.02 1.19 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.92 7.80 -2.39 -0.02 0.90 16 42 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.08 1.33 7.56 -2.39 -0.02 1.31 16 46 H 0.11 1.66 8.04 -2.39 -0.02 1.64 16 47 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -72.01 400.49 -0.38 -72.39 By element: Atomic # 1 Polarization: 48.87 SS G_CDS: -1.20 Total: 47.67 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 4.95 Total: 11.98 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -6.79 Total: -120.83 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -0.10 Total: -53.26 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.72 Total: -3.07 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -72.01 -0.38 -72.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569400481.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.506 kcal (2) G-P(sol) polarization free energy of solvation -72.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds