Wall clock time and date at job start Wed Apr 1 2020 00:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99609 * 2 1 4 4 H 1.48491 * 109.47017 * 89.99765 * 3 2 1 5 5 H 1.48499 * 109.47083 * 210.00230 * 3 2 1 6 6 H 1.48498 * 109.46874 * 330.00037 * 3 2 1 7 7 C 1.38810 * 120.00646 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00405 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99566 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99690 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47137 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.88219 * 308.87306 * 11 10 9 13 13 C 1.55156 * 111.00276 * 184.99857 * 11 10 9 14 14 C 1.54328 * 102.94016 * 206.41654 * 13 11 10 15 15 N 1.47019 * 107.26871 * 22.19747 * 14 13 11 16 16 C 1.34780 * 125.64888 * 181.10660 * 15 14 13 17 17 O 1.21590 * 120.00217 * 174.09401 * 16 15 14 18 18 C 1.47523 * 119.99820 * 354.08334 * 16 15 14 19 19 C 1.39798 * 120.06589 * 7.33023 * 18 16 15 20 20 C 1.37609 * 119.92547 * 179.78098 * 19 18 16 21 21 C 1.39217 * 120.07219 * 0.47242 * 20 19 18 22 22 N 1.39050 * 119.93395 * 179.76359 * 21 20 19 23 23 C 1.48224 * 111.00456 * 129.68955 * 22 21 20 24 24 C 1.51117 * 105.36130 * 144.89749 * 23 22 21 25 25 C 1.30958 * 109.45885 * 343.02604 * 24 23 22 26 26 C 1.48231 * 110.99910 * 243.32841 * 22 21 20 27 27 C 1.39218 * 120.13513 * 359.77816 * 21 20 19 28 28 C 1.37606 * 120.07291 * 359.97438 * 27 21 20 29 29 C 1.47429 * 108.70640 * 1.05386 * 15 14 13 30 30 H 0.97004 * 119.99349 * 179.97438 * 1 2 3 31 31 H 0.96993 * 120.00371 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46987 * 299.99299 * 10 9 7 33 33 H 1.08993 * 109.47644 * 59.99482 * 10 9 7 34 34 H 1.08998 * 110.71972 * 324.78158 * 13 11 10 35 35 H 1.09005 * 110.72319 * 88.05825 * 13 11 10 36 36 H 1.09006 * 109.87960 * 141.60899 * 14 13 11 37 37 H 1.08997 * 109.88603 * 262.77629 * 14 13 11 38 38 H 1.07994 * 120.03785 * 359.97438 * 19 18 16 39 39 H 1.08002 * 119.96445 * 180.22291 * 20 19 18 40 40 H 1.08995 * 110.26796 * 263.87580 * 23 22 21 41 41 H 1.09005 * 110.26552 * 25.93045 * 23 22 21 42 42 H 1.08007 * 125.27107 * 163.00958 * 24 23 22 43 43 H 1.08003 * 125.27561 * 179.97438 * 25 24 23 44 44 H 1.08998 * 110.26920 * 334.07490 * 26 22 21 45 45 H 1.09008 * 110.26218 * 96.12830 * 26 22 21 46 46 H 1.08002 * 119.96509 * 179.97438 * 27 21 20 47 47 H 1.07997 * 120.03577 * 179.97438 * 28 27 21 48 48 H 1.09000 * 110.36551 * 217.03851 * 29 15 14 49 49 H 1.08997 * 110.36241 * 94.71398 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 1.4000 5 1 3.5476 1.4404 -0.7001 6 1 1.4475 2.6527 -0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6566 0.0017 11 6 1.0642 -4.8197 0.0008 12 1 0.3249 -4.6995 0.7928 13 6 1.7996 -6.1800 0.1281 14 6 0.8258 -7.1644 -0.5533 15 7 -0.0310 -6.3783 -1.4530 16 6 -1.0278 -6.8689 -2.2161 17 8 -1.7431 -6.1112 -2.8427 18 6 -1.2508 -8.3252 -2.2911 19 6 -0.5330 -9.1876 -1.4572 20 6 -0.7466 -10.5452 -1.5265 21 6 -1.6692 -11.0609 -2.4326 22 7 -1.8792 -12.4336 -2.5036 23 6 -3.3247 -12.7543 -2.4333 24 6 -3.5135 -13.9515 -3.3360 25 6 -2.4765 -14.0691 -4.1271 26 6 -1.4906 -12.9624 -3.8327 27 6 -2.3818 -10.2051 -3.2680 28 6 -2.1764 -8.8461 -3.2000 29 6 0.3799 -4.9642 -1.3814 30 1 -0.4849 -0.8401 -0.0004 31 1 0.3558 -2.3881 0.0005 32 1 2.6856 -3.7147 -0.8879 33 1 2.6844 -3.7140 0.8920 34 1 2.7532 -6.1536 -0.3991 35 1 1.9441 -6.4437 1.1759 36 1 1.3862 -7.9029 -1.1266 37 1 0.2147 -7.6623 0.1995 38 1 0.1861 -8.7885 -0.7572 39 1 -0.1950 -11.2118 -0.8800 40 1 -3.6067 -13.0043 -1.4106 41 1 -3.9161 -11.9126 -2.7938 42 1 -4.3707 -14.6085 -3.3295 43 1 -2.3460 -14.8382 -4.8741 44 1 -1.5654 -12.1794 -4.5872 45 1 -0.4760 -13.3597 -3.7990 46 1 -3.0966 -10.6081 -3.9702 47 1 -2.7292 -8.1828 -3.8487 48 1 -0.4915 -4.3124 -1.4433 49 1 1.0850 -4.7332 -2.1798 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713354121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:53 Heat of formation + Delta-G solvation = 53.664571 kcal Electronic energy + Delta-G solvation = -28577.578229 eV Core-core repulsion = 24698.826049 eV Total energy + Delta-G solvation = -3878.752180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.98764 -41.18177 -39.23135 -38.52148 -36.83150 -34.49733 -33.73577 -32.28826 -31.94266 -30.49120 -29.60089 -29.42657 -26.98355 -25.75312 -24.70853 -23.79243 -23.58784 -21.96974 -21.53270 -21.05179 -20.34927 -19.39813 -18.57548 -18.33698 -17.71365 -17.06157 -16.75959 -16.39990 -16.06279 -15.84498 -15.66188 -15.60238 -15.14693 -14.88176 -14.76869 -14.66965 -14.41253 -14.22651 -13.95432 -13.87506 -13.61856 -13.38199 -13.22950 -13.00394 -12.94517 -12.79440 -12.57473 -12.52125 -12.27010 -12.00746 -11.87985 -11.71133 -11.69758 -11.20827 -11.16583 -10.94290 -10.68983 -10.14061 -9.96621 -9.71184 -9.41739 -9.12930 -8.41777 -5.35753 -0.40250 0.26951 1.20459 1.57391 1.61061 1.68946 1.76941 1.82756 2.64727 2.70795 2.74831 3.23215 3.39194 3.48226 3.55302 3.64560 3.76247 3.79122 3.83518 3.87814 4.00603 4.14102 4.16624 4.26408 4.30564 4.39663 4.43528 4.48144 4.50193 4.50590 4.58155 4.65980 4.68848 4.74185 4.88501 4.90948 4.94908 4.96616 5.02298 5.11203 5.15647 5.25250 5.28342 5.32935 5.36504 5.41627 5.57358 5.57849 5.85743 6.19429 6.34267 6.46284 6.92289 7.07180 7.97454 8.08799 9.10031 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.034396 B = 0.001794 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.863882 B =15602.180431 C =16095.237990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.109 4.109 3 Si 1.132 2.868 4 H -0.282 1.282 5 H -0.271 1.271 6 H -0.296 1.296 7 C -0.334 4.334 8 H 0.071 0.929 9 N -0.761 5.761 10 C 0.169 3.831 11 C -0.098 4.098 12 H 0.076 0.924 13 C -0.113 4.113 14 C 0.083 3.917 15 N -0.610 5.610 16 C 0.560 3.440 17 O -0.593 6.593 18 C -0.148 4.148 19 C -0.103 4.103 20 C -0.098 4.098 21 C 0.102 3.898 22 N -0.478 5.478 23 C 0.044 3.956 24 C -0.170 4.170 25 C -0.170 4.170 26 C 0.049 3.951 27 C -0.158 4.158 28 C -0.063 4.063 29 C 0.118 3.882 30 H 0.242 0.758 31 H 0.358 0.642 32 H 0.024 0.976 33 H 0.037 0.963 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.188 0.812 39 H 0.161 0.839 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.138 0.862 47 H 0.120 0.880 48 H 0.040 0.960 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -35.325 -3.898 35.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.299 4.299 3 Si 0.957 3.043 4 H -0.208 1.208 5 H -0.196 1.196 6 H -0.223 1.223 7 C -0.466 4.466 8 H 0.089 0.911 9 N -0.405 5.405 10 C 0.042 3.958 11 C -0.118 4.118 12 H 0.095 0.905 13 C -0.151 4.151 14 C -0.037 4.037 15 N -0.342 5.342 16 C 0.352 3.648 17 O -0.475 6.475 18 C -0.151 4.151 19 C -0.121 4.121 20 C -0.116 4.116 21 C 0.007 3.993 22 N -0.199 5.199 23 C -0.082 4.082 24 C -0.188 4.188 25 C -0.188 4.188 26 C -0.076 4.076 27 C -0.178 4.178 28 C -0.082 4.082 29 C -0.005 4.005 30 H 0.052 0.948 31 H 0.189 0.811 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.205 0.795 39 H 0.178 0.822 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.175 0.825 43 H 0.176 0.824 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.156 0.844 47 H 0.138 0.862 48 H 0.059 0.941 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.538 -33.593 -3.816 33.813 hybrid contribution -1.233 -0.568 -1.010 1.692 sum -1.771 -34.161 -4.826 34.546 Atomic orbital electron populations 1.70972 1.07353 1.27760 1.56447 1.27301 0.97076 1.04979 1.00577 0.82573 0.73520 0.71278 0.76959 1.20844 1.19582 1.22268 1.20455 0.92545 0.87067 1.46491 0.91065 1.42666 1.04766 1.02314 1.90760 1.20713 0.93259 0.83338 0.98466 1.22431 0.97902 0.96297 0.95158 0.90541 1.22773 0.98218 0.90501 1.03649 1.22953 0.92754 0.94972 0.93060 1.48471 1.33153 1.09438 1.43125 1.18519 0.78936 0.89000 0.78308 1.90772 1.47904 1.61225 1.47600 1.19816 1.02198 0.90979 1.02146 1.22957 0.98249 0.93153 0.97744 1.21243 0.97650 0.94618 0.98100 1.19431 0.95811 0.89007 0.95085 1.63198 1.16700 1.09418 1.30613 1.22364 0.87167 0.97036 1.01606 1.23741 1.00120 0.97921 0.97059 1.23754 0.95421 0.98969 1.00621 1.22302 1.00869 0.96279 0.88118 1.21632 1.02071 0.92955 1.01126 1.21107 0.95284 0.95522 0.96317 1.22133 0.98190 0.81825 0.98352 0.94812 0.81072 0.95801 0.94551 0.88786 0.86617 0.87213 0.87761 0.79523 0.82185 0.88777 0.91765 0.82492 0.82407 0.92111 0.88472 0.84416 0.86192 0.94090 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.55 13.70 21.65 0.30 -63.25 16 2 C -0.11 -6.48 5.50 84.86 0.47 -6.02 16 3 Si 1.13 53.09 29.92 68.60 2.05 55.14 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 7 C -0.33 -19.19 9.99 84.03 0.84 -18.35 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 9 N -0.76 -39.20 5.55 -343.45 -1.90 -41.10 16 10 C 0.17 6.46 5.72 86.38 0.49 6.95 16 11 C -0.10 -2.93 3.05 -9.40 -0.03 -2.96 16 12 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 13 C -0.11 -2.01 6.42 31.78 0.20 -1.80 16 14 C 0.08 1.37 4.86 86.73 0.42 1.79 16 15 N -0.61 -17.17 3.33 -830.93 -2.76 -19.93 16 16 C 0.56 18.16 7.80 86.69 0.68 18.84 16 17 O -0.59 -25.15 16.59 -4.00 -0.07 -25.22 16 18 C -0.15 -3.62 5.88 -20.08 -0.12 -3.74 16 19 C -0.10 -1.70 8.59 22.50 0.19 -1.50 16 20 C -0.10 -1.41 9.95 22.36 0.22 -1.19 16 21 C 0.10 1.65 4.89 38.47 0.19 1.83 16 22 N -0.48 -6.75 5.56 -695.44 -3.87 -10.62 16 23 C 0.04 0.53 6.42 85.43 0.55 1.08 16 24 C -0.17 -1.54 10.94 25.82 0.28 -1.26 16 25 C -0.17 -1.50 10.95 25.82 0.28 -1.22 16 26 C 0.05 0.58 6.49 85.43 0.55 1.13 16 27 C -0.16 -2.85 7.71 22.36 0.17 -2.68 16 28 C -0.06 -1.47 9.58 22.50 0.22 -1.25 16 29 C 0.12 4.05 6.35 86.85 0.55 4.60 16 30 H 0.24 15.81 6.77 -92.71 -0.63 15.18 16 31 H 0.36 19.56 6.50 -92.71 -0.60 18.96 16 32 H 0.02 0.93 7.96 -2.39 -0.02 0.91 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.50 8.04 -2.39 -0.02 1.48 16 35 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.11 1.23 6.74 -2.38 -0.02 1.21 16 37 H 0.10 1.26 6.74 -2.39 -0.02 1.24 16 38 H 0.19 2.10 2.73 -8.82 -0.02 2.08 16 39 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 0.82 6.06 -2.38 -0.01 0.81 16 42 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 43 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 44 H 0.06 0.77 6.95 -2.39 -0.02 0.75 16 45 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.14 2.09 6.98 -2.91 -0.02 2.06 16 47 H 0.12 3.12 7.66 -2.91 -0.02 3.10 16 48 H 0.04 1.72 7.98 -2.39 -0.02 1.71 16 49 H 0.06 2.24 7.91 -2.39 -0.02 2.22 16 Total: -1.00 -81.28 388.77 0.41 -80.87 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.49 Total: 29.85 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 6.17 Total: -5.74 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -8.24 Total: -134.90 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.07 Total: -25.22 kcal Atomic # 14 Polarization: 53.09 SS G_CDS: 2.05 Total: 55.14 kcal Total: -81.28 0.41 -80.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713354121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.539 kcal (2) G-P(sol) polarization free energy of solvation -81.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds