Wall clock time and date at job start Wed Apr 1 2020 00:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48497 * 109.47247 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46975 * 300.00032 * 3 2 1 6 6 H 1.48496 * 109.47125 * 59.99802 * 3 2 1 7 7 C 1.38805 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99786 * 165.36928 * 7 2 1 9 9 N 1.36930 * 120.00431 * 345.36314 * 7 2 1 10 10 C 1.46923 * 120.63367 * 328.35828 * 9 7 2 11 11 C 1.53197 * 108.89587 * 233.67890 * 10 9 7 12 12 C 1.53042 * 109.31071 * 305.29103 * 11 10 9 13 13 C 1.53044 * 109.53623 * 61.36193 * 12 11 10 14 14 C 1.47208 * 120.81370 * 148.49929 * 9 7 2 15 15 H 1.09006 * 109.55778 * 246.15672 * 14 9 7 16 16 C 1.52998 * 109.65368 * 6.46303 * 14 9 7 17 17 N 1.46500 * 109.47215 * 299.39446 * 16 14 9 18 18 C 1.34777 * 120.00269 * 179.97438 * 17 16 14 19 19 O 1.21278 * 119.99857 * 359.97438 * 18 17 16 20 20 C 1.50695 * 120.00053 * 179.97438 * 18 17 16 21 21 N 1.46507 * 109.46972 * 179.97438 * 20 18 17 22 22 C 1.36830 * 125.06462 * 265.02583 * 21 20 18 23 23 C 1.34235 * 109.92757 * 179.97438 * 22 21 20 24 24 C 1.46487 * 106.99949 * 0.02562 * 23 22 21 25 25 C 1.39628 * 134.03259 * 180.02562 * 24 23 22 26 26 C 1.36638 * 119.76284 * 179.21369 * 25 24 23 27 27 C 1.38832 * 120.52340 * 0.69774 * 26 25 24 28 28 C 1.37752 * 120.66976 * 359.53162 * 27 26 25 29 29 C 1.37686 * 125.05893 * 84.72258 * 21 20 18 30 30 H 0.97003 * 120.00152 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58895 * 113.81734 * 10 9 7 32 32 H 1.09007 * 109.58405 * 353.53408 * 10 9 7 33 33 H 1.08996 * 109.49452 * 65.24115 * 11 10 9 34 34 H 1.08999 * 109.49866 * 185.33949 * 11 10 9 35 35 H 1.08995 * 109.46072 * 181.38433 * 12 11 10 36 36 H 1.09003 * 109.45819 * 301.35951 * 12 11 10 37 37 H 1.09004 * 109.49556 * 58.59026 * 13 12 11 38 38 H 1.09005 * 109.49474 * 178.68025 * 13 12 11 39 39 H 1.09002 * 109.46847 * 59.38640 * 16 14 9 40 40 H 1.08992 * 109.47546 * 179.39269 * 16 14 9 41 41 H 0.97006 * 120.00146 * 359.97438 * 17 16 14 42 42 H 1.08990 * 109.47438 * 299.99855 * 20 18 17 43 43 H 1.09005 * 109.47027 * 60.00497 * 20 18 17 44 44 H 1.08001 * 125.03185 * 359.96326 * 22 21 20 45 45 H 1.07997 * 126.50007 * 180.02562 * 23 22 21 46 46 H 1.08001 * 120.11993 * 359.97104 * 25 24 23 47 47 H 1.07995 * 119.73658 * 180.27070 * 26 25 24 48 48 H 1.08001 * 119.66398 * 179.56079 * 27 26 25 49 49 H 1.08000 * 120.10933 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0640 -1.2172 -0.2368 9 7 1.3589 -2.3689 0.2986 10 6 0.2310 -2.3765 1.2401 11 6 0.5054 -3.4127 2.3346 12 6 0.7889 -4.7700 1.6870 13 6 2.0312 -4.6642 0.7995 14 6 1.7741 -3.6422 -0.3123 15 1 0.9837 -4.0071 -0.9684 16 6 3.0554 -3.4312 -1.1214 17 7 2.8065 -2.4542 -2.1843 18 6 3.7991 -2.1088 -3.0281 19 8 4.8984 -2.6065 -2.9073 20 6 3.5428 -1.1043 -4.1218 21 7 4.7702 -0.9012 -4.8957 22 6 5.6801 0.0974 -4.6788 23 6 6.6872 -0.0017 -5.5607 24 6 6.3983 -1.1581 -6.4123 25 6 7.0553 -1.7597 -7.4875 26 6 6.5177 -2.8697 -8.0757 27 6 5.3158 -3.3960 -7.6220 28 6 4.6486 -2.8155 -6.5658 29 6 5.1827 -1.6904 -5.9458 30 1 -0.4850 0.8401 0.0004 31 1 -0.6851 -2.6381 0.7107 32 1 0.1240 -1.3894 1.6900 33 1 1.3699 -3.1019 2.9212 34 1 -0.3656 -3.4946 2.9847 35 1 0.9602 -5.5146 2.4643 36 1 -0.0662 -5.0685 1.0803 37 1 2.8813 -4.3417 1.4007 38 1 2.2461 -5.6370 0.3570 39 1 3.8428 -3.0610 -0.4648 40 1 3.3661 -4.3778 -1.5635 41 1 1.9273 -2.0558 -2.2808 42 1 2.7560 -1.4750 -4.7786 43 1 3.2315 -0.1576 -3.6800 44 1 5.5997 0.8535 -3.9117 45 1 7.5472 0.6478 -5.6293 46 1 7.9912 -1.3564 -7.8452 47 1 7.0284 -3.3373 -8.9044 48 1 4.8999 -4.2697 -8.1017 49 1 3.7144 -3.2327 -6.2200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713258722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:36 Heat of formation + Delta-G solvation = 34.093113 kcal Electronic energy + Delta-G solvation = -30118.833125 eV Core-core repulsion = 26239.232264 eV Total energy + Delta-G solvation = -3879.600862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.32901 -40.66331 -39.30031 -37.83049 -35.74387 -34.90862 -33.94097 -32.45366 -31.73224 -31.27581 -29.78724 -28.46777 -27.35194 -26.03984 -23.84541 -23.59440 -22.59723 -22.30633 -21.74440 -21.00011 -20.67162 -18.81049 -18.17460 -17.88764 -17.47645 -17.24426 -16.60452 -16.25806 -16.21016 -15.79948 -15.63414 -15.37195 -14.88758 -14.84718 -14.71992 -14.59102 -14.32218 -14.09488 -13.99124 -13.66591 -13.58014 -13.44997 -13.08119 -12.86065 -12.76910 -12.58505 -12.49585 -12.46495 -12.33547 -12.03485 -11.82384 -11.73238 -11.55239 -11.24142 -11.11165 -10.94807 -10.54442 -10.51563 -9.91693 -9.08126 -8.57919 -8.56799 -7.83601 -5.31040 0.23808 0.73050 1.38465 1.47903 1.52962 1.55619 1.61570 1.88480 2.42601 2.49337 3.04152 3.31445 3.55089 3.70295 3.76670 3.82948 3.95322 3.97603 4.10610 4.17649 4.19932 4.25349 4.30875 4.40820 4.52717 4.56044 4.61242 4.62412 4.72733 4.78146 4.84678 4.95054 4.97896 5.05336 5.12344 5.18412 5.19955 5.26194 5.35211 5.44240 5.56271 5.58613 5.61374 5.71737 5.74261 5.81916 5.87836 5.91815 6.29245 6.33277 6.43459 6.64152 7.18089 7.24612 7.86841 8.42322 9.20839 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013767 B = 0.003300 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.354296 B = 8483.994863 C = 9939.768434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.029 4.029 3 Si 0.936 3.064 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.299 1.299 7 C -0.237 4.237 8 H 0.059 0.941 9 N -0.601 5.601 10 C 0.179 3.821 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.123 4.123 14 C 0.161 3.839 15 H 0.036 0.964 16 C 0.143 3.857 17 N -0.688 5.688 18 C 0.489 3.511 19 O -0.582 6.582 20 C 0.093 3.907 21 N -0.472 5.472 22 C 0.045 3.955 23 C -0.214 4.214 24 C -0.136 4.136 25 C -0.083 4.083 26 C -0.153 4.153 27 C -0.104 4.104 28 C -0.145 4.145 29 C 0.083 3.917 30 H 0.248 0.752 31 H 0.003 0.997 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.415 0.585 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.181 0.819 45 H 0.167 0.833 46 H 0.140 0.860 47 H 0.149 0.851 48 H 0.148 0.852 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.693 -5.828 -10.436 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.226 4.226 3 Si 0.766 3.234 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.227 1.227 7 C -0.367 4.367 8 H 0.077 0.923 9 N -0.326 5.326 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.163 4.163 14 C 0.055 3.945 15 H 0.053 0.947 16 C 0.018 3.982 17 N -0.339 5.339 18 C 0.274 3.726 19 O -0.463 6.463 20 C -0.033 4.033 21 N -0.155 5.155 22 C -0.080 4.080 23 C -0.239 4.239 24 C -0.141 4.141 25 C -0.101 4.101 26 C -0.172 4.172 27 C -0.123 4.123 28 C -0.165 4.165 29 C -0.023 4.023 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.252 0.748 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.198 0.802 45 H 0.184 0.816 46 H 0.158 0.842 47 H 0.167 0.833 48 H 0.166 0.834 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.066 -6.061 -10.151 13.288 hybrid contribution -0.303 1.529 0.654 1.690 sum 5.762 -4.532 -9.498 11.998 Atomic orbital electron populations 1.70126 1.06028 1.25378 1.55259 1.25488 0.95556 0.99946 1.01627 0.85699 0.78468 0.82103 0.77144 1.20492 1.20961 1.22657 1.19190 0.91597 0.84909 1.41031 0.92305 1.44303 1.37077 1.02692 1.48485 1.20556 0.88237 0.96818 0.89080 1.22059 1.00437 0.96673 0.98360 1.21344 0.97463 0.96457 0.98730 1.21901 0.98282 0.98704 0.97388 1.20914 0.93152 0.87524 0.92885 0.94666 1.21208 0.97517 0.91117 0.88324 1.45952 1.14441 1.43445 1.30019 1.21209 0.84495 0.83256 0.83601 1.90689 1.24994 1.56512 1.74134 1.21693 0.86935 1.01380 0.93266 1.43570 1.20037 1.24909 1.26981 1.22234 0.90476 0.93872 1.01405 1.21936 1.01621 1.01027 0.99314 1.19617 0.95941 0.98783 0.99755 1.20581 0.99760 0.95705 0.94053 1.20974 0.96879 0.97213 1.02094 1.21145 0.95470 1.00082 0.95621 1.20281 1.01849 0.95404 0.99015 1.18605 0.96582 0.95574 0.91502 0.94212 0.97898 0.93482 0.93725 0.91738 0.90849 0.92287 0.93009 0.90092 0.94009 0.91239 0.74803 0.84634 0.84878 0.80202 0.81590 0.84189 0.83295 0.83398 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.62 11.32 21.65 0.24 -48.37 16 2 C -0.03 -1.46 4.95 84.86 0.42 -1.04 16 3 Si 0.94 41.36 29.58 68.60 2.03 43.39 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 7 C -0.24 -11.30 7.00 84.03 0.59 -10.71 16 8 H 0.06 2.92 5.93 -2.91 -0.02 2.91 16 9 N -0.60 -26.18 2.98 -674.56 -2.01 -28.19 16 10 C 0.18 7.79 5.26 86.36 0.45 8.24 16 11 C -0.14 -4.70 6.08 30.67 0.19 -4.51 16 12 C -0.10 -2.95 5.88 30.62 0.18 -2.77 16 13 C -0.12 -3.72 5.37 30.67 0.16 -3.55 16 14 C 0.16 5.76 3.00 44.92 0.13 5.90 16 15 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 16 C 0.14 5.10 4.43 86.38 0.38 5.49 16 17 N -0.69 -24.25 3.89 -463.08 -1.80 -26.05 16 18 C 0.49 17.35 7.90 87.66 0.69 18.04 16 19 O -0.58 -25.14 16.42 -3.02 -0.05 -25.19 16 20 C 0.09 2.64 6.48 85.63 0.56 3.20 16 21 N -0.47 -14.61 2.27 -520.00 -1.18 -15.79 16 22 C 0.04 1.29 11.27 83.00 0.94 2.22 16 23 C -0.21 -5.93 11.08 23.51 0.26 -5.67 16 24 C -0.14 -4.06 6.37 -20.20 -0.13 -4.19 16 25 C -0.08 -2.01 10.05 22.23 0.22 -1.79 16 26 C -0.15 -3.28 9.97 22.04 0.22 -3.06 16 27 C -0.10 -2.38 10.01 22.30 0.22 -2.16 16 28 C -0.14 -4.03 10.00 22.37 0.22 -3.81 16 29 C 0.08 2.61 6.79 39.03 0.27 2.88 16 30 H 0.25 12.94 8.31 -92.71 -0.77 12.17 16 31 H 0.00 0.13 8.14 -2.39 -0.02 0.12 16 32 H 0.05 2.37 6.26 -2.38 -0.01 2.36 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.04 1.70 7.41 -2.39 -0.02 1.69 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.41 14.90 7.44 -92.70 -0.69 14.21 16 42 H 0.14 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.13 3.45 8.12 -2.38 -0.02 3.43 16 44 H 0.18 4.37 8.06 -2.91 -0.02 4.35 16 45 H 0.17 3.60 8.06 -2.91 -0.02 3.57 16 46 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 47 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 48 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 49 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -64.84 392.91 3.47 -61.37 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: 0.26 Total: 36.13 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 5.98 Total: 2.71 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -4.75 Total: -118.41 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.05 Total: -25.19 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -64.84 3.47 -61.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713258722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.459 kcal (2) G-P(sol) polarization free energy of solvation -64.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds