Wall clock time and date at job start Wed Apr 1 2020 00:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46860 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99608 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.52997 * 110.03196 * 119.28084 * 14 13 12 17 17 N 1.46495 * 109.47257 * 67.83445 * 16 14 13 18 18 C 1.34778 * 120.00207 * 179.97438 * 17 16 14 19 19 O 1.21281 * 119.99885 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99872 * 180.02562 * 18 17 16 21 21 N 1.46505 * 109.47092 * 180.02562 * 20 18 17 22 22 C 1.36830 * 125.06271 * 264.69948 * 21 20 18 23 23 C 1.34241 * 109.92820 * 179.81220 * 22 21 20 24 24 C 1.46488 * 106.99562 * 0.43369 * 23 22 21 25 25 C 1.39635 * 134.02991 * 179.75608 * 24 23 22 26 26 C 1.36625 * 119.76533 * 179.97438 * 25 24 23 27 27 C 1.38835 * 120.52359 * 0.02562 * 26 25 24 28 28 C 1.37737 * 120.66964 * 359.97438 * 27 26 25 29 29 C 1.37682 * 125.06133 * 85.00051 * 21 20 18 30 30 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 31 31 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 32 32 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 33 33 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 34 34 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 35 35 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 36 36 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 37 37 H 1.09003 * 109.46907 * 187.83566 * 16 14 13 38 38 H 1.08999 * 109.47243 * 307.83162 * 16 14 13 39 39 H 0.97004 * 119.99936 * 0.02562 * 17 16 14 40 40 H 1.08999 * 109.47802 * 300.00200 * 20 18 17 41 41 H 1.08999 * 109.47403 * 60.00515 * 20 18 17 42 42 H 1.07994 * 125.03606 * 359.97438 * 22 21 20 43 43 H 1.07997 * 126.50201 * 180.18197 * 23 22 21 44 44 H 1.08002 * 120.11472 * 0.02562 * 25 24 23 45 45 H 1.07993 * 119.73323 * 180.02562 * 26 25 24 46 46 H 1.07997 * 119.65968 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.11391 * 180.02562 * 28 27 26 48 48 H 1.09002 * 110.48043 * 217.71140 * 30 14 13 49 49 H 1.09002 * 110.60152 * 95.12776 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0013 -3.5565 0.5374 12 6 2.2959 -4.1533 -1.4473 13 6 2.4851 -5.6771 -1.2983 14 6 1.7856 -6.0810 0.0114 15 1 2.5077 -6.5179 0.7011 16 6 0.6658 -7.0821 -0.2796 17 7 1.2478 -8.3462 -0.7373 18 6 0.4455 -9.3819 -1.0540 19 8 -0.7582 -9.2672 -0.9604 20 6 1.0442 -10.6824 -1.5242 21 7 -0.0279 -11.6411 -1.8030 22 6 -0.4856 -12.5858 -0.9254 23 6 -1.4736 -13.2963 -1.4920 24 6 -1.6569 -12.7700 -2.8467 25 6 -2.5097 -13.0900 -3.9051 26 6 -2.4306 -12.3896 -5.0755 27 6 -1.5084 -11.3621 -5.2214 28 6 -0.6577 -11.0298 -4.1903 29 6 -0.7211 -11.7294 -2.9894 30 6 1.1963 -4.7884 0.6130 31 1 -0.4849 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 1.4299 -3.9357 -2.0723 34 1 3.1933 -3.6965 -1.8646 35 1 3.5467 -5.9180 -1.2443 36 1 2.0274 -6.1950 -2.1411 37 1 0.0885 -7.2556 0.6285 38 1 0.0124 -6.6813 -1.0545 39 1 2.2106 -8.4381 -0.8118 40 1 1.6216 -10.5094 -2.4324 41 1 1.6976 -11.0829 -0.7491 42 1 -0.1097 -12.7357 0.0759 43 1 -2.0254 -14.1055 -1.0371 44 1 -3.2299 -13.8878 -3.7985 45 1 -3.0907 -12.6372 -5.8935 46 1 -1.4576 -10.8178 -6.1528 47 1 0.0560 -10.2286 -4.3135 48 1 1.2908 -4.7954 1.6988 49 1 0.1521 -4.6715 0.3227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691951833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:41 Heat of formation + Delta-G solvation = 30.564572 kcal Electronic energy + Delta-G solvation = -28252.409110 eV Core-core repulsion = 24372.655239 eV Total energy + Delta-G solvation = -3879.753871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64184 -39.85411 -38.21532 -37.13844 -35.04199 -33.52025 -33.16113 -31.03423 -30.55681 -29.24028 -29.01513 -27.73015 -26.73732 -24.28622 -23.09973 -22.87812 -21.81870 -21.19503 -20.39952 -19.74436 -19.45140 -17.73502 -17.50113 -17.12980 -16.74183 -16.09740 -15.78298 -15.58891 -15.15699 -15.06609 -14.62211 -14.18195 -14.05962 -13.89398 -13.59715 -13.52134 -13.30958 -13.04155 -12.86480 -12.79624 -12.42891 -12.20259 -11.89068 -11.81394 -11.77866 -11.22274 -11.04483 -10.93059 -10.82774 -10.66259 -10.62142 -10.34368 -10.28055 -10.15241 -9.89984 -9.77910 -9.68300 -9.28740 -8.91081 -8.35113 -7.86804 -6.97196 -5.78950 -3.07758 0.95838 1.45036 2.24535 2.26776 2.55333 3.02511 3.41209 3.46614 3.49112 3.77298 4.25984 4.31523 4.45951 4.55482 4.56246 4.56959 4.74251 4.83314 4.85656 4.94927 4.99206 5.24010 5.28216 5.44607 5.46133 5.48346 5.60255 5.62512 5.66165 5.74151 5.83087 5.87909 5.90326 5.94639 5.98095 6.13958 6.26081 6.28527 6.29191 6.40393 6.44062 6.51962 6.56901 6.58095 6.65663 6.82699 6.95903 7.02556 7.06196 7.20901 7.68426 7.89798 8.39797 9.50712 10.09345 10.43217 11.43705 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021709 B = 0.001757 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.484899 B =15936.584003 C =16476.763727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.056 0.944 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.074 0.926 16 C 0.127 3.873 17 N -0.724 5.724 18 C 0.487 3.513 19 O -0.518 6.518 20 C 0.092 3.908 21 N -0.469 5.469 22 C 0.058 3.942 23 C -0.202 4.202 24 C -0.108 4.108 25 C -0.073 4.073 26 C -0.148 4.148 27 C -0.100 4.100 28 C -0.125 4.125 29 C 0.109 3.891 30 C -0.123 4.123 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.401 0.599 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.167 0.833 43 H 0.147 0.853 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.115 0.885 48 H 0.064 0.936 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.112 -29.928 -5.089 30.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.066 3.934 11 H 0.074 0.926 12 C -0.185 4.185 13 C -0.158 4.158 14 C -0.119 4.119 15 H 0.092 0.908 16 C 0.004 3.996 17 N -0.376 5.376 18 C 0.270 3.730 19 O -0.393 6.393 20 C -0.035 4.035 21 N -0.153 5.153 22 C -0.066 4.066 23 C -0.227 4.227 24 C -0.113 4.113 25 C -0.091 4.091 26 C -0.168 4.168 27 C -0.120 4.120 28 C -0.146 4.146 29 C 0.004 3.996 30 C -0.163 4.163 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.235 0.765 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.184 0.816 43 H 0.164 0.836 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.133 0.867 48 H 0.083 0.917 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.589 -29.460 -4.896 29.976 hybrid contribution 0.670 1.089 0.020 1.279 sum 3.259 -28.371 -4.876 28.971 Atomic orbital electron populations 1.69670 1.05111 1.25584 1.57654 1.24765 0.95528 0.97751 1.03015 0.86128 0.78754 0.84165 0.77196 1.20570 1.21879 1.21867 1.19303 0.91019 0.84153 1.42652 0.91124 1.42398 1.05782 0.99790 1.88044 1.21150 0.94305 0.85622 0.92274 0.92621 1.23081 1.01391 0.92697 1.01353 1.22210 0.99326 0.98160 0.96118 1.21960 0.96420 0.95604 0.97940 0.90795 1.21599 0.96070 0.81971 0.99941 1.46036 1.10180 1.13318 1.68112 1.20936 0.87857 0.85602 0.78579 1.90806 1.14315 1.82644 1.51503 1.21579 0.89412 0.88042 1.04442 1.43332 1.31701 1.28802 1.11426 1.21755 0.98052 0.91370 0.95397 1.21645 1.02274 1.04817 0.93990 1.19200 0.98536 0.98312 0.95233 1.20256 0.97638 0.99335 0.91894 1.20617 1.00445 0.97777 0.97916 1.20795 0.95482 0.97596 0.98077 1.20006 1.02367 1.00814 0.91384 1.18183 0.95245 0.98539 0.87655 1.22614 1.00542 0.93309 0.99795 0.93524 0.78184 0.91846 0.92534 0.92407 0.92472 0.91459 0.91060 0.76531 0.86749 0.86215 0.81617 0.83567 0.86174 0.86141 0.85836 0.86709 0.91737 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.60 9.96 -15.06 -0.15 -6.75 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.80 5.23 -51.51 -0.27 -18.07 16 10 C 0.18 3.36 3.56 -65.95 -0.23 3.13 16 11 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 12 C -0.14 -2.42 6.51 -25.07 -0.16 -2.58 16 13 C -0.12 -1.45 6.19 -25.61 -0.16 -1.60 16 14 C -0.10 -1.15 2.96 -89.50 -0.27 -1.42 16 15 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 16 C 0.13 1.47 4.69 -4.05 -0.02 1.45 16 17 N -0.72 -6.35 5.34 -60.30 -0.32 -6.67 16 18 C 0.49 5.12 7.90 -10.99 -0.09 5.03 16 19 O -0.52 -8.22 16.42 5.56 0.09 -8.13 16 20 C 0.09 0.63 6.48 -5.19 -0.03 0.60 16 21 N -0.47 -4.68 2.27 -115.71 -0.26 -4.94 16 22 C 0.06 0.53 11.27 -16.73 -0.19 0.34 16 23 C -0.20 -2.00 11.08 -37.67 -0.42 -2.41 16 24 C -0.11 -1.26 6.37 -105.14 -0.67 -1.93 16 25 C -0.07 -0.74 10.05 -39.64 -0.40 -1.14 16 26 C -0.15 -1.41 9.97 -39.94 -0.40 -1.81 16 27 C -0.10 -0.99 10.01 -39.54 -0.40 -1.39 16 28 C -0.13 -1.37 10.00 -39.43 -0.39 -1.76 16 29 C 0.11 1.28 6.80 -83.99 -0.57 0.71 16 30 C -0.12 -1.90 5.98 -25.09 -0.15 -2.05 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.38 10.16 7.76 -40.82 -0.32 9.85 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.66 7.61 -51.93 -0.40 0.26 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.40 2.24 8.35 -40.82 -0.34 1.90 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.12 0.41 8.12 -51.93 -0.42 -0.01 16 42 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 43 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.07 1.15 7.73 -51.93 -0.40 0.75 16 LS Contribution 405.77 15.07 6.11 6.11 Total: -1.00 -35.62 405.77 -11.50 -47.12 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.76 Total: 8.86 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -4.79 Total: -14.10 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.13 Total: -57.12 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.62 -11.50 -47.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691951833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.680 kcal (2) G-P(sol) polarization free energy of solvation -35.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds