Wall clock time and date at job start Wed Apr 1 2020 00:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00302 * 66.03980 * 13 12 10 15 15 C 1.53040 * 109.52612 * 185.83953 * 14 13 12 16 16 C 1.53121 * 109.27852 * 300.82379 * 15 14 13 17 17 C 1.53122 * 109.15829 * 57.65537 * 16 15 14 18 18 H 1.08994 * 109.50471 * 62.32443 * 17 16 15 19 19 N 1.46502 * 109.50215 * 182.40392 * 17 16 15 20 20 C 1.34775 * 120.00271 * 274.99957 * 19 17 16 21 21 O 1.21283 * 119.99533 * 359.97438 * 20 19 17 22 22 C 1.50696 * 120.00539 * 179.97438 * 20 19 17 23 23 F 1.39902 * 110.01154 * 54.29696 * 22 20 19 24 24 C 1.54266 * 110.03533 * 292.91039 * 22 20 19 25 25 C 1.54960 * 104.15878 * 217.13596 * 24 22 20 26 26 C 1.54885 * 102.77978 * 37.88443 * 25 24 22 27 27 C 1.53871 * 110.03301 * 175.68699 * 22 20 19 28 28 C 1.46850 * 111.00092 * 190.25451 * 13 12 10 29 29 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 32 32 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 33 33 H 1.09000 * 109.46560 * 305.86063 * 14 13 12 34 34 H 1.09005 * 109.45982 * 65.82575 * 14 13 12 35 35 H 1.09004 * 109.50209 * 60.76140 * 15 14 13 36 36 H 1.08996 * 109.50263 * 180.84485 * 15 14 13 37 37 H 1.09005 * 109.52136 * 177.55753 * 16 15 14 38 38 H 1.08997 * 109.52573 * 297.68207 * 16 15 14 39 39 H 0.96999 * 120.00375 * 94.99431 * 19 17 16 40 40 H 1.09004 * 110.48226 * 335.78078 * 24 22 20 41 41 H 1.09000 * 110.48822 * 98.41937 * 24 22 20 42 42 H 1.09002 * 110.71530 * 279.56912 * 25 24 22 43 43 H 1.09007 * 110.92256 * 156.29442 * 25 24 22 44 44 H 1.09007 * 110.48426 * 203.40534 * 26 25 24 45 45 H 1.08997 * 110.60137 * 80.82110 * 26 25 24 46 46 H 1.09006 * 110.03307 * 238.56960 * 27 22 20 47 47 H 1.08996 * 110.03598 * 359.95771 * 27 22 20 48 48 H 1.08998 * 109.45898 * 294.17075 * 28 13 12 49 49 H 1.09001 * 109.46248 * 54.14334 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.9634 -6.0118 1.2713 15 6 4.0435 -7.0923 1.1834 16 6 3.3813 -8.4500 0.9328 17 6 2.5518 -8.3750 -0.3521 18 1 3.2078 -8.1653 -1.1970 19 7 1.8687 -9.6528 -0.5686 20 6 2.5078 -10.6612 -1.1938 21 8 3.6484 -10.5106 -1.5777 22 6 1.8054 -11.9758 -1.4160 23 9 0.5927 -11.7643 -2.0808 24 6 1.5520 -12.6747 -0.0643 25 6 1.7697 -14.1785 -0.3684 26 6 2.9605 -14.1589 -1.3587 27 6 2.7001 -12.9191 -2.2390 28 6 1.5148 -7.2573 -0.2196 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6167 -4.9162 0.9030 32 1 0.6174 -4.9252 -0.8769 33 1 3.4325 -5.0417 1.4355 34 1 2.2925 -6.2355 2.1008 35 1 4.7229 -6.8618 0.3627 36 1 4.6015 -7.1261 2.1191 37 1 4.1495 -9.2159 0.8263 38 1 2.7324 -8.6993 1.7724 39 1 0.9564 -9.7731 -0.2618 40 1 2.2663 -12.3296 0.6833 41 1 0.5306 -12.4965 0.2718 42 1 0.8847 -14.6092 -0.8369 43 1 2.0300 -14.7253 0.5380 44 1 2.9662 -15.0639 -1.9664 45 1 3.9036 -14.0547 -0.8224 46 1 2.1891 -13.2128 -3.1560 47 1 3.6421 -12.4258 -2.4784 48 1 0.8508 -7.4752 0.6169 49 1 0.9320 -7.1918 -1.1384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660829823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:25 Heat of formation + Delta-G solvation = -150.687474 kcal Electronic energy + Delta-G solvation = -30219.580187 eV Core-core repulsion = 25901.197413 eV Total energy + Delta-G solvation = -4318.382774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.98000 -41.36829 -40.48754 -39.21020 -37.81604 -36.20169 -35.67097 -33.89221 -33.19557 -31.25499 -29.84476 -29.43410 -28.84461 -26.51502 -24.61539 -24.07323 -22.83013 -21.84112 -21.26662 -21.01266 -20.60095 -19.86213 -19.12050 -17.77002 -17.70597 -17.13476 -16.67866 -16.52628 -16.37713 -16.28884 -15.86658 -15.74671 -15.64285 -15.26098 -15.16672 -14.84800 -14.67383 -14.50480 -14.42442 -14.11834 -13.86915 -13.52565 -13.44385 -13.08652 -13.01261 -12.70455 -12.54999 -12.42599 -12.40203 -12.17789 -12.14424 -12.12606 -11.97253 -11.88066 -11.81383 -11.61593 -11.50432 -11.40592 -10.85255 -10.28045 -10.21532 -9.98672 -9.21903 -8.45572 -5.93826 1.27038 1.39723 1.41618 1.52196 1.75772 2.06925 2.29487 2.78423 3.09463 3.21247 3.26229 3.37724 3.43435 3.58408 3.71900 3.81162 4.01227 4.14294 4.20564 4.26181 4.28250 4.33919 4.37005 4.41626 4.42179 4.52520 4.58336 4.58603 4.65186 4.69629 4.81557 4.86694 4.96639 4.96884 5.01623 5.09036 5.15750 5.17955 5.21941 5.29812 5.37670 5.38131 5.42026 5.88027 6.07781 6.19732 6.31232 6.62220 6.97370 7.14389 7.58114 8.14350 8.71527 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.030380 B = 0.001926 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.451659 B =14536.676842 C =14879.298722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.614 6.614 12 C 0.061 3.939 13 N -0.536 5.536 14 C 0.054 3.946 15 C -0.105 4.105 16 C -0.116 4.116 17 C 0.153 3.847 18 H 0.066 0.934 19 N -0.700 5.700 20 C 0.501 3.499 21 O -0.558 6.558 22 C 0.102 3.898 23 F -0.197 7.197 24 C -0.138 4.138 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.148 4.148 28 C 0.056 3.944 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.417 0.583 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.041 -29.419 2.751 29.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.500 6.500 12 C -0.070 4.070 13 N -0.261 5.261 14 C -0.074 4.074 15 C -0.144 4.144 16 C -0.155 4.155 17 C 0.048 3.952 18 H 0.084 0.916 19 N -0.351 5.351 20 C 0.286 3.714 21 O -0.435 6.435 22 C 0.081 3.919 23 F -0.178 7.178 24 C -0.175 4.175 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.186 4.186 28 C -0.072 4.072 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.254 0.746 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.099 0.901 48 H 0.083 0.917 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.282 -29.051 2.072 29.153 hybrid contribution -0.960 1.288 0.347 1.643 sum -2.242 -27.762 2.418 27.958 Atomic orbital electron populations 1.69663 1.06740 1.29281 1.50422 1.26011 0.96557 1.02326 0.96420 0.85011 0.77766 0.76816 0.78872 1.19932 1.19482 1.19701 1.19600 0.92643 0.84020 1.49838 0.90411 1.41920 1.09300 1.04642 1.65322 1.20779 0.88324 0.85952 0.82174 1.90476 1.15739 1.87738 1.56028 1.21696 0.93407 0.88181 1.03725 1.61271 1.25868 1.01985 1.36972 1.22187 0.95859 1.00278 0.89053 1.21443 0.97351 0.93392 1.02184 1.21868 0.99424 0.97050 0.97152 1.20793 0.93943 0.81936 0.98531 0.91587 1.45828 1.18277 1.12345 1.58629 1.21155 0.86943 0.86189 0.77156 1.90717 1.19597 1.81985 1.51244 1.21944 0.81190 0.92694 0.96098 1.92912 1.46297 1.95971 1.82593 1.23045 1.04919 0.96815 0.92756 1.22555 0.98611 0.94205 1.00268 1.22368 0.99164 0.96762 0.97473 1.22789 1.00389 0.96082 0.99377 1.22259 0.94824 0.87529 1.02633 0.91344 0.76994 0.90847 0.87166 0.91883 0.93857 0.93260 0.89711 0.91963 0.89751 0.74627 0.89186 0.87642 0.90062 0.88842 0.89383 0.91137 0.89434 0.90083 0.91743 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.33 -18.85 9.68 84.04 0.81 -18.03 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -29.36 5.29 -306.98 -1.62 -30.98 16 10 C 0.44 20.86 7.46 87.66 0.65 21.52 16 11 O -0.61 -33.91 13.92 -3.07 -0.04 -33.96 16 12 C 0.06 2.05 5.45 85.56 0.47 2.52 16 13 N -0.54 -17.02 4.39 -900.91 -3.96 -20.98 16 14 C 0.05 1.68 5.11 86.33 0.44 2.12 16 15 C -0.11 -2.83 6.09 30.65 0.19 -2.64 16 16 C -0.12 -2.54 5.58 30.68 0.17 -2.37 16 17 C 0.15 3.54 2.62 45.05 0.12 3.66 16 18 H 0.07 2.03 7.58 -2.39 -0.02 2.01 16 19 N -0.70 -12.64 5.08 -442.28 -2.25 -14.89 16 20 C 0.50 10.87 6.67 87.66 0.58 11.46 16 21 O -0.56 -16.65 14.88 -3.04 -0.05 -16.70 16 22 C 0.10 1.65 1.48 -10.82 -0.02 1.63 16 23 F -0.20 -3.53 16.78 44.97 0.75 -2.77 16 24 C -0.14 -1.34 6.14 31.69 0.19 -1.15 16 25 C -0.12 -0.90 6.91 31.91 0.22 -0.68 16 26 C -0.12 -1.24 6.83 31.67 0.22 -1.03 16 27 C -0.15 -2.35 6.25 31.32 0.20 -2.16 16 28 C 0.06 1.26 4.93 86.33 0.43 1.68 16 29 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.40 19.15 7.90 -92.71 -0.73 18.41 16 31 H 0.07 2.13 8.12 -2.39 -0.02 2.12 16 32 H 0.11 3.27 7.98 -2.39 -0.02 3.25 16 33 H 0.06 2.55 5.80 -2.39 -0.01 2.54 16 34 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.42 5.03 8.60 -92.71 -0.80 4.23 16 40 H 0.09 0.87 7.85 -2.38 -0.02 0.85 16 41 H 0.11 0.70 8.11 -2.39 -0.02 0.68 16 42 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 44 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.09 1.29 8.02 -2.38 -0.02 1.27 16 47 H 0.08 1.68 6.40 -2.39 -0.02 1.66 16 48 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.09 1.86 8.01 -2.39 -0.02 1.84 16 Total: -1.00 -72.54 392.22 -0.27 -72.81 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -0.56 Total: 35.27 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 5.14 Total: 16.28 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -7.54 Total: -116.16 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.09 Total: -50.65 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.75 Total: -2.77 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.54 -0.27 -72.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660829823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.875 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds