Wall clock time and date at job start Wed Apr 1 2020 00:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99609 * 2 1 4 4 H 1.48491 * 109.47017 * 89.99765 * 3 2 1 5 5 H 1.48499 * 109.47083 * 210.00230 * 3 2 1 6 6 H 1.48498 * 109.46874 * 330.00037 * 3 2 1 7 7 C 1.38810 * 120.00646 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00405 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99566 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99690 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47137 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.88219 * 308.87306 * 11 10 9 13 13 C 1.55156 * 111.00276 * 184.99857 * 11 10 9 14 14 C 1.54328 * 102.94016 * 206.41654 * 13 11 10 15 15 N 1.47019 * 107.26871 * 22.19747 * 14 13 11 16 16 C 1.34780 * 125.64888 * 181.10660 * 15 14 13 17 17 O 1.21590 * 120.00217 * 174.09401 * 16 15 14 18 18 C 1.47523 * 119.99820 * 354.08334 * 16 15 14 19 19 C 1.39798 * 120.06589 * 7.33023 * 18 16 15 20 20 C 1.37609 * 119.92547 * 179.78098 * 19 18 16 21 21 C 1.39217 * 120.07219 * 0.47242 * 20 19 18 22 22 N 1.39050 * 119.93395 * 179.76359 * 21 20 19 23 23 C 1.48224 * 111.00456 * 129.68955 * 22 21 20 24 24 C 1.51117 * 105.36130 * 144.89749 * 23 22 21 25 25 C 1.30958 * 109.45885 * 343.02604 * 24 23 22 26 26 C 1.48231 * 110.99910 * 243.32841 * 22 21 20 27 27 C 1.39218 * 120.13513 * 359.77816 * 21 20 19 28 28 C 1.37606 * 120.07291 * 359.97438 * 27 21 20 29 29 C 1.47429 * 108.70640 * 1.05386 * 15 14 13 30 30 H 0.97004 * 119.99349 * 179.97438 * 1 2 3 31 31 H 0.96993 * 120.00371 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46987 * 299.99299 * 10 9 7 33 33 H 1.08993 * 109.47644 * 59.99482 * 10 9 7 34 34 H 1.08998 * 110.71972 * 324.78158 * 13 11 10 35 35 H 1.09005 * 110.72319 * 88.05825 * 13 11 10 36 36 H 1.09006 * 109.87960 * 141.60899 * 14 13 11 37 37 H 1.08997 * 109.88603 * 262.77629 * 14 13 11 38 38 H 1.07994 * 120.03785 * 359.97438 * 19 18 16 39 39 H 1.08002 * 119.96445 * 180.22291 * 20 19 18 40 40 H 1.08995 * 110.26796 * 263.87580 * 23 22 21 41 41 H 1.09005 * 110.26552 * 25.93045 * 23 22 21 42 42 H 1.08007 * 125.27107 * 163.00958 * 24 23 22 43 43 H 1.08003 * 125.27561 * 179.97438 * 25 24 23 44 44 H 1.08998 * 110.26920 * 334.07490 * 26 22 21 45 45 H 1.09008 * 110.26218 * 96.12830 * 26 22 21 46 46 H 1.08002 * 119.96509 * 179.97438 * 27 21 20 47 47 H 1.07997 * 120.03577 * 179.97438 * 28 27 21 48 48 H 1.09000 * 110.36551 * 217.03851 * 29 15 14 49 49 H 1.08997 * 110.36241 * 94.71398 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 1.4000 5 1 3.5476 1.4404 -0.7001 6 1 1.4475 2.6527 -0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6566 0.0017 11 6 1.0642 -4.8197 0.0008 12 1 0.3249 -4.6995 0.7928 13 6 1.7996 -6.1800 0.1281 14 6 0.8258 -7.1644 -0.5533 15 7 -0.0310 -6.3783 -1.4530 16 6 -1.0278 -6.8689 -2.2161 17 8 -1.7431 -6.1112 -2.8427 18 6 -1.2508 -8.3252 -2.2911 19 6 -0.5330 -9.1876 -1.4572 20 6 -0.7466 -10.5452 -1.5265 21 6 -1.6692 -11.0609 -2.4326 22 7 -1.8792 -12.4336 -2.5036 23 6 -3.3247 -12.7543 -2.4333 24 6 -3.5135 -13.9515 -3.3360 25 6 -2.4765 -14.0691 -4.1271 26 6 -1.4906 -12.9624 -3.8327 27 6 -2.3818 -10.2051 -3.2680 28 6 -2.1764 -8.8461 -3.2000 29 6 0.3799 -4.9642 -1.3814 30 1 -0.4849 -0.8401 -0.0004 31 1 0.3558 -2.3881 0.0005 32 1 2.6856 -3.7147 -0.8879 33 1 2.6844 -3.7140 0.8920 34 1 2.7532 -6.1536 -0.3991 35 1 1.9441 -6.4437 1.1759 36 1 1.3862 -7.9029 -1.1266 37 1 0.2147 -7.6623 0.1995 38 1 0.1861 -8.7885 -0.7572 39 1 -0.1950 -11.2118 -0.8800 40 1 -3.6067 -13.0043 -1.4106 41 1 -3.9161 -11.9126 -2.7938 42 1 -4.3707 -14.6085 -3.3295 43 1 -2.3460 -14.8382 -4.8741 44 1 -1.5654 -12.1794 -4.5872 45 1 -0.4760 -13.3597 -3.7990 46 1 -3.0966 -10.6081 -3.9702 47 1 -2.7292 -8.1828 -3.8487 48 1 -0.4915 -4.3124 -1.4433 49 1 1.0850 -4.7332 -2.1798 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713354121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:54 Heat of formation + Delta-G solvation = 77.040186 kcal Electronic energy + Delta-G solvation = -28576.564586 eV Core-core repulsion = 24698.826049 eV Total energy + Delta-G solvation = -3877.738537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18187 -40.27073 -38.25743 -37.45765 -35.02708 -33.48442 -32.47198 -31.38804 -30.43580 -29.58149 -28.94496 -28.39996 -25.53370 -24.50530 -23.38889 -22.91739 -22.31008 -21.23455 -20.28377 -19.97183 -19.91361 -17.78196 -17.65679 -17.13886 -16.54792 -16.08257 -15.90948 -14.98762 -14.94364 -14.81122 -14.49594 -14.23179 -13.99410 -13.89243 -13.65102 -13.57215 -13.40017 -13.22371 -13.03199 -12.78602 -12.73335 -12.62983 -12.25055 -12.14377 -11.96626 -11.82391 -11.42260 -10.95599 -10.76145 -10.63023 -10.56072 -10.42337 -10.17132 -9.99249 -9.95741 -9.36614 -9.15983 -9.08835 -8.87899 -8.86694 -8.64626 -7.00223 -6.08855 -3.09248 0.44503 1.02969 1.61648 2.63317 2.88642 3.33822 3.52814 3.53369 3.58109 3.72235 4.12359 4.27016 4.29517 4.39150 4.52438 4.57383 4.64245 4.78528 4.82237 4.82772 4.94906 4.98267 4.98779 5.07265 5.12686 5.18872 5.20751 5.26261 5.38748 5.47940 5.62977 5.66907 5.77124 5.78201 5.81366 5.85649 5.87689 5.87969 5.91708 6.01140 6.02475 6.14305 6.23052 6.27646 6.29245 6.36860 6.59939 6.71724 6.86920 7.44972 7.81608 8.09822 8.77278 9.23650 10.10080 10.24320 11.39642 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.034396 B = 0.001794 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.863882 B =15602.180431 C =16095.237990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.045 4.045 3 Si 1.084 2.916 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.744 5.744 10 C 0.171 3.829 11 C -0.107 4.107 12 H 0.085 0.915 13 C -0.128 4.128 14 C 0.090 3.910 15 N -0.612 5.612 16 C 0.568 3.432 17 O -0.535 6.535 18 C -0.128 4.128 19 C -0.117 4.117 20 C -0.100 4.100 21 C 0.096 3.904 22 N -0.471 5.471 23 C 0.050 3.950 24 C -0.167 4.167 25 C -0.168 4.168 26 C 0.055 3.945 27 C -0.162 4.162 28 C -0.049 4.049 29 C 0.115 3.885 30 H 0.255 0.745 31 H 0.367 0.633 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.167 0.833 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.126 0.874 47 H 0.137 0.863 48 H 0.083 0.917 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 -31.947 -4.922 32.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.243 4.243 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.390 5.390 10 C 0.043 3.957 11 C -0.127 4.127 12 H 0.103 0.897 13 C -0.166 4.166 14 C -0.033 4.033 15 N -0.345 5.345 16 C 0.358 3.642 17 O -0.413 6.413 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.119 4.119 21 C 0.001 3.999 22 N -0.192 5.192 23 C -0.076 4.076 24 C -0.185 4.185 25 C -0.186 4.186 26 C -0.071 4.071 27 C -0.181 4.181 28 C -0.069 4.069 29 C -0.006 4.006 30 H 0.067 0.933 31 H 0.200 0.800 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.183 0.817 39 H 0.154 0.846 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.144 0.856 47 H 0.154 0.846 48 H 0.101 0.899 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.647 -30.132 -4.868 30.638 hybrid contribution -0.611 -1.478 -0.670 1.734 sum -3.258 -31.611 -5.538 32.257 Atomic orbital electron populations 1.70848 1.06055 1.28500 1.53401 1.25793 0.97059 1.01046 1.00361 0.83188 0.73859 0.75309 0.76206 1.22318 1.22159 1.21374 1.20043 0.92035 0.85780 1.48685 0.91690 1.42380 1.04905 1.00927 1.90797 1.20520 0.92590 0.84270 0.98348 1.22619 0.98542 0.94954 0.96564 0.89681 1.22737 0.98334 0.94176 1.01377 1.22555 0.92849 0.94980 0.92873 1.48416 1.33059 1.10109 1.42923 1.17884 0.79492 0.87721 0.79097 1.90814 1.45695 1.59624 1.45126 1.19989 1.00170 0.92886 1.00020 1.22805 0.98864 0.93266 0.98583 1.20963 0.97957 0.94745 0.98243 1.19213 0.96475 0.88433 0.95754 1.63120 1.15907 1.10380 1.29827 1.22281 0.87861 0.96416 1.00994 1.23581 0.99355 0.98175 0.97439 1.23579 0.95921 0.98949 1.00163 1.22220 1.00080 0.95908 0.88864 1.21568 1.01841 0.93937 1.00804 1.21131 0.94946 0.94727 0.96079 1.22380 1.00063 0.80578 0.97623 0.93324 0.79955 0.95906 0.95657 0.90018 0.89650 0.90386 0.90391 0.81667 0.84647 0.89025 0.91408 0.84353 0.84349 0.91675 0.89036 0.85566 0.84561 0.89865 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.69 13.70 55.49 0.76 -28.93 16 2 C -0.04 -1.32 5.50 -17.43 -0.10 -1.42 16 3 Si 1.08 26.27 29.92 -169.99 -5.09 21.19 16 4 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.33 -9.53 9.99 -15.06 -0.15 -9.68 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.74 -18.74 5.55 -59.91 -0.33 -19.07 16 10 C 0.17 3.31 5.72 -4.04 -0.02 3.28 16 11 C -0.11 -1.63 3.05 -88.47 -0.27 -1.90 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 13 C -0.13 -1.36 6.42 -24.89 -0.16 -1.52 16 14 C 0.09 0.89 4.86 -3.06 -0.01 0.87 16 15 N -0.61 -8.63 3.33 -176.61 -0.59 -9.21 16 16 C 0.57 8.85 7.80 -12.47 -0.10 8.76 16 17 O -0.53 -10.44 16.59 5.29 0.09 -10.35 16 18 C -0.13 -1.57 5.88 -104.95 -0.62 -2.19 16 19 C -0.12 -1.12 8.59 -39.23 -0.34 -1.46 16 20 C -0.10 -0.88 9.95 -39.45 -0.39 -1.28 16 21 C 0.10 0.88 4.89 -83.86 -0.41 0.47 16 22 N -0.47 -3.88 5.56 -171.16 -0.95 -4.83 16 23 C 0.05 0.35 6.42 -4.04 -0.03 0.33 16 24 C -0.17 -0.95 10.94 -35.81 -0.39 -1.34 16 25 C -0.17 -0.95 10.95 -35.81 -0.39 -1.34 16 26 C 0.05 0.38 6.49 -4.04 -0.03 0.35 16 27 C -0.16 -1.52 7.71 -39.45 -0.30 -1.82 16 28 C -0.05 -0.56 9.58 -39.23 -0.38 -0.94 16 29 C 0.12 1.89 6.35 -2.53 -0.02 1.87 16 30 H 0.26 7.95 6.77 -40.82 -0.28 7.68 16 31 H 0.37 9.55 6.50 -40.82 -0.27 9.28 16 32 H 0.02 0.45 7.96 -51.93 -0.41 0.04 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.62 6.74 -51.93 -0.35 0.27 16 37 H 0.08 0.65 6.74 -51.93 -0.35 0.30 16 38 H 0.17 1.29 2.73 -58.78 -0.16 1.13 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.48 6.06 -51.93 -0.31 0.16 16 42 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 43 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 44 H 0.07 0.46 6.95 -51.93 -0.36 0.10 16 45 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 46 H 0.13 0.99 6.98 -52.49 -0.37 0.63 16 47 H 0.14 1.60 7.66 -52.49 -0.40 1.20 16 48 H 0.08 1.59 7.98 -51.93 -0.41 1.18 16 49 H 0.07 1.25 7.91 -51.93 -0.41 0.84 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -35.32 388.77 -11.44 -46.76 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -7.09 Total: 7.53 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -4.10 Total: -8.95 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -1.11 Total: -62.04 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 26.27 SS G_CDS: -5.09 Total: 21.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.32 -11.44 -46.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713354121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.803 kcal (2) G-P(sol) polarization free energy of solvation -35.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds