Wall clock time and date at job start Wed Apr 1 2020 00:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99895 * 2 1 4 4 H 1.48497 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47355 * 300.00241 * 3 2 1 6 6 H 1.48503 * 109.46902 * 60.00207 * 3 2 1 7 7 C 1.38814 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99813 * 189.04099 * 7 2 1 9 9 N 1.36938 * 119.99881 * 9.03593 * 7 2 1 10 10 C 1.48143 * 127.83749 * 15.59389 * 9 7 2 11 11 C 1.54387 * 104.61876 * 140.39254 * 10 9 7 12 12 H 1.09006 * 118.18259 * 244.20232 * 11 10 9 13 13 C 1.53000 * 118.12385 * 87.18863 * 11 10 9 14 14 H 1.09002 * 117.44446 * 16.06303 * 13 11 10 15 15 C 1.53002 * 117.44096 * 160.80990 * 13 11 10 16 16 N 1.46500 * 109.46773 * 184.99556 * 15 13 11 17 17 C 1.34785 * 119.99711 * 179.97438 * 16 15 13 18 18 O 1.21277 * 119.99889 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99918 * 180.02562 * 17 16 15 20 20 N 1.46899 * 109.47016 * 185.49673 * 19 17 16 21 21 C 1.47912 * 111.00218 * 75.90327 * 20 19 17 22 22 C 1.54594 * 102.62475 * 94.47724 * 21 20 19 23 23 C 1.51574 * 102.83711 * 25.52466 * 22 21 20 24 24 C 1.37925 * 131.56054 * 163.80316 * 23 22 21 25 25 C 1.38302 * 120.08204 * 180.64481 * 24 23 22 26 26 C 1.38308 * 119.88242 * 359.97438 * 25 24 23 27 27 C 1.37901 * 120.26437 * 359.83932 * 26 25 24 28 28 C 1.38960 * 107.95840 * 344.10735 * 23 22 21 29 29 C 1.52999 * 60.55580 * 268.45686 * 13 11 10 30 30 H 1.09001 * 119.54121 * 248.22791 * 29 13 11 31 31 C 1.48148 * 127.83800 * 195.56421 * 9 7 2 32 32 H 0.96992 * 119.99975 * 359.97438 * 1 2 3 33 33 H 1.09001 * 110.41350 * 21.60334 * 10 9 7 34 34 H 1.09006 * 110.40554 * 259.17388 * 10 9 7 35 35 H 1.09004 * 109.46758 * 65.00260 * 15 13 11 36 36 H 1.08989 * 109.47358 * 305.00000 * 15 13 11 37 37 H 0.96998 * 120.00725 * 0.02562 * 16 15 13 38 38 H 1.08998 * 109.47479 * 65.49054 * 19 17 16 39 39 H 1.09004 * 109.46946 * 305.49363 * 19 17 16 40 40 H 1.08998 * 110.77894 * 212.75970 * 21 20 19 41 41 H 1.08999 * 110.77841 * 336.01111 * 21 20 19 42 42 H 1.09001 * 110.74056 * 143.84112 * 22 21 20 43 43 H 1.08998 * 110.74294 * 266.99206 * 22 21 20 44 44 H 1.07994 * 119.95949 * 0.93171 * 24 23 22 45 45 H 1.07996 * 120.05771 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.86842 * 179.82458 * 26 25 24 47 47 H 1.07998 * 119.90496 * 180.02562 * 27 26 25 48 48 H 1.09003 * 110.40667 * 100.82247 * 31 9 7 49 49 H 1.09001 * 110.50704 * 338.44241 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0803 -1.2080 0.1464 9 7 1.3384 -2.3806 -0.1873 10 6 -0.0346 -2.5709 -0.7101 11 6 0.0628 -3.8166 -1.6168 12 1 -0.1250 -3.6930 -2.6834 13 6 -0.1188 -5.1929 -0.9734 14 1 -0.5672 -5.2280 0.0195 15 6 -0.4685 -6.3620 -1.8963 16 7 -0.7179 -7.5610 -1.0923 17 6 -1.0458 -8.7208 -1.6957 18 8 -1.1339 -8.7718 -2.9042 19 6 -1.3029 -9.9541 -0.8687 20 7 -1.5095 -11.1053 -1.7574 21 6 -0.2256 -11.5783 -2.3194 22 6 0.1787 -12.7028 -1.3386 23 6 -1.1541 -13.1522 -0.7736 24 6 -1.5187 -14.2894 -0.0836 25 6 -2.8306 -14.4666 0.3169 26 6 -3.7766 -13.5009 0.0247 27 6 -3.4164 -12.3603 -0.6616 28 6 -2.0958 -12.1734 -1.0670 29 6 1.2855 -4.5971 -1.0913 30 1 2.0086 -5.0549 -1.7663 31 6 1.8198 -3.7546 0.0870 32 1 -0.4850 0.8400 0.0004 33 1 -0.3443 -1.7017 -1.2904 34 1 -0.7316 -2.7502 0.1086 35 1 0.3618 -6.5478 -2.5778 36 1 -1.3620 -6.1172 -2.4704 37 1 -0.6477 -7.5202 -0.1257 38 1 -2.1925 -9.8027 -0.2573 39 1 -0.4458 -10.1432 -0.2223 40 1 -0.3662 -11.9744 -3.3250 41 1 0.5143 -10.7779 -2.3205 42 1 0.6682 -13.5198 -1.8687 43 1 0.8240 -12.3143 -0.5507 44 1 -0.7780 -15.0403 0.1483 45 1 -3.1156 -15.3570 0.8575 46 1 -4.8016 -13.6408 0.3350 47 1 -4.1598 -11.6098 -0.8863 48 1 1.4125 -4.1188 1.0302 49 1 2.9093 -3.7802 0.1093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700598821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:51 Heat of formation + Delta-G solvation = 72.791222 kcal Electronic energy + Delta-G solvation = -28195.245229 eV Core-core repulsion = 24317.322443 eV Total energy + Delta-G solvation = -3877.922786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.29074 -39.62312 -38.70548 -36.97818 -34.94522 -33.36506 -32.79408 -31.00946 -30.40971 -29.27847 -28.05285 -27.15579 -26.34384 -24.61742 -23.41340 -21.69272 -21.56629 -21.14070 -20.63348 -19.71653 -19.26725 -17.33960 -17.19210 -16.81542 -16.57880 -16.01475 -15.61990 -15.55093 -15.15270 -14.78471 -14.36582 -14.28109 -13.98512 -13.72107 -13.61818 -13.38145 -13.11325 -12.94697 -12.80293 -12.69934 -12.63504 -12.19538 -11.90760 -11.85139 -11.57366 -11.28697 -11.23648 -11.11745 -10.86260 -10.67078 -10.34019 -10.24984 -10.12475 -9.77669 -9.66694 -9.40887 -9.17423 -9.13770 -8.95749 -8.66292 -8.25122 -6.89080 -5.82204 -3.16576 0.91718 1.01806 2.54717 2.82275 3.34890 3.36284 3.42309 3.44732 3.45027 4.10671 4.19830 4.36013 4.44188 4.55745 4.59098 4.70220 4.72611 4.81920 4.89156 4.91513 5.05791 5.09220 5.22912 5.27627 5.34556 5.36958 5.42663 5.46518 5.48872 5.55795 5.73460 5.77495 5.87638 5.89776 5.94663 5.98322 6.05482 6.15084 6.20749 6.33140 6.35550 6.47859 6.53836 6.63740 6.68587 6.89107 6.89360 7.33354 7.44178 7.51198 7.69894 8.16333 8.18676 9.08786 9.71543 10.48406 11.32172 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030610 B = 0.001629 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.507935 B =17179.302569 C =17309.662264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.184 3.816 11 C -0.161 4.161 12 H 0.103 0.897 13 C -0.150 4.150 14 H 0.103 0.897 15 C 0.157 3.843 16 N -0.726 5.726 17 C 0.509 3.491 18 O -0.522 6.522 19 C 0.039 3.961 20 N -0.473 5.473 21 C 0.058 3.942 22 C -0.114 4.114 23 C -0.138 4.138 24 C -0.090 4.090 25 C -0.132 4.132 26 C -0.104 4.104 27 C -0.110 4.110 28 C 0.090 3.910 29 C -0.172 4.172 30 H 0.102 0.898 31 C 0.154 3.846 32 H 0.254 0.746 33 H 0.090 0.910 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.401 0.599 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.125 0.875 48 H 0.023 0.977 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.290 -29.121 0.662 29.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.182 4.182 12 H 0.121 0.879 13 C -0.169 4.169 14 H 0.121 0.879 15 C 0.033 3.967 16 N -0.379 5.379 17 C 0.294 3.706 18 O -0.397 6.397 19 C -0.090 4.090 20 N -0.190 5.190 21 C -0.068 4.068 22 C -0.152 4.152 23 C -0.140 4.140 24 C -0.109 4.109 25 C -0.151 4.151 26 C -0.123 4.123 27 C -0.130 4.130 28 C -0.006 4.006 29 C -0.192 4.192 30 H 0.120 0.880 31 C 0.028 3.972 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.235 0.765 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.138 0.862 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.143 0.857 48 H 0.041 0.959 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.658 -28.597 -0.637 28.981 hybrid contribution 0.891 0.607 1.018 1.482 sum -3.768 -27.990 0.380 28.245 Atomic orbital electron populations 1.69904 1.05067 1.25342 1.55861 1.24903 0.95653 0.98000 1.01760 0.86041 0.78878 0.83508 0.77295 1.20360 1.21585 1.21689 1.19045 0.90828 0.82369 1.43272 0.90528 1.45214 1.13300 0.99996 1.73290 1.21067 0.86814 0.92766 0.93564 1.24238 1.02102 0.91720 1.00120 0.87879 1.22529 1.00294 0.93815 1.00237 0.87950 1.20853 1.01049 0.82097 0.92655 1.46031 1.71188 1.09774 1.10885 1.20391 0.77140 0.84232 0.88852 1.90724 1.49973 1.84864 1.14105 1.22090 1.03459 0.89369 0.94065 1.59663 1.23507 1.04532 1.31276 1.23144 0.88663 0.96365 0.98660 1.21755 0.94714 0.99546 0.99203 1.21035 0.95562 0.97076 1.00356 1.20413 0.96372 0.96262 0.97818 1.21077 0.93033 0.99600 1.01351 1.20954 0.99690 0.93474 0.98177 1.20559 0.93716 0.98747 0.99936 1.19550 0.93871 0.92066 0.95079 1.23995 0.89817 1.02657 1.02695 0.87965 1.21133 0.97114 0.86036 0.92935 0.93584 0.89156 0.95874 0.91496 0.91121 0.76488 0.87525 0.90959 0.88892 0.89612 0.89382 0.89998 0.86171 0.85737 0.85499 0.85664 0.95896 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 10.86 55.49 0.60 -26.03 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 3 Si 0.91 21.81 29.56 -169.99 -5.03 16.78 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.23 -6.28 10.35 -15.06 -0.16 -6.44 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.59 -15.06 3.38 -168.85 -0.57 -15.63 16 10 C 0.18 4.34 5.70 -2.41 -0.01 4.33 16 11 C -0.16 -2.99 6.85 -89.22 -0.61 -3.60 16 12 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 13 C -0.15 -2.21 5.39 -90.62 -0.49 -2.70 16 14 H 0.10 1.50 8.04 -51.93 -0.42 1.08 16 15 C 0.16 2.05 5.95 -4.04 -0.02 2.03 16 16 N -0.73 -7.87 5.56 -60.29 -0.33 -8.21 16 17 C 0.51 6.07 7.30 -10.98 -0.08 5.99 16 18 O -0.52 -8.35 15.96 5.56 0.09 -8.27 16 19 C 0.04 0.36 5.23 -4.98 -0.03 0.33 16 20 N -0.47 -4.97 4.59 -170.38 -0.78 -5.75 16 21 C 0.06 0.53 6.36 -2.43 -0.02 0.52 16 22 C -0.11 -0.83 6.92 -26.62 -0.18 -1.01 16 23 C -0.14 -1.19 6.23 -104.04 -0.65 -1.84 16 24 C -0.09 -0.67 10.03 -39.67 -0.40 -1.07 16 25 C -0.13 -0.90 10.06 -39.53 -0.40 -1.29 16 26 C -0.10 -0.74 10.02 -39.68 -0.40 -1.14 16 27 C -0.11 -0.95 10.05 -39.27 -0.39 -1.35 16 28 C 0.09 0.88 5.49 -83.40 -0.46 0.42 16 29 C -0.17 -2.94 6.74 -89.22 -0.60 -3.55 16 30 H 0.10 1.63 8.12 -51.93 -0.42 1.21 16 31 C 0.15 3.15 7.04 -2.41 -0.02 3.13 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.09 2.40 6.51 -51.93 -0.34 2.07 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.92 7.94 -51.93 -0.41 0.51 16 36 H 0.07 0.99 8.14 -51.94 -0.42 0.57 16 37 H 0.40 3.38 8.40 -40.82 -0.34 3.03 16 38 H 0.11 0.84 7.96 -51.93 -0.41 0.42 16 39 H 0.07 0.53 7.94 -51.93 -0.41 0.12 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.79 7.30 -51.93 -0.38 0.41 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 47 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -33.15 398.09 -12.79 -45.93 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.76 Total: 2.68 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -5.01 Total: -7.50 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -1.09 Total: -55.63 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.15 -12.79 -45.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700598821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.725 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds