Wall clock time and date at job start Wed Apr 1 2020 00:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00270 * 2 1 4 4 H 1.48501 * 109.47088 * 85.52373 * 3 2 1 5 5 H 1.48492 * 109.47013 * 205.52603 * 3 2 1 6 6 H 1.48503 * 109.46806 * 325.52605 * 3 2 1 7 7 C 1.38818 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99251 * 17.15513 * 7 2 1 9 9 N 1.36930 * 120.00011 * 197.15105 * 7 2 1 10 10 C 1.46919 * 120.63527 * 29.88572 * 9 7 2 11 11 C 1.53197 * 108.77576 * 126.36392 * 10 9 7 12 12 C 1.53038 * 109.30767 * 54.64147 * 11 10 9 13 13 C 1.53043 * 109.54023 * 298.63173 * 12 11 10 14 14 C 1.46931 * 120.62718 * 209.60798 * 9 7 2 15 15 H 1.09002 * 109.58714 * 113.84556 * 14 9 7 16 16 C 1.52998 * 109.58512 * 353.41903 * 14 9 7 17 17 N 1.46503 * 109.47310 * 60.32753 * 16 14 9 18 18 C 1.34772 * 119.99870 * 179.97438 * 17 16 14 19 19 O 1.21286 * 120.00409 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.99842 * 179.97438 * 18 17 16 21 21 N 1.46495 * 109.47120 * 180.02562 * 20 18 17 22 22 C 1.36834 * 125.06053 * 265.02325 * 21 20 18 23 23 C 1.34245 * 109.93234 * 180.02562 * 22 21 20 24 24 C 1.46493 * 106.99412 * 0.02562 * 23 22 21 25 25 C 1.39629 * 134.03198 * 179.97438 * 24 23 22 26 26 C 1.36630 * 119.76152 * 180.02562 * 25 24 23 27 27 C 1.38836 * 120.52939 * 0.02562 * 26 25 24 28 28 C 1.37746 * 120.66844 * 0.02562 * 27 26 25 29 29 C 1.37681 * 125.06716 * 84.72335 * 21 20 18 30 30 H 0.97002 * 119.99689 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.59301 * 246.15888 * 10 9 7 32 32 H 1.09010 * 109.58462 * 6.43914 * 10 9 7 33 33 H 1.09005 * 109.49285 * 174.58736 * 11 10 9 34 34 H 1.08996 * 109.49986 * 294.68745 * 11 10 9 35 35 H 1.08998 * 109.46526 * 58.65594 * 12 11 10 36 36 H 1.09001 * 109.46145 * 178.62610 * 12 11 10 37 37 H 1.08997 * 109.50120 * 181.31924 * 13 12 11 38 38 H 1.09005 * 109.49278 * 301.38804 * 13 12 11 39 39 H 1.09001 * 109.46632 * 180.32831 * 16 14 9 40 40 H 1.08998 * 109.47448 * 300.32271 * 16 14 9 41 41 H 0.96996 * 119.99751 * 0.02562 * 17 16 14 42 42 H 1.09001 * 109.47469 * 300.00444 * 20 18 17 43 43 H 1.08999 * 109.46866 * 60.00679 * 20 18 17 44 44 H 1.07998 * 125.03904 * 359.97438 * 22 21 20 45 45 H 1.07994 * 126.50541 * 180.02562 * 23 22 21 46 46 H 1.07994 * 120.12112 * 0.03176 * 25 24 23 47 47 H 1.07999 * 119.73821 * 179.97438 * 26 25 24 48 48 H 1.07998 * 119.66427 * 179.97438 * 27 26 25 49 49 H 1.07991 * 120.11055 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4032 2.1010 1.3958 5 1 3.5918 1.4146 -0.6033 6 1 1.4982 2.6235 -0.7925 7 6 2.0103 -1.2022 0.0005 8 1 1.5062 -2.1167 -0.2749 9 7 3.3339 -1.2284 0.3502 10 6 3.8756 -0.2514 1.3045 11 6 4.5884 -1.0058 2.4314 12 6 5.6369 -1.9434 1.8284 13 6 4.9481 -2.9666 0.9225 14 6 4.2382 -2.2380 -0.2171 15 1 4.9778 -1.7505 -0.8522 16 6 3.4319 -3.2429 -1.0422 17 7 2.7486 -2.5428 -2.1328 18 6 1.9748 -3.2312 -2.9951 19 8 1.8436 -4.4302 -2.8681 20 6 1.2714 -2.5109 -4.1166 21 7 0.4995 -3.4731 -4.9067 22 6 0.9389 -4.0838 -6.0496 23 6 -0.0112 -4.9051 -6.5240 24 6 -1.1526 -4.8123 -5.6103 25 6 -2.4127 -5.4121 -5.5675 26 6 -3.2755 -5.1060 -4.5532 27 6 -2.9095 -4.2026 -3.5646 28 6 -1.6718 -3.5985 -3.5881 29 6 -0.7739 -3.9022 -4.6067 30 1 -0.4850 0.8401 0.0004 31 1 4.5850 0.4015 0.7960 32 1 3.0623 0.3447 1.7184 33 1 5.0770 -0.2920 3.0946 34 1 3.8608 -1.5887 2.9960 35 1 6.3501 -1.3626 1.2436 36 1 6.1625 -2.4635 2.6293 37 1 5.6927 -3.6486 0.5119 38 1 4.2175 -3.5315 1.5015 39 1 4.1037 -3.9942 -1.4574 40 1 2.6940 -3.7285 -0.4036 41 1 2.8537 -1.5839 -2.2346 42 1 0.5992 -1.7601 -3.7011 43 1 2.0090 -2.0247 -4.7551 44 1 1.9063 -3.9276 -6.5035 45 1 0.0535 -5.5179 -7.4108 46 1 -2.7044 -6.1155 -6.3333 47 1 -4.2502 -5.5698 -4.5207 48 1 -3.6026 -3.9705 -2.7695 49 1 -1.3966 -2.8969 -2.8147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713258721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:32 Heat of formation + Delta-G solvation = 38.347947 kcal Electronic energy + Delta-G solvation = -30327.083080 eV Core-core repulsion = 26447.666721 eV Total energy + Delta-G solvation = -3879.416358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.31097 -40.73298 -39.51420 -37.84378 -35.82600 -34.89894 -33.91725 -32.65456 -32.42203 -31.31516 -29.77807 -28.50759 -27.34100 -25.95583 -24.34997 -23.61604 -22.61749 -22.29499 -21.76141 -21.10118 -20.74284 -18.84715 -18.16112 -18.03345 -17.45151 -17.31736 -16.72656 -16.59707 -16.26571 -15.89148 -15.49465 -15.28865 -15.19094 -14.85596 -14.80920 -14.73877 -14.40981 -14.25278 -13.99626 -13.74529 -13.72811 -13.47396 -13.24133 -13.11784 -12.88410 -12.54915 -12.49633 -12.47447 -12.30387 -11.98125 -11.74428 -11.70171 -11.50919 -11.31429 -11.23018 -10.99129 -10.67089 -10.52346 -9.93270 -9.08380 -8.82517 -8.55552 -8.07990 -5.44983 0.23662 0.71384 1.34693 1.43661 1.52687 1.54380 1.66832 1.92179 2.44623 2.46951 3.02434 3.06777 3.31031 3.72348 3.75361 3.85119 3.88908 3.98808 4.05363 4.10942 4.16953 4.18235 4.29153 4.30374 4.40481 4.49469 4.57161 4.60761 4.61575 4.69434 4.79814 4.84186 4.91398 4.94833 5.04025 5.07972 5.14230 5.18593 5.22216 5.28831 5.29374 5.53469 5.58831 5.61536 5.69970 5.88083 5.93532 5.93617 6.24056 6.29829 6.38096 6.63318 6.94538 7.25236 7.66990 8.07629 9.09767 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014306 B = 0.003358 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.807923 B = 8335.722638 C = 9224.112612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.027 4.027 3 Si 0.940 3.060 4 H -0.293 1.293 5 H -0.245 1.245 6 H -0.320 1.320 7 C -0.230 4.230 8 H 0.057 0.943 9 N -0.616 5.616 10 C 0.119 3.881 11 C -0.133 4.133 12 C -0.102 4.102 13 C -0.127 4.127 14 C 0.165 3.835 15 H 0.060 0.940 16 C 0.141 3.859 17 N -0.687 5.687 18 C 0.491 3.509 19 O -0.584 6.584 20 C 0.094 3.906 21 N -0.473 5.473 22 C 0.055 3.945 23 C -0.215 4.215 24 C -0.131 4.131 25 C -0.080 4.080 26 C -0.151 4.151 27 C -0.112 4.112 28 C -0.150 4.150 29 C 0.079 3.921 30 H 0.257 0.743 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.030 0.970 41 H 0.413 0.587 42 H 0.107 0.893 43 H 0.160 0.840 44 H 0.202 0.798 45 H 0.174 0.826 46 H 0.149 0.851 47 H 0.151 0.849 48 H 0.133 0.867 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.406 -5.052 -9.605 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.222 4.222 3 Si 0.770 3.230 4 H -0.221 1.221 5 H -0.168 1.168 6 H -0.249 1.249 7 C -0.360 4.360 8 H 0.075 0.925 9 N -0.342 5.342 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.140 4.140 13 C -0.166 4.166 14 C 0.060 3.940 15 H 0.077 0.923 16 C 0.017 3.983 17 N -0.338 5.338 18 C 0.276 3.724 19 O -0.465 6.465 20 C -0.031 4.031 21 N -0.155 5.155 22 C -0.068 4.068 23 C -0.240 4.240 24 C -0.136 4.136 25 C -0.098 4.098 26 C -0.169 4.169 27 C -0.131 4.131 28 C -0.170 4.170 29 C -0.026 4.026 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.250 0.750 42 H 0.125 0.875 43 H 0.178 0.822 44 H 0.219 0.781 45 H 0.192 0.808 46 H 0.167 0.833 47 H 0.169 0.831 48 H 0.151 0.849 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.430 -5.581 -9.361 13.190 hybrid contribution -0.360 1.652 0.852 1.893 sum 7.070 -3.929 -8.509 11.740 Atomic orbital electron populations 1.69966 1.07452 1.26722 1.56066 1.25824 0.95470 1.00374 1.00506 0.86038 0.79433 0.80808 0.76702 1.22066 1.16831 1.24935 1.18747 0.84861 0.92896 1.39486 0.92549 1.44533 1.05954 1.35281 1.48468 1.21442 0.96253 0.92029 0.90817 1.21956 0.98333 0.99262 0.97645 1.21360 0.96855 0.96752 0.99014 1.21856 0.99435 0.98214 0.97088 1.20858 0.91011 0.88758 0.93398 0.92263 1.21238 0.94734 0.94611 0.87747 1.45872 1.47592 1.12367 1.27948 1.21215 0.79398 0.87635 0.84150 1.90683 1.64037 1.16442 1.75368 1.21672 0.97518 0.90657 0.93271 1.43611 1.11688 1.38064 1.22184 1.22425 1.00935 0.96153 0.87332 1.21972 0.92639 1.06163 1.03196 1.19687 0.96853 1.00187 0.96890 1.20612 0.91297 0.98918 0.98974 1.20936 1.01171 0.99768 0.95069 1.21059 0.94998 0.97235 0.99778 1.20206 0.95061 1.03750 0.98010 1.18507 0.86624 0.99364 0.98155 0.93394 0.94249 0.94012 0.90568 0.93658 0.91078 0.90462 0.89352 0.93559 0.90428 0.95138 0.75005 0.87501 0.82213 0.78137 0.80848 0.83296 0.83150 0.84869 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.62 13.97 21.65 0.30 -56.32 16 2 C -0.03 -1.43 5.28 84.86 0.45 -0.98 16 3 Si 0.94 42.59 24.33 68.60 1.67 44.26 16 4 H -0.29 -13.30 6.74 99.48 0.67 -12.63 16 5 H -0.24 -9.97 6.31 99.48 0.63 -9.35 16 6 H -0.32 -15.15 7.11 99.48 0.71 -14.44 16 7 C -0.23 -11.51 7.50 84.04 0.63 -10.88 16 8 H 0.06 3.23 5.97 -2.91 -0.02 3.21 16 9 N -0.62 -25.19 2.74 -676.02 -1.86 -27.04 16 10 C 0.12 4.51 4.18 86.37 0.36 4.87 16 11 C -0.13 -4.04 6.08 30.67 0.19 -3.85 16 12 C -0.10 -2.51 5.89 30.62 0.18 -2.33 16 13 C -0.13 -3.46 5.35 30.53 0.16 -3.29 16 14 C 0.17 5.38 2.99 44.83 0.13 5.52 16 15 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 16 C 0.14 4.99 4.42 86.38 0.38 5.37 16 17 N -0.69 -24.49 3.82 -463.06 -1.77 -26.25 16 18 C 0.49 18.25 7.90 87.66 0.69 18.94 16 19 O -0.58 -26.40 16.42 -3.05 -0.05 -26.45 16 20 C 0.09 2.85 6.48 85.63 0.55 3.41 16 21 N -0.47 -15.32 2.27 -519.99 -1.18 -16.50 16 22 C 0.06 1.44 11.27 83.00 0.94 2.37 16 23 C -0.22 -5.67 11.08 23.51 0.26 -5.41 16 24 C -0.13 -4.23 6.37 -20.20 -0.13 -4.36 16 25 C -0.08 -2.20 10.05 22.23 0.22 -1.97 16 26 C -0.15 -4.12 9.97 22.04 0.22 -3.90 16 27 C -0.11 -3.65 10.01 22.30 0.22 -3.42 16 28 C -0.15 -5.80 10.00 22.37 0.22 -5.57 16 29 C 0.08 2.92 6.80 39.04 0.27 3.19 16 30 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.04 1.41 6.85 -2.39 -0.02 1.39 16 32 H 0.04 1.82 4.62 -2.38 -0.01 1.81 16 33 H 0.08 1.95 8.14 -2.38 -0.02 1.94 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.03 1.31 7.42 -2.39 -0.02 1.30 16 41 H 0.41 14.32 7.40 -92.71 -0.69 13.64 16 42 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 43 H 0.16 3.21 8.12 -2.39 -0.02 3.19 16 44 H 0.20 3.40 8.06 -2.91 -0.02 3.38 16 45 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 46 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 47 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 48 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 49 H 0.09 4.02 8.06 -2.92 -0.02 4.00 16 Total: -1.00 -73.67 385.64 3.22 -70.45 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: 0.15 Total: 40.14 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 5.96 Total: -2.28 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -4.50 Total: -126.11 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.05 Total: -26.45 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.67 Total: 44.26 kcal Total: -73.67 3.22 -70.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713258721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.797 kcal (2) G-P(sol) polarization free energy of solvation -73.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds