Wall clock time and date at job start Wed Apr 1 2020 00:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00270 * 2 1 4 4 H 1.48501 * 109.47088 * 85.52373 * 3 2 1 5 5 H 1.48492 * 109.47013 * 205.52603 * 3 2 1 6 6 H 1.48503 * 109.46806 * 325.52605 * 3 2 1 7 7 C 1.38818 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99251 * 17.15513 * 7 2 1 9 9 N 1.36930 * 120.00011 * 197.15105 * 7 2 1 10 10 C 1.46919 * 120.63527 * 29.88572 * 9 7 2 11 11 C 1.53197 * 108.77576 * 126.36392 * 10 9 7 12 12 C 1.53038 * 109.30767 * 54.64147 * 11 10 9 13 13 C 1.53043 * 109.54023 * 298.63173 * 12 11 10 14 14 C 1.46931 * 120.62718 * 209.60798 * 9 7 2 15 15 H 1.09002 * 109.58714 * 113.84556 * 14 9 7 16 16 C 1.52998 * 109.58512 * 353.41903 * 14 9 7 17 17 N 1.46503 * 109.47310 * 60.32753 * 16 14 9 18 18 C 1.34772 * 119.99870 * 179.97438 * 17 16 14 19 19 O 1.21286 * 120.00409 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.99842 * 179.97438 * 18 17 16 21 21 N 1.46495 * 109.47120 * 180.02562 * 20 18 17 22 22 C 1.36834 * 125.06053 * 265.02325 * 21 20 18 23 23 C 1.34245 * 109.93234 * 180.02562 * 22 21 20 24 24 C 1.46493 * 106.99412 * 0.02562 * 23 22 21 25 25 C 1.39629 * 134.03198 * 179.97438 * 24 23 22 26 26 C 1.36630 * 119.76152 * 180.02562 * 25 24 23 27 27 C 1.38836 * 120.52939 * 0.02562 * 26 25 24 28 28 C 1.37746 * 120.66844 * 0.02562 * 27 26 25 29 29 C 1.37681 * 125.06716 * 84.72335 * 21 20 18 30 30 H 0.97002 * 119.99689 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.59301 * 246.15888 * 10 9 7 32 32 H 1.09010 * 109.58462 * 6.43914 * 10 9 7 33 33 H 1.09005 * 109.49285 * 174.58736 * 11 10 9 34 34 H 1.08996 * 109.49986 * 294.68745 * 11 10 9 35 35 H 1.08998 * 109.46526 * 58.65594 * 12 11 10 36 36 H 1.09001 * 109.46145 * 178.62610 * 12 11 10 37 37 H 1.08997 * 109.50120 * 181.31924 * 13 12 11 38 38 H 1.09005 * 109.49278 * 301.38804 * 13 12 11 39 39 H 1.09001 * 109.46632 * 180.32831 * 16 14 9 40 40 H 1.08998 * 109.47448 * 300.32271 * 16 14 9 41 41 H 0.96996 * 119.99751 * 0.02562 * 17 16 14 42 42 H 1.09001 * 109.47469 * 300.00444 * 20 18 17 43 43 H 1.08999 * 109.46866 * 60.00679 * 20 18 17 44 44 H 1.07998 * 125.03904 * 359.97438 * 22 21 20 45 45 H 1.07994 * 126.50541 * 180.02562 * 23 22 21 46 46 H 1.07994 * 120.12112 * 0.03176 * 25 24 23 47 47 H 1.07999 * 119.73821 * 179.97438 * 26 25 24 48 48 H 1.07998 * 119.66427 * 179.97438 * 27 26 25 49 49 H 1.07991 * 120.11055 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4032 2.1010 1.3958 5 1 3.5918 1.4146 -0.6033 6 1 1.4982 2.6235 -0.7925 7 6 2.0103 -1.2022 0.0005 8 1 1.5062 -2.1167 -0.2749 9 7 3.3339 -1.2284 0.3502 10 6 3.8756 -0.2514 1.3045 11 6 4.5884 -1.0058 2.4314 12 6 5.6369 -1.9434 1.8284 13 6 4.9481 -2.9666 0.9225 14 6 4.2382 -2.2380 -0.2171 15 1 4.9778 -1.7505 -0.8522 16 6 3.4319 -3.2429 -1.0422 17 7 2.7486 -2.5428 -2.1328 18 6 1.9748 -3.2312 -2.9951 19 8 1.8436 -4.4302 -2.8681 20 6 1.2714 -2.5109 -4.1166 21 7 0.4995 -3.4731 -4.9067 22 6 0.9389 -4.0838 -6.0496 23 6 -0.0112 -4.9051 -6.5240 24 6 -1.1526 -4.8123 -5.6103 25 6 -2.4127 -5.4121 -5.5675 26 6 -3.2755 -5.1060 -4.5532 27 6 -2.9095 -4.2026 -3.5646 28 6 -1.6718 -3.5985 -3.5881 29 6 -0.7739 -3.9022 -4.6067 30 1 -0.4850 0.8401 0.0004 31 1 4.5850 0.4015 0.7960 32 1 3.0623 0.3447 1.7184 33 1 5.0770 -0.2920 3.0946 34 1 3.8608 -1.5887 2.9960 35 1 6.3501 -1.3626 1.2436 36 1 6.1625 -2.4635 2.6293 37 1 5.6927 -3.6486 0.5119 38 1 4.2175 -3.5315 1.5015 39 1 4.1037 -3.9942 -1.4574 40 1 2.6940 -3.7285 -0.4036 41 1 2.8537 -1.5839 -2.2346 42 1 0.5992 -1.7601 -3.7011 43 1 2.0090 -2.0247 -4.7551 44 1 1.9063 -3.9276 -6.5035 45 1 0.0535 -5.5179 -7.4108 46 1 -2.7044 -6.1155 -6.3333 47 1 -4.2502 -5.5698 -4.5207 48 1 -3.6026 -3.9705 -2.7695 49 1 -1.3966 -2.8969 -2.8147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713258721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:33 Heat of formation + Delta-G solvation = 56.192423 kcal Electronic energy + Delta-G solvation = -30326.309285 eV Core-core repulsion = 26447.666721 eV Total energy + Delta-G solvation = -3878.642564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.13429 -39.26844 -38.04698 -36.66239 -34.35815 -33.15227 -32.70247 -31.13733 -30.80933 -30.09228 -28.62882 -27.20231 -25.81457 -24.42626 -22.79046 -22.43460 -21.37646 -20.96763 -20.37888 -19.80553 -19.33929 -17.31107 -16.88985 -16.41357 -16.22066 -15.77342 -15.25516 -15.09417 -15.06501 -14.47000 -14.16345 -13.80902 -13.76970 -13.60449 -13.50845 -13.32403 -13.03073 -12.88037 -12.57403 -12.44978 -12.25123 -12.20465 -11.76750 -11.69762 -11.40464 -11.33649 -11.29433 -10.93997 -10.72988 -10.55244 -10.52117 -10.27759 -9.97372 -9.75406 -9.60743 -9.53136 -9.23418 -8.82277 -8.37772 -7.89187 -7.39211 -7.06193 -6.07083 -3.48321 1.42561 1.92102 2.79682 3.02027 3.04523 3.20493 3.34582 3.37212 3.79059 4.24272 4.38235 4.69907 4.87583 4.92222 4.99702 5.13540 5.16972 5.23859 5.27855 5.33451 5.34119 5.44577 5.45384 5.66899 5.67340 5.77454 5.80427 5.88284 5.90086 6.02674 6.06346 6.11398 6.13914 6.16013 6.30624 6.34516 6.36565 6.39873 6.49146 6.60050 6.66895 6.76472 6.89448 6.89789 7.01258 7.03449 7.05900 7.46962 7.51644 7.82630 8.07491 8.22843 8.70042 8.79416 9.57236 9.95754 11.06885 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014306 B = 0.003358 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.807923 B = 8335.722638 C = 9224.112612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.027 3.973 3 Si 0.879 3.121 4 H -0.290 1.290 5 H -0.269 1.269 6 H -0.305 1.305 7 C -0.264 4.264 8 H 0.094 0.906 9 N -0.604 5.604 10 C 0.126 3.874 11 C -0.137 4.137 12 C -0.108 4.108 13 C -0.130 4.130 14 C 0.165 3.835 15 H 0.037 0.963 16 C 0.137 3.863 17 N -0.690 5.690 18 C 0.492 3.508 19 O -0.543 6.543 20 C 0.089 3.911 21 N -0.463 5.463 22 C 0.060 3.940 23 C -0.211 4.211 24 C -0.111 4.111 25 C -0.080 4.080 26 C -0.150 4.150 27 C -0.104 4.104 28 C -0.116 4.116 29 C 0.113 3.887 30 H 0.263 0.737 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.411 0.589 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.163 0.837 45 H 0.143 0.857 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.123 0.877 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.414 -4.554 -8.104 10.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.710 3.290 4 H -0.217 1.217 5 H -0.194 1.194 6 H -0.233 1.233 7 C -0.393 4.393 8 H 0.111 0.889 9 N -0.330 5.330 10 C 0.001 3.999 11 C -0.176 4.176 12 C -0.146 4.146 13 C -0.169 4.169 14 C 0.059 3.941 15 H 0.054 0.946 16 C 0.013 3.987 17 N -0.342 5.342 18 C 0.276 3.724 19 O -0.421 6.421 20 C -0.037 4.037 21 N -0.145 5.145 22 C -0.065 4.065 23 C -0.236 4.236 24 C -0.115 4.115 25 C -0.099 4.099 26 C -0.169 4.169 27 C -0.124 4.124 28 C -0.136 4.136 29 C 0.007 3.993 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.248 0.752 42 H 0.139 0.861 43 H 0.132 0.868 44 H 0.181 0.819 45 H 0.161 0.839 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.141 0.859 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.369 -5.080 -7.865 10.332 hybrid contribution 0.586 1.625 0.339 1.760 sum 4.955 -3.456 -7.527 9.651 Atomic orbital electron populations 1.69810 1.05598 1.26530 1.52646 1.25311 0.95143 0.97353 0.99419 0.87016 0.79877 0.84883 0.77213 1.21729 1.19383 1.23329 1.19014 0.83391 0.94606 1.42255 0.88879 1.44404 1.06734 1.34240 1.47595 1.21374 0.96711 0.91933 0.89894 1.22016 0.98149 0.98759 0.98673 1.21363 0.97492 0.97318 0.98386 1.21872 0.99292 0.97781 0.97978 1.20640 0.91464 0.89640 0.92398 0.94587 1.21270 0.95415 0.94012 0.88020 1.45874 1.47740 1.12378 1.28204 1.20662 0.80043 0.88040 0.83702 1.90717 1.62690 1.14549 1.74151 1.21628 0.97233 0.91349 0.93474 1.43418 1.12025 1.37598 1.21469 1.21708 0.99466 0.96970 0.88378 1.21544 0.93632 1.05831 1.02621 1.19168 0.95372 1.00318 0.96668 1.20155 0.92078 0.99186 0.98454 1.20569 0.99755 1.00577 0.95976 1.20785 0.95631 0.97128 0.98825 1.20233 0.93244 1.02523 0.97588 1.18199 0.85569 0.98068 0.97460 0.92695 0.95615 0.91198 0.93013 0.91800 0.92736 0.93001 0.92493 0.91610 0.92424 0.91204 0.75200 0.86126 0.86820 0.81931 0.83941 0.86577 0.86502 0.85930 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.23 13.97 55.49 0.78 -24.46 16 2 C 0.03 0.70 5.28 -17.43 -0.09 0.61 16 3 Si 0.88 20.24 24.33 -169.99 -4.14 16.10 16 4 H -0.29 -6.71 6.74 56.52 0.38 -6.33 16 5 H -0.27 -5.92 6.31 56.52 0.36 -5.56 16 6 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.26 -6.39 7.50 -15.06 -0.11 -6.50 16 8 H 0.09 2.49 5.97 -52.49 -0.31 2.18 16 9 N -0.60 -12.52 2.74 -165.02 -0.45 -12.97 16 10 C 0.13 2.50 4.18 -3.71 -0.02 2.48 16 11 C -0.14 -2.25 6.08 -26.61 -0.16 -2.41 16 12 C -0.11 -1.54 5.89 -26.69 -0.16 -1.70 16 13 C -0.13 -1.95 5.35 -26.83 -0.14 -2.09 16 14 C 0.17 2.84 2.99 -67.82 -0.20 2.64 16 15 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 16 C 0.14 2.41 4.42 -4.04 -0.02 2.40 16 17 N -0.69 -12.10 3.82 -60.29 -0.23 -12.33 16 18 C 0.49 8.87 7.90 -10.99 -0.09 8.78 16 19 O -0.54 -11.82 16.42 5.55 0.09 -11.73 16 20 C 0.09 1.32 6.48 -5.20 -0.03 1.29 16 21 N -0.46 -7.42 2.27 -115.71 -0.26 -7.68 16 22 C 0.06 0.83 11.27 -16.73 -0.19 0.64 16 23 C -0.21 -2.97 11.08 -37.67 -0.42 -3.39 16 24 C -0.11 -1.80 6.37 -105.13 -0.67 -2.47 16 25 C -0.08 -1.16 10.05 -39.64 -0.40 -1.56 16 26 C -0.15 -2.10 9.97 -39.94 -0.40 -2.50 16 27 C -0.10 -1.62 10.01 -39.54 -0.40 -2.02 16 28 C -0.12 -2.05 10.00 -39.43 -0.39 -2.45 16 29 C 0.11 1.99 6.80 -83.98 -0.57 1.42 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.03 0.51 6.85 -51.93 -0.36 0.15 16 32 H 0.07 1.55 4.62 -51.92 -0.24 1.31 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.43 7.42 -51.93 -0.39 1.04 16 41 H 0.41 7.12 7.40 -40.82 -0.30 6.82 16 42 H 0.12 1.84 8.14 -51.93 -0.42 1.42 16 43 H 0.11 1.24 8.12 -51.93 -0.42 0.82 16 44 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 48 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 49 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -31.35 385.64 -10.42 -41.78 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -7.56 Total: 12.31 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -4.46 Total: -6.83 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.17 Total: -57.44 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.14 Total: 16.10 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.35 -10.42 -41.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713258721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.968 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds