Wall clock time and date at job start Wed Apr 1 2020 00:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86807 * 119.99747 * 2 1 4 4 H 1.48506 * 109.46884 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47259 * 299.99495 * 3 2 1 6 6 H 1.48500 * 109.47367 * 60.00042 * 3 2 1 7 7 C 1.38949 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00234 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99448 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99392 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00620 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99532 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46769 * 179.97438 * 12 10 9 14 14 C 1.46904 * 111.00001 * 174.51352 * 13 12 10 15 15 C 1.52996 * 112.84888 * 60.66744 * 14 13 12 16 16 N 1.46505 * 109.47366 * 50.18158 * 15 14 13 17 17 C 1.34770 * 120.00068 * 185.47224 * 16 15 14 18 18 O 1.21286 * 120.00380 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99997 * 179.97438 * 17 16 15 20 20 F 1.39902 * 110.01442 * 58.60987 * 19 17 16 21 21 C 1.54269 * 110.03457 * 297.16853 * 19 17 16 22 22 C 1.54885 * 104.19693 * 217.10385 * 21 19 17 23 23 C 1.54885 * 102.74782 * 37.94123 * 22 21 19 24 24 C 1.53871 * 110.03731 * 180.02562 * 19 17 16 25 25 C 1.53774 * 113.69129 * 191.93794 * 14 13 12 26 26 C 1.53779 * 87.08373 * 89.12651 * 25 14 13 27 27 C 1.53783 * 113.61098 * 289.47571 * 14 13 12 28 28 H 0.97002 * 120.00196 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00778 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.47009 * 60.00428 * 12 10 9 31 31 H 1.08995 * 109.47544 * 299.99742 * 12 10 9 32 32 H 1.00906 * 111.00281 * 298.46267 * 13 12 10 33 33 H 1.09001 * 109.47113 * 170.18626 * 15 14 13 34 34 H 1.09003 * 109.47177 * 290.18174 * 15 14 13 35 35 H 0.96994 * 119.99501 * 5.47830 * 16 15 14 36 36 H 1.08999 * 110.48306 * 335.78446 * 21 19 17 37 37 H 1.09008 * 110.48165 * 98.42340 * 21 19 17 38 38 H 1.09005 * 110.75612 * 279.62316 * 22 21 19 39 39 H 1.09001 * 110.75768 * 156.25995 * 22 21 19 40 40 H 1.09002 * 110.48287 * 203.37970 * 23 22 21 41 41 H 1.09002 * 110.48553 * 80.73909 * 23 22 21 42 42 H 1.09006 * 110.03466 * 238.57490 * 24 19 17 43 43 H 1.09002 * 110.02876 * 359.97438 * 24 19 17 44 44 H 1.09007 * 113.61601 * 203.67266 * 25 14 13 45 45 H 1.08999 * 113.62021 * 334.57891 * 25 14 13 46 46 H 1.09000 * 113.61606 * 270.88311 * 26 25 14 47 47 H 1.08997 * 113.61994 * 139.98000 * 26 25 14 48 48 H 1.09000 * 113.61742 * 25.34589 * 27 14 13 49 49 H 1.09000 * 113.61320 * 156.25303 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0016 10 6 1.9973 -3.5577 0.0026 11 8 3.2102 -3.5578 0.0022 12 6 1.2438 -4.8629 0.0032 13 7 2.1984 -5.9794 0.0037 14 6 1.5029 -7.2666 0.1354 15 6 0.5260 -7.5342 -1.0113 16 7 1.2048 -7.3181 -2.2915 17 6 0.5087 -7.3879 -3.4434 18 8 -0.6797 -7.6291 -3.4203 19 6 1.2067 -7.1651 -4.7603 20 9 2.2424 -8.0926 -4.9162 21 6 1.7676 -5.7294 -4.8249 22 6 1.5593 -5.3062 -6.3001 23 6 0.1876 -5.9369 -6.6462 24 6 0.2021 -7.2963 -5.9184 25 6 2.4410 -8.4480 0.4338 26 6 2.2419 -8.1276 1.9247 27 6 0.8955 -7.4988 1.5290 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0016 30 1 0.6175 -4.9212 -0.8870 31 1 0.6168 -4.9201 0.8930 32 1 2.7747 -5.9629 -0.8244 33 1 0.1741 -8.5643 -0.9559 34 1 -0.3230 -6.8554 -0.9311 35 1 2.1551 -7.1249 -2.3100 36 1 1.2108 -5.0720 -4.1571 37 1 2.8279 -5.7224 -4.5720 38 1 2.3446 -5.7172 -6.9345 39 1 1.5186 -4.2205 -6.3885 40 1 0.0949 -6.0812 -7.7226 41 1 -0.6243 -5.3129 -6.2726 42 1 0.5216 -8.0825 -6.6025 43 1 -0.7903 -7.5217 -5.5279 44 1 2.0339 -9.4147 0.1369 45 1 3.4625 -8.2931 0.0866 46 1 2.9613 -7.4086 2.3166 47 1 2.1426 -9.0133 2.5522 48 1 0.6693 -6.5775 2.0658 49 1 0.0659 -8.2058 1.5314 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700132620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:49 Heat of formation + Delta-G solvation = -107.565799 kcal Electronic energy + Delta-G solvation = -31204.873617 eV Core-core repulsion = 26888.360739 eV Total energy + Delta-G solvation = -4316.512878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.10258 -40.49421 -39.40628 -38.00053 -37.07817 -34.82614 -34.08641 -33.07343 -31.22870 -29.68803 -29.08509 -27.71189 -26.64813 -25.69251 -24.11892 -22.96852 -21.77316 -21.11656 -20.07070 -19.27684 -18.83141 -18.32290 -17.91104 -16.80223 -16.29943 -16.14222 -15.78540 -15.46111 -15.22339 -15.03087 -14.78803 -14.54398 -14.37768 -14.19076 -14.06095 -13.75889 -13.60869 -13.42066 -13.16568 -12.75399 -12.37418 -12.30170 -12.21953 -11.79929 -11.62332 -11.60502 -11.47613 -11.44553 -11.39798 -11.14720 -11.08950 -10.87806 -10.81011 -10.59739 -10.36921 -10.26930 -10.21166 -9.88626 -9.54826 -9.32907 -8.56755 -8.14318 -7.99386 -6.44483 -3.85542 2.22929 2.74913 3.13970 3.24944 3.31738 3.85391 3.89121 3.94868 4.04772 4.21032 4.23068 4.38902 4.43108 4.61440 4.64692 4.84022 4.93088 4.99380 5.12077 5.12608 5.17723 5.22187 5.30581 5.33389 5.38118 5.52536 5.56708 5.60294 5.67271 5.69753 5.77483 5.79996 5.84633 5.88449 5.91562 5.93176 6.02296 6.05136 6.12532 6.20427 6.27155 6.39098 7.09336 7.14849 7.47520 7.52537 7.83998 8.03042 8.57779 9.14979 9.50981 10.02063 10.73167 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.008175 B = 0.003809 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.177016 B = 7348.727684 C = 9839.579916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.582 6.582 12 C 0.049 3.951 13 N -0.633 5.633 14 C 0.073 3.927 15 C 0.096 3.904 16 N -0.714 5.714 17 C 0.506 3.494 18 O -0.523 6.523 19 C 0.101 3.899 20 F -0.192 7.192 21 C -0.145 4.145 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.142 4.142 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.124 4.124 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.345 0.655 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.402 0.598 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.078 0.922 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.489 -16.504 -7.515 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.466 6.466 12 C -0.083 4.083 13 N -0.265 5.265 14 C -0.019 4.019 15 C -0.029 4.029 16 N -0.366 5.366 17 C 0.289 3.711 18 O -0.398 6.398 19 C 0.080 3.920 20 F -0.173 7.173 21 C -0.183 4.183 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.180 4.180 25 C -0.165 4.165 26 C -0.163 4.163 27 C -0.162 4.162 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.166 0.834 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.238 0.762 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.120 0.880 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.109 0.891 47 H 0.080 0.920 48 H 0.096 0.904 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.487 -16.475 -6.804 17.831 hybrid contribution -0.164 0.840 -0.854 1.209 sum -0.651 -15.634 -7.658 17.421 Atomic orbital electron populations 1.69618 1.05949 1.28088 1.50536 1.25257 0.95609 0.99711 0.97292 0.85819 0.79723 0.81182 0.77738 1.19207 1.20766 1.20717 1.19739 0.93363 0.82178 1.47584 0.87869 1.41867 1.09183 1.04608 1.64307 1.19749 0.88362 0.84593 0.84637 1.90527 1.13647 1.87048 1.55356 1.21681 0.94396 0.90827 1.01416 1.60058 1.21465 0.98872 1.46088 1.22465 0.94400 0.91258 0.93813 1.22141 0.96557 1.02031 0.82211 1.45899 1.13086 1.71685 1.05946 1.20695 0.87744 0.76959 0.85682 1.90699 1.14919 1.47310 1.86898 1.21849 0.86221 0.89536 0.94408 1.92910 1.60041 1.67758 1.96569 1.23030 1.02929 0.92695 0.99622 1.22513 0.97400 1.01505 0.94612 1.22358 0.97914 0.95337 1.00430 1.22736 1.00574 0.99516 0.95162 1.22989 0.99866 0.96222 0.97412 1.22660 0.97601 1.00382 0.95632 1.22938 0.97389 1.01587 0.94321 0.91897 0.77522 0.93811 0.89373 0.83428 0.90929 0.90669 0.76225 0.89123 0.89078 0.90783 0.90198 0.90734 0.90790 0.89840 0.87969 0.89915 0.90773 0.89110 0.91957 0.90383 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 10 C 0.44 10.03 7.83 -10.98 -0.09 9.95 16 11 O -0.58 -15.19 15.90 5.55 0.09 -15.10 16 12 C 0.05 0.83 5.64 -4.97 -0.03 0.80 16 13 N -0.63 -9.21 5.69 -100.39 -0.57 -9.78 16 14 C 0.07 0.83 0.66 -130.79 -0.09 0.74 16 15 C 0.10 1.11 4.49 -4.04 -0.02 1.09 16 16 N -0.71 -8.31 5.31 -60.29 -0.32 -8.63 16 17 C 0.51 6.65 6.73 -10.99 -0.07 6.57 16 18 O -0.52 -8.29 15.20 5.55 0.08 -8.20 16 19 C 0.10 1.16 1.48 -90.66 -0.13 1.02 16 20 F -0.19 -2.29 16.79 2.25 0.04 -2.26 16 21 C -0.14 -1.55 6.10 -25.07 -0.15 -1.70 16 22 C -0.12 -1.14 6.91 -24.74 -0.17 -1.31 16 23 C -0.12 -1.11 6.83 -25.10 -0.17 -1.29 16 24 C -0.14 -1.48 6.25 -25.65 -0.16 -1.64 16 25 C -0.13 -1.26 7.44 -25.92 -0.19 -1.45 16 26 C -0.13 -1.29 8.00 -25.92 -0.21 -1.49 16 27 C -0.12 -1.32 7.16 -25.91 -0.19 -1.51 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 30 H 0.04 0.70 7.14 -51.93 -0.37 0.33 16 31 H 0.09 1.40 6.79 -51.93 -0.35 1.05 16 32 H 0.35 5.06 7.31 -39.29 -0.29 4.78 16 33 H 0.07 0.80 7.97 -51.93 -0.41 0.39 16 34 H 0.08 0.97 7.39 -51.93 -0.38 0.59 16 35 H 0.40 4.29 7.24 -40.82 -0.30 3.99 16 36 H 0.09 1.08 7.85 -51.93 -0.41 0.67 16 37 H 0.09 0.92 8.11 -51.92 -0.42 0.50 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.78 8.02 -51.93 -0.42 0.37 16 43 H 0.10 1.20 6.39 -51.93 -0.33 0.87 16 44 H 0.08 0.71 7.98 -51.93 -0.41 0.30 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.94 6.97 -51.93 -0.36 0.57 16 49 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -31.37 396.41 -8.64 -40.01 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -7.67 Total: 17.81 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.91 Total: 1.97 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.22 Total: -55.95 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.17 Total: -23.31 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.37 -8.64 -40.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700132620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.556 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds