Wall clock time and date at job start Wed Apr 1 2020 00:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99633 * 2 1 4 4 H 1.48501 * 109.46855 * 240.00290 * 3 2 1 5 5 H 1.48504 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47146 * 120.00271 * 3 2 1 7 7 C 1.38807 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00039 * 160.28864 * 7 2 1 9 9 N 1.36930 * 120.00205 * 340.28400 * 7 2 1 10 10 C 1.46503 * 119.99969 * 320.53766 * 9 7 2 11 11 C 1.53001 * 109.46911 * 269.99775 * 10 9 7 12 12 C 1.53001 * 109.47288 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47179 * 180.02562 * 12 11 10 14 14 C 1.34784 * 119.99900 * 179.97438 * 13 12 11 15 15 O 1.21277 * 119.99754 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99971 * 179.97438 * 14 13 12 17 17 C 1.50692 * 109.47096 * 180.02562 * 16 14 13 18 18 C 1.34243 * 126.50071 * 264.68900 * 17 16 14 19 19 N 1.36833 * 109.93062 * 179.83177 * 18 17 16 20 20 H 0.97001 * 125.06766 * 180.18369 * 19 18 17 21 21 C 1.37688 * 109.87232 * 0.44682 * 19 18 17 22 22 C 1.39123 * 133.50924 * 179.71848 * 21 19 18 23 23 C 1.37749 * 119.78280 * 180.02562 * 22 21 19 24 24 C 1.38841 * 120.66262 * 359.97438 * 23 22 21 25 25 C 1.36617 * 120.52731 * 0.02562 * 24 23 22 26 26 C 1.39631 * 119.76662 * 0.02562 * 25 24 23 27 27 C 1.46497 * 120.00700 * 140.53333 * 9 7 2 28 28 C 1.53010 * 117.49191 * 3.28927 * 27 9 7 29 29 C 1.53003 * 59.99957 * 252.51124 * 28 27 9 30 30 H 0.97000 * 120.00354 * 355.00578 * 1 2 3 31 31 H 1.09001 * 109.47165 * 29.99118 * 10 9 7 32 32 H 1.08996 * 109.47790 * 149.99725 * 10 9 7 33 33 H 1.09002 * 109.47552 * 299.99881 * 11 10 9 34 34 H 1.08999 * 109.47078 * 59.99919 * 11 10 9 35 35 H 1.09008 * 109.46734 * 299.99733 * 12 11 10 36 36 H 1.08996 * 109.47538 * 59.99874 * 12 11 10 37 37 H 0.96997 * 120.00351 * 0.02562 * 13 12 11 38 38 H 1.09002 * 109.46801 * 300.00378 * 16 14 13 39 39 H 1.08996 * 109.47030 * 59.99661 * 16 14 13 40 40 H 1.07995 * 125.03488 * 359.97438 * 18 17 16 41 41 H 1.08007 * 120.11157 * 0.02562 * 22 21 19 42 42 H 1.07993 * 119.66874 * 180.02562 * 23 22 21 43 43 H 1.08003 * 119.73126 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.11443 * 179.97438 * 25 24 23 45 45 H 1.08995 * 115.55377 * 148.99346 * 27 9 7 46 46 H 1.08990 * 117.50193 * 0.02562 * 28 27 9 47 47 H 1.09008 * 117.49268 * 145.02347 * 28 27 9 48 48 H 1.09004 * 117.49896 * 252.51715 * 29 28 27 49 49 H 1.08992 * 117.51607 * 107.48005 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6965 -1.2126 5 1 1.2850 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0428 -1.2293 -0.3160 9 7 1.3859 -2.3534 0.3990 10 6 0.4640 -2.3296 1.5374 11 6 1.2392 -2.6057 2.8272 12 6 0.2766 -2.5803 4.0162 13 7 1.0191 -2.8440 5.2513 14 6 0.3726 -2.8700 6.4337 15 8 -0.8236 -2.6745 6.4751 16 6 1.1362 -3.1419 7.7042 17 6 0.1881 -3.1167 8.8752 18 6 -0.0626 -2.0698 9.6773 19 7 -0.9815 -2.4206 10.6285 20 1 -1.3220 -1.8304 11.3189 21 6 -1.3465 -3.7379 10.4635 22 6 -2.2206 -4.5818 11.1412 23 6 -2.3741 -5.8857 10.7243 24 6 -1.6649 -6.3681 9.6325 25 6 -0.8013 -5.5568 8.9525 26 6 -0.6296 -4.2319 9.3586 27 6 1.6396 -3.6090 -0.3118 28 6 2.6701 -3.5847 -1.4426 29 6 1.1797 -3.7016 -1.7682 30 1 -0.4850 0.8368 0.0731 31 1 -0.0097 -1.3500 1.6009 32 1 -0.3004 -3.0948 1.4021 33 1 1.7131 -3.5853 2.7638 34 1 2.0036 -1.8405 2.9626 35 1 -0.1968 -1.6004 4.0795 36 1 -0.4880 -3.3452 3.8811 37 1 1.9760 -2.9993 5.2183 38 1 1.6092 -4.1218 7.6410 39 1 1.9011 -2.3772 7.8390 40 1 0.3919 -1.0946 9.5841 41 1 -2.7771 -4.2158 11.9914 42 1 -3.0534 -6.5390 11.2515 43 1 -1.7971 -7.3929 9.3184 44 1 -0.2527 -5.9391 8.1044 45 1 1.5779 -4.5130 0.2940 46 1 3.1595 -2.6348 -1.6573 47 1 3.2866 -4.4730 -1.5807 48 1 0.8157 -4.6668 -2.1205 49 1 0.6880 -2.8286 -2.1971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690013928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:54 Heat of formation + Delta-G solvation = 60.860873 kcal Electronic energy + Delta-G solvation = -28227.314995 eV Core-core repulsion = 24348.874870 eV Total energy + Delta-G solvation = -3878.440124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.42118 -39.27705 -37.11292 -37.00971 -35.18708 -33.49803 -33.19005 -31.59519 -30.42844 -29.47505 -29.25767 -27.25875 -25.13341 -23.39461 -22.97645 -21.90336 -21.41432 -20.93730 -20.67445 -19.68240 -19.26616 -17.96951 -16.78359 -16.54817 -16.37220 -15.70680 -15.52531 -15.41706 -15.04440 -14.64944 -14.49547 -14.31854 -14.07222 -13.89852 -13.60477 -13.31651 -12.95083 -12.76317 -12.59367 -12.23732 -12.07419 -11.88198 -11.79625 -11.57307 -11.39377 -10.97822 -10.94700 -10.78811 -10.73945 -10.64301 -10.20701 -10.09309 -9.86276 -9.64527 -9.54867 -9.47811 -9.23244 -8.74062 -8.47457 -8.32702 -7.77970 -6.52755 -5.78433 -3.45931 1.01158 1.52322 2.47644 2.88901 2.96869 3.33572 3.40676 3.41231 3.54747 3.84888 4.43111 4.56554 4.63406 4.77632 4.94595 4.96013 5.04582 5.08716 5.18542 5.21652 5.32846 5.36623 5.41227 5.54936 5.68826 5.69851 5.75457 5.82675 5.93795 5.99021 6.05665 6.15717 6.30036 6.34303 6.42213 6.45776 6.49178 6.52139 6.56013 6.64384 6.68691 6.71293 6.84463 7.03437 7.06456 7.12565 7.26245 7.36617 7.63948 7.77662 7.78796 8.48741 8.50377 9.15197 9.76217 10.35237 11.16048 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.002050 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.428856 B =13652.702289 C =14777.692022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.015 3.985 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.261 4.261 8 H 0.063 0.937 9 N -0.551 5.551 10 C 0.154 3.846 11 C -0.145 4.145 12 C 0.122 3.878 13 N -0.730 5.730 14 C 0.506 3.494 15 O -0.534 6.534 16 C -0.066 4.066 17 C -0.149 4.149 18 C 0.062 3.938 19 N -0.595 5.595 20 H 0.415 0.585 21 C 0.095 3.905 22 C -0.132 4.132 23 C -0.102 4.102 24 C -0.149 4.149 25 C -0.067 4.067 26 C -0.089 4.089 27 C 0.121 3.879 28 C -0.196 4.196 29 C -0.222 4.222 30 H 0.256 0.744 31 H 0.095 0.905 32 H 0.028 0.972 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.398 0.602 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.169 0.831 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -8.894 22.032 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.186 4.186 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.391 4.391 8 H 0.080 0.920 9 N -0.268 5.268 10 C 0.028 3.972 11 C -0.185 4.185 12 C -0.002 4.002 13 N -0.382 5.382 14 C 0.291 3.709 15 O -0.410 6.410 16 C -0.107 4.107 17 C -0.157 4.157 18 C -0.064 4.064 19 N -0.198 5.198 20 H 0.251 0.749 21 C -0.012 4.012 22 C -0.153 4.153 23 C -0.121 4.121 24 C -0.168 4.168 25 C -0.085 4.085 26 C -0.094 4.094 27 C 0.012 3.988 28 C -0.234 4.234 29 C -0.263 4.263 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.231 0.769 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.186 0.814 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.083 -8.468 22.068 23.637 hybrid contribution 0.701 1.183 0.121 1.381 sum 0.618 -7.284 22.189 23.362 Atomic orbital electron populations 1.70045 1.05507 1.26343 1.50413 1.25251 0.94996 0.98800 0.99545 0.86500 0.79240 0.83495 0.78314 1.20661 1.21576 1.20818 1.18962 0.93237 0.85060 1.41824 0.91989 1.43336 1.50923 1.03096 1.29428 1.20758 0.90519 1.02654 0.83303 1.22441 0.99214 1.01200 0.95664 1.21410 0.95079 1.01159 0.82519 1.46191 1.12077 1.72934 1.06952 1.20652 0.88254 0.77102 0.84857 1.90713 1.14979 1.48330 1.86940 1.19951 0.96759 1.04271 0.89696 1.19551 1.03785 0.93089 0.99265 1.21544 0.94417 0.99151 0.91292 1.41655 1.38584 1.09936 1.29600 0.74871 1.18232 0.99719 0.84877 0.98371 1.19990 1.00381 0.93557 1.01378 1.20772 0.99626 0.94532 0.97198 1.20610 0.98925 0.99963 0.97293 1.20266 0.97821 0.91709 0.98714 1.18997 0.99594 0.94110 0.96688 1.21232 1.00540 0.90648 0.86389 1.23013 0.92190 1.01725 1.06518 1.23346 0.96790 1.00916 1.05232 0.93435 0.88752 0.95331 0.93161 0.91594 0.91717 0.92138 0.76864 0.88374 0.88313 0.81388 0.86486 0.85951 0.86150 0.86337 0.89701 0.88531 0.90895 0.91335 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 11.50 55.49 0.64 -24.16 16 2 C 0.02 0.41 4.98 -17.44 -0.09 0.32 16 3 Si 0.90 21.03 29.60 -169.99 -5.03 16.00 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.82 8.47 -15.06 -0.13 -6.95 16 8 H 0.06 1.63 6.75 -52.48 -0.35 1.27 16 9 N -0.55 -13.19 2.75 -165.66 -0.46 -13.65 16 10 C 0.15 3.43 5.33 -4.04 -0.02 3.41 16 11 C -0.14 -2.59 5.65 -26.73 -0.15 -2.74 16 12 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16 13 N -0.73 -9.81 5.56 -60.29 -0.33 -10.15 16 14 C 0.51 7.20 7.82 -10.98 -0.09 7.12 16 15 O -0.53 -10.07 16.03 5.56 0.09 -9.98 16 16 C -0.07 -0.67 6.23 -29.04 -0.18 -0.85 16 17 C -0.15 -1.76 4.81 -102.71 -0.49 -2.25 16 18 C 0.06 0.62 11.73 -16.73 -0.20 0.42 16 19 N -0.60 -5.54 6.07 -10.65 -0.06 -5.60 16 20 H 0.41 2.47 8.96 -40.82 -0.37 2.11 16 21 C 0.09 1.09 7.28 -83.99 -0.61 0.48 16 22 C -0.13 -1.31 10.08 -39.43 -0.40 -1.71 16 23 C -0.10 -0.97 10.01 -39.54 -0.40 -1.37 16 24 C -0.15 -1.53 9.97 -39.94 -0.40 -1.93 16 25 C -0.07 -0.79 10.05 -39.65 -0.40 -1.19 16 26 C -0.09 -1.14 6.35 -105.14 -0.67 -1.81 16 27 C 0.12 2.56 6.56 -67.92 -0.45 2.11 16 28 C -0.20 -3.86 9.80 -26.72 -0.26 -4.12 16 29 C -0.22 -4.57 10.36 -26.73 -0.28 -4.84 16 30 H 0.26 6.99 8.32 -40.82 -0.34 6.66 16 31 H 0.09 2.40 5.59 -51.93 -0.29 2.11 16 32 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.40 4.21 8.47 -40.82 -0.35 3.86 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 45 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 46 H 0.10 2.07 6.46 -51.93 -0.34 1.74 16 47 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 48 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 LS Contribution 408.33 15.07 6.15 6.15 Total: -1.00 -33.45 408.33 -11.81 -45.27 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -7.59 Total: 10.05 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -5.22 Total: -13.92 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.22 Total: -53.56 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.45 -11.81 -45.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690013928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.130 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds