Wall clock time and date at job start Wed Apr 1 2020 00:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48497 * 109.47247 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46975 * 300.00032 * 3 2 1 6 6 H 1.48496 * 109.47125 * 59.99802 * 3 2 1 7 7 C 1.38805 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99786 * 165.36928 * 7 2 1 9 9 N 1.36930 * 120.00431 * 345.36314 * 7 2 1 10 10 C 1.46923 * 120.63367 * 328.35828 * 9 7 2 11 11 C 1.53197 * 108.89587 * 233.67890 * 10 9 7 12 12 C 1.53042 * 109.31071 * 305.29103 * 11 10 9 13 13 C 1.53044 * 109.53623 * 61.36193 * 12 11 10 14 14 C 1.47208 * 120.81370 * 148.49929 * 9 7 2 15 15 H 1.09006 * 109.55778 * 246.15672 * 14 9 7 16 16 C 1.52998 * 109.65368 * 6.46303 * 14 9 7 17 17 N 1.46500 * 109.47215 * 299.39446 * 16 14 9 18 18 C 1.34777 * 120.00269 * 179.97438 * 17 16 14 19 19 O 1.21278 * 119.99857 * 359.97438 * 18 17 16 20 20 C 1.50695 * 120.00053 * 179.97438 * 18 17 16 21 21 N 1.46507 * 109.46972 * 179.97438 * 20 18 17 22 22 C 1.36830 * 125.06462 * 265.02583 * 21 20 18 23 23 C 1.34235 * 109.92757 * 179.97438 * 22 21 20 24 24 C 1.46487 * 106.99949 * 0.02562 * 23 22 21 25 25 C 1.39628 * 134.03259 * 180.02562 * 24 23 22 26 26 C 1.36638 * 119.76284 * 179.21369 * 25 24 23 27 27 C 1.38832 * 120.52340 * 0.69774 * 26 25 24 28 28 C 1.37752 * 120.66976 * 359.53162 * 27 26 25 29 29 C 1.37686 * 125.05893 * 84.72258 * 21 20 18 30 30 H 0.97003 * 120.00152 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58895 * 113.81734 * 10 9 7 32 32 H 1.09007 * 109.58405 * 353.53408 * 10 9 7 33 33 H 1.08996 * 109.49452 * 65.24115 * 11 10 9 34 34 H 1.08999 * 109.49866 * 185.33949 * 11 10 9 35 35 H 1.08995 * 109.46072 * 181.38433 * 12 11 10 36 36 H 1.09003 * 109.45819 * 301.35951 * 12 11 10 37 37 H 1.09004 * 109.49556 * 58.59026 * 13 12 11 38 38 H 1.09005 * 109.49474 * 178.68025 * 13 12 11 39 39 H 1.09002 * 109.46847 * 59.38640 * 16 14 9 40 40 H 1.08992 * 109.47546 * 179.39269 * 16 14 9 41 41 H 0.97006 * 120.00146 * 359.97438 * 17 16 14 42 42 H 1.08990 * 109.47438 * 299.99855 * 20 18 17 43 43 H 1.09005 * 109.47027 * 60.00497 * 20 18 17 44 44 H 1.08001 * 125.03185 * 359.96326 * 22 21 20 45 45 H 1.07997 * 126.50007 * 180.02562 * 23 22 21 46 46 H 1.08001 * 120.11993 * 359.97104 * 25 24 23 47 47 H 1.07995 * 119.73658 * 180.27070 * 26 25 24 48 48 H 1.08001 * 119.66398 * 179.56079 * 27 26 25 49 49 H 1.08000 * 120.10933 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0640 -1.2172 -0.2368 9 7 1.3589 -2.3689 0.2986 10 6 0.2310 -2.3765 1.2401 11 6 0.5054 -3.4127 2.3346 12 6 0.7889 -4.7700 1.6870 13 6 2.0312 -4.6642 0.7995 14 6 1.7741 -3.6422 -0.3123 15 1 0.9837 -4.0071 -0.9684 16 6 3.0554 -3.4312 -1.1214 17 7 2.8065 -2.4542 -2.1843 18 6 3.7991 -2.1088 -3.0281 19 8 4.8984 -2.6065 -2.9073 20 6 3.5428 -1.1043 -4.1218 21 7 4.7702 -0.9012 -4.8957 22 6 5.6801 0.0974 -4.6788 23 6 6.6872 -0.0017 -5.5607 24 6 6.3983 -1.1581 -6.4123 25 6 7.0553 -1.7597 -7.4875 26 6 6.5177 -2.8697 -8.0757 27 6 5.3158 -3.3960 -7.6220 28 6 4.6486 -2.8155 -6.5658 29 6 5.1827 -1.6904 -5.9458 30 1 -0.4850 0.8401 0.0004 31 1 -0.6851 -2.6381 0.7107 32 1 0.1240 -1.3894 1.6900 33 1 1.3699 -3.1019 2.9212 34 1 -0.3656 -3.4946 2.9847 35 1 0.9602 -5.5146 2.4643 36 1 -0.0662 -5.0685 1.0803 37 1 2.8813 -4.3417 1.4007 38 1 2.2461 -5.6370 0.3570 39 1 3.8428 -3.0610 -0.4648 40 1 3.3661 -4.3778 -1.5635 41 1 1.9273 -2.0558 -2.2808 42 1 2.7560 -1.4750 -4.7786 43 1 3.2315 -0.1576 -3.6800 44 1 5.5997 0.8535 -3.9117 45 1 7.5472 0.6478 -5.6293 46 1 7.9912 -1.3564 -7.8452 47 1 7.0284 -3.3373 -8.9044 48 1 4.8999 -4.2697 -8.1017 49 1 3.7144 -3.2327 -6.2200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713258722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:37 Heat of formation + Delta-G solvation = 48.036486 kcal Electronic energy + Delta-G solvation = -30118.228495 eV Core-core repulsion = 26239.232264 eV Total energy + Delta-G solvation = -3878.996232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.25675 -39.22749 -37.79288 -36.80178 -34.26120 -33.16768 -32.81727 -31.02529 -30.22793 -29.99312 -28.77224 -27.20876 -25.76246 -24.52506 -22.58443 -22.23612 -21.50559 -20.92772 -20.41959 -19.76928 -19.17316 -17.36216 -16.98935 -16.37701 -16.26894 -15.70720 -15.38633 -15.13574 -14.70763 -14.30503 -14.15093 -13.96789 -13.73229 -13.64374 -13.48461 -13.09212 -12.97588 -12.88597 -12.57308 -12.49142 -12.15313 -12.12684 -11.69768 -11.52303 -11.44503 -11.27370 -11.07058 -10.88846 -10.75916 -10.64509 -10.36956 -10.23369 -10.08653 -9.78376 -9.60953 -9.50122 -9.30724 -8.70546 -8.36774 -8.03098 -7.53163 -6.76420 -5.95597 -3.42304 1.25334 1.75219 2.70170 2.94570 2.97005 3.19591 3.31757 3.33709 3.75116 4.06544 4.31128 4.75194 4.83314 4.94961 5.08751 5.10045 5.16043 5.19651 5.22139 5.25174 5.42198 5.53231 5.56703 5.59039 5.61302 5.78808 5.88205 5.89173 5.96539 6.04482 6.06681 6.16254 6.21207 6.29521 6.33361 6.52259 6.56123 6.62979 6.65888 6.69463 6.77617 6.88439 6.88551 6.92578 7.03093 7.28699 7.34290 7.38349 7.54806 7.67683 8.07194 8.29298 8.67220 9.04570 9.66134 10.25919 11.11062 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013767 B = 0.003300 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.354296 B = 8483.994863 C = 9939.768434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.009 3.991 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.251 4.251 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.136 3.864 17 N -0.689 5.689 18 C 0.487 3.513 19 O -0.544 6.544 20 C 0.088 3.912 21 N -0.463 5.463 22 C 0.067 3.933 23 C -0.212 4.212 24 C -0.108 4.108 25 C -0.074 4.074 26 C -0.152 4.152 27 C -0.106 4.106 28 C -0.122 4.122 29 C 0.111 3.889 30 H 0.254 0.746 31 H 0.019 0.981 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.416 0.584 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.166 0.834 45 H 0.145 0.855 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 -4.355 -9.375 11.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.191 4.191 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.381 4.381 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.341 5.341 18 C 0.271 3.729 19 O -0.422 6.422 20 C -0.037 4.037 21 N -0.145 5.145 22 C -0.058 4.058 23 C -0.236 4.236 24 C -0.113 4.113 25 C -0.093 4.093 26 C -0.172 4.172 27 C -0.125 4.125 28 C -0.143 4.143 29 C 0.005 3.995 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.253 0.747 42 H 0.130 0.870 43 H 0.140 0.860 44 H 0.184 0.816 45 H 0.163 0.837 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.426 -4.576 -9.084 11.528 hybrid contribution -0.156 1.155 0.364 1.221 sum 5.271 -3.420 -8.720 10.748 Atomic orbital electron populations 1.70021 1.05130 1.25481 1.53405 1.25082 0.95169 0.98074 1.00767 0.86436 0.79636 0.84411 0.77678 1.20211 1.21577 1.21367 1.19205 0.92079 0.84081 1.42746 0.91375 1.44129 1.37281 1.01958 1.47884 1.20738 0.88737 0.97404 0.88313 1.22192 1.00074 0.96548 0.99544 1.21362 0.97619 0.97384 0.98137 1.21936 0.98333 0.98229 0.98226 1.20779 0.93264 0.88510 0.92091 0.94984 1.21291 0.98420 0.90547 0.88499 1.45944 1.14472 1.43555 1.30129 1.20671 0.85382 0.83435 0.83433 1.90716 1.23555 1.54940 1.73012 1.21644 0.86307 1.01911 0.93880 1.43455 1.19664 1.24556 1.26822 1.21829 0.90127 0.93326 1.00528 1.21575 1.01179 1.01056 0.99815 1.19191 0.95504 0.97986 0.98584 1.20208 0.98984 0.95452 0.94659 1.20551 0.97119 0.97755 1.01727 1.20725 0.95538 0.99715 0.96523 1.20015 1.01072 0.95188 0.97987 1.18197 0.95717 0.94711 0.90896 0.93578 0.96300 0.89982 0.92826 0.93472 0.93652 0.92845 0.92083 0.92992 0.91573 0.92647 0.74680 0.87025 0.86013 0.81649 0.83746 0.86412 0.86435 0.86115 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.16 11.32 55.49 0.63 -22.53 16 2 C 0.01 0.21 4.95 -17.43 -0.09 0.13 16 3 Si 0.89 19.82 29.58 -169.99 -5.03 14.79 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -5.94 7.00 -15.06 -0.11 -6.04 16 8 H 0.07 1.67 5.93 -52.49 -0.31 1.36 16 9 N -0.59 -12.79 2.98 -164.56 -0.49 -13.28 16 10 C 0.17 3.76 5.26 -3.71 -0.02 3.74 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.11 -1.70 5.88 -26.69 -0.16 -1.85 16 13 C -0.13 -2.07 5.37 -26.61 -0.14 -2.21 16 14 C 0.16 2.95 3.00 -67.45 -0.20 2.75 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 16 C 0.14 2.47 4.43 -4.04 -0.02 2.45 16 17 N -0.69 -12.17 3.89 -60.30 -0.23 -12.41 16 18 C 0.49 8.63 7.90 -10.99 -0.09 8.54 16 19 O -0.54 -11.61 16.42 5.56 0.09 -11.52 16 20 C 0.09 1.27 6.48 -5.19 -0.03 1.24 16 21 N -0.46 -7.18 2.27 -115.71 -0.26 -7.44 16 22 C 0.07 0.97 11.27 -16.73 -0.19 0.78 16 23 C -0.21 -2.97 11.08 -37.67 -0.42 -3.39 16 24 C -0.11 -1.64 6.37 -105.14 -0.67 -2.31 16 25 C -0.07 -0.97 10.05 -39.64 -0.40 -1.37 16 26 C -0.15 -1.82 9.97 -39.94 -0.40 -2.22 16 27 C -0.11 -1.31 10.01 -39.54 -0.40 -1.71 16 28 C -0.12 -1.74 10.00 -39.43 -0.39 -2.14 16 29 C 0.11 1.76 6.79 -83.99 -0.57 1.19 16 30 H 0.25 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 2.02 6.26 -51.92 -0.32 1.69 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.34 7.41 -51.93 -0.38 0.95 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.42 7.47 7.44 -40.82 -0.30 7.17 16 42 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.12 1.60 8.12 -51.93 -0.42 1.18 16 44 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 45 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 48 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 49 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -29.54 392.91 -11.47 -41.01 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -7.65 Total: 10.63 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -4.45 Total: -5.18 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.36 Total: -55.66 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.54 -11.47 -41.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713258722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.048 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds