Wall clock time and date at job start Wed Apr 1 2020 01:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86802 * 120.00243 * 2 1 4 4 H 1.48498 * 109.47162 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46912 * 300.00460 * 3 2 1 6 6 H 1.48496 * 109.46760 * 60.00460 * 3 2 1 7 7 C 1.38811 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99722 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00058 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47086 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47144 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.49578 * 304.93976 * 12 11 10 14 14 C 1.53035 * 109.49880 * 184.84294 * 12 11 10 15 15 C 1.53041 * 109.54132 * 178.68321 * 14 12 11 16 16 C 1.52766 * 109.38219 * 61.23618 * 15 14 12 17 17 N 1.46931 * 109.00716 * 305.59203 * 16 15 14 18 18 C 1.34782 * 120.62665 * 233.58399 * 17 16 15 19 19 O 1.21594 * 119.99745 * 183.42094 * 18 17 16 20 20 C 1.47500 * 119.99970 * 3.42479 * 18 17 16 21 21 C 1.41193 * 126.36972 * 317.09843 * 20 18 17 22 22 C 1.37997 * 106.86476 * 180.02562 * 21 20 18 23 23 C 1.41381 * 131.98574 * 179.72031 * 22 21 20 24 24 C 1.35745 * 119.32941 * 179.97438 * 23 22 21 25 25 C 1.40823 * 119.72213 * 0.35811 * 24 23 22 26 26 C 1.34536 * 120.58069 * 359.82432 * 25 24 23 27 27 N 1.37434 * 120.74603 * 0.02562 * 26 25 24 28 28 C 1.35125 * 131.28618 * 179.97438 * 27 26 25 29 29 C 1.46923 * 118.74121 * 53.30724 * 17 16 15 30 30 H 0.97006 * 119.99839 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00248 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47098 * 59.99490 * 10 9 7 33 33 H 1.08997 * 109.47141 * 299.99749 * 10 9 7 34 34 H 1.09005 * 109.46932 * 60.00310 * 11 10 9 35 35 H 1.08997 * 109.47342 * 300.00136 * 11 10 9 36 36 H 1.09010 * 109.45717 * 298.70422 * 14 12 11 37 37 H 1.09000 * 109.46510 * 58.65916 * 14 12 11 38 38 H 1.08990 * 109.49893 * 181.30971 * 15 14 12 39 39 H 1.09000 * 109.49251 * 301.38028 * 15 14 12 40 40 H 1.08994 * 109.50846 * 185.71254 * 16 15 14 41 41 H 1.08995 * 109.43318 * 65.42312 * 16 15 14 42 42 H 1.08002 * 126.57057 * 0.05083 * 21 20 18 43 43 H 1.08001 * 120.33805 * 0.28946 * 23 22 21 44 44 H 1.08000 * 120.13774 * 180.15937 * 24 23 22 45 45 H 1.07998 * 119.70804 * 179.80565 * 25 24 23 46 46 H 1.08004 * 119.62609 * 179.97438 * 26 25 24 47 47 H 1.08004 * 125.61778 * 0.05728 * 28 27 26 48 48 H 1.09003 * 109.58614 * 66.43096 * 29 17 16 49 49 H 1.08999 * 109.59079 * 186.85453 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0636 -4.8197 0.0001 12 6 1.8286 -6.1448 -0.0005 13 1 2.5195 -6.1656 -0.8434 14 6 0.8390 -7.3059 -0.1217 15 6 1.6053 -8.6302 -0.1555 16 6 2.3888 -8.7959 1.1455 17 7 3.2363 -7.6127 1.3477 18 6 4.5607 -7.7450 1.5602 19 8 5.2409 -6.7632 1.7879 20 6 5.1848 -9.0807 1.5164 21 6 4.6675 -10.2656 2.0838 22 6 5.5715 -11.2705 1.8057 23 6 5.5824 -12.6478 2.1249 24 6 6.6221 -13.4175 1.7133 25 6 7.6758 -12.8349 0.9830 26 6 7.6597 -11.5228 0.6866 27 7 6.6164 -10.7241 1.0899 28 6 6.3842 -9.4046 0.9143 29 6 2.6137 -6.2825 1.3076 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3881 0.0002 32 1 2.6846 -3.7145 0.8894 33 1 2.6845 -3.7146 -0.8905 34 1 0.4366 -4.7622 -0.8897 35 1 0.4373 -4.7618 0.8903 36 1 0.1641 -7.2985 0.7343 37 1 0.2618 -7.1968 -1.0398 38 1 0.9014 -9.4551 -0.2651 39 1 2.2978 -8.6283 -0.9972 40 1 3.0138 -9.6866 1.0830 41 1 1.6925 -8.8931 1.9783 42 1 3.7414 -10.3664 2.6303 43 1 4.7694 -13.0841 2.6862 44 1 6.6425 -14.4715 1.9477 45 1 8.5044 -13.4469 0.6584 46 1 8.4762 -11.0920 0.1260 47 1 7.0300 -8.7167 0.3888 48 1 1.9360 -6.1707 2.1540 49 1 3.3870 -5.5156 1.3522 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714230156.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:29 Heat of formation + Delta-G solvation = 48.876293 kcal Electronic energy + Delta-G solvation = -28840.069770 eV Core-core repulsion = 24961.109955 eV Total energy + Delta-G solvation = -3878.959815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.60582 -40.09278 -37.77423 -36.73379 -35.28015 -33.73231 -33.17302 -32.09174 -30.80664 -30.23440 -28.22414 -27.40968 -26.00155 -24.26227 -23.93051 -22.62050 -22.49541 -21.99896 -20.74511 -20.03545 -19.03528 -17.94287 -17.10821 -16.86943 -16.85951 -16.13278 -15.70695 -15.46820 -15.12437 -14.89659 -14.68080 -14.60668 -14.22383 -14.01556 -13.63051 -13.53485 -13.25338 -12.99155 -12.95979 -12.78093 -12.61520 -12.31251 -12.07970 -11.99822 -11.70416 -11.33959 -11.07229 -11.04287 -10.98725 -10.80644 -10.72846 -10.49793 -10.37343 -10.15364 -9.91681 -9.81456 -9.57443 -8.90429 -8.78175 -8.56746 -7.76848 -6.82355 -5.68560 -2.96308 0.36741 0.96805 1.96521 2.24082 2.93008 3.07326 3.22916 3.49503 3.55143 3.57874 4.08026 4.29627 4.40209 4.46172 4.62211 4.65736 4.73227 4.79380 4.85687 4.91881 4.99994 5.07397 5.10896 5.24501 5.35480 5.43917 5.47173 5.52795 5.63577 5.67936 5.70128 5.73248 5.78510 5.84893 5.86852 5.91105 5.99047 6.07189 6.12999 6.28682 6.30093 6.37512 6.42128 6.48314 6.51669 6.63345 6.84958 6.97413 7.00729 7.41793 7.79939 8.20720 8.51005 9.61901 10.21037 10.55825 11.54682 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.002005 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.127671 B =13964.952903 C =14917.548554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.018 4.018 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.118 4.118 12 C -0.095 4.095 13 H 0.073 0.927 14 C -0.115 4.115 15 C -0.134 4.134 16 C 0.094 3.906 17 N -0.602 5.602 18 C 0.585 3.415 19 O -0.536 6.536 20 C -0.157 4.157 21 C -0.169 4.169 22 C 0.030 3.970 23 C -0.077 4.077 24 C -0.133 4.133 25 C -0.138 4.138 26 C 0.045 3.955 27 N -0.341 5.341 28 C 0.009 3.991 29 C 0.115 3.885 30 H 0.253 0.747 31 H 0.383 0.617 32 H 0.021 0.979 33 H 0.017 0.983 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.155 0.845 43 H 0.143 0.857 44 H 0.134 0.866 45 H 0.145 0.855 46 H 0.162 0.838 47 H 0.179 0.821 48 H 0.069 0.931 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.406 -34.362 1.949 35.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.213 4.213 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.156 4.156 12 C -0.115 4.115 13 H 0.091 0.909 14 C -0.153 4.153 15 C -0.172 4.172 16 C -0.029 4.029 17 N -0.334 5.334 18 C 0.373 3.627 19 O -0.413 6.413 20 C -0.164 4.164 21 C -0.193 4.193 22 C -0.074 4.074 23 C -0.096 4.096 24 C -0.153 4.153 25 C -0.159 4.159 26 C -0.073 4.073 27 N -0.005 5.005 28 C -0.124 4.124 29 C -0.006 4.006 30 H 0.063 0.937 31 H 0.216 0.784 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.172 0.828 43 H 0.161 0.839 44 H 0.151 0.849 45 H 0.163 0.837 46 H 0.179 0.821 47 H 0.196 0.804 48 H 0.087 0.913 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.141 -33.768 1.967 35.612 hybrid contribution 0.118 0.909 -0.080 0.920 sum 11.259 -32.859 1.887 34.785 Atomic orbital electron populations 1.69673 1.05083 1.25380 1.58326 1.24737 0.95548 0.97672 1.03340 0.86112 0.78862 0.84153 0.77111 1.20530 1.21946 1.21905 1.19319 0.91126 0.84238 1.41906 0.91128 1.42382 1.05848 1.00138 1.89441 1.20722 0.93584 0.85559 0.97877 1.21729 0.98631 0.92957 1.02328 1.21456 0.97184 0.95080 0.97771 0.90852 1.21600 0.97695 0.93614 1.02401 1.21841 0.99307 0.98291 0.97778 1.22040 0.94264 0.88909 0.97677 1.47956 1.06844 1.07930 1.70674 1.17482 0.81465 0.87268 0.76489 1.90822 1.62193 1.39540 1.48722 1.19528 0.96667 0.94007 1.06236 1.21186 1.00751 0.89925 1.07467 1.18808 0.91027 0.94234 1.03359 1.20664 0.99446 0.90000 0.99502 1.20953 0.94208 1.00522 0.99641 1.20733 1.00584 0.93436 1.01100 1.21705 0.91818 0.91665 1.02154 1.41302 1.15439 1.07887 1.35876 1.21933 0.99404 0.82716 1.08318 1.21838 0.97781 0.83588 0.97437 0.93684 0.78380 0.96095 0.96533 0.91586 0.91766 0.91690 0.91537 0.90907 0.91647 0.88288 0.91466 0.82751 0.83924 0.84854 0.83688 0.82063 0.80360 0.91287 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.23 13.06 55.49 0.72 -28.50 16 2 C -0.02 -0.53 5.50 -17.44 -0.10 -0.62 16 3 Si 0.91 23.33 29.55 -169.99 -5.02 18.31 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 7 C -0.23 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 2.05 7.83 -52.48 -0.41 1.63 16 9 N -0.73 -19.63 5.60 -59.90 -0.34 -19.96 16 10 C 0.15 3.21 6.02 -4.04 -0.02 3.18 16 11 C -0.12 -1.95 4.80 -26.73 -0.13 -2.08 16 12 C -0.10 -1.29 2.34 -90.50 -0.21 -1.50 16 13 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 14 C -0.12 -1.23 5.17 -26.69 -0.14 -1.37 16 15 C -0.13 -1.20 6.07 -26.83 -0.16 -1.36 16 16 C 0.09 0.87 5.68 -3.93 -0.02 0.84 16 17 N -0.60 -7.67 2.98 -174.27 -0.52 -8.19 16 18 C 0.59 8.53 7.59 -12.48 -0.09 8.43 16 19 O -0.54 -9.98 16.52 5.28 0.09 -9.90 16 20 C -0.16 -1.85 5.33 -105.07 -0.56 -2.41 16 21 C -0.17 -1.60 8.50 -38.55 -0.33 -1.93 16 22 C 0.03 0.27 6.70 -84.01 -0.56 -0.30 16 23 C -0.08 -0.49 10.11 -39.28 -0.40 -0.89 16 24 C -0.13 -0.69 10.07 -39.50 -0.40 -1.08 16 25 C -0.14 -0.68 9.97 -39.91 -0.40 -1.07 16 26 C 0.04 0.28 10.89 -16.35 -0.18 0.10 16 27 N -0.34 -3.05 2.92 -60.42 -0.18 -3.23 16 28 C 0.01 0.10 11.56 -16.17 -0.19 -0.09 16 29 C 0.12 1.65 5.32 -3.71 -0.02 1.63 16 30 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 32 H 0.02 0.46 6.70 -51.93 -0.35 0.12 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.82 4.16 -51.93 -0.22 0.60 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.15 1.16 7.13 -52.49 -0.37 0.78 16 43 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 45 H 0.15 0.31 8.06 -52.49 -0.42 -0.12 16 46 H 0.16 0.56 8.06 -52.48 -0.42 0.13 16 47 H 0.18 1.61 8.06 -52.48 -0.42 1.19 16 48 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.10 1.71 5.74 -51.93 -0.30 1.41 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -36.38 392.79 -10.82 -47.20 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.44 Total: 5.95 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -4.06 Total: -7.60 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.31 Total: -59.88 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.38 -10.82 -47.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714230156.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.075 kcal (2) G-P(sol) polarization free energy of solvation -36.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds