Wall clock time and date at job start Wed Apr 1 2020 01:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00088 * 2 1 4 4 H 1.48499 * 109.47032 * 269.99319 * 3 2 1 5 5 H 1.48493 * 109.47257 * 29.99025 * 3 2 1 6 6 H 1.48501 * 109.47255 * 149.99229 * 3 2 1 7 7 C 1.38815 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99683 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00133 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00089 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47498 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47158 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.49868 * 54.93343 * 12 11 10 14 14 C 1.53041 * 109.49413 * 174.99693 * 12 11 10 15 15 C 1.53039 * 109.52377 * 181.35306 * 14 12 11 16 16 C 1.53199 * 109.31291 * 298.61420 * 15 14 12 17 17 N 1.46924 * 108.76428 * 54.65964 * 16 15 14 18 18 C 1.34768 * 120.63322 * 126.35977 * 17 16 15 19 19 O 1.21596 * 120.00253 * 176.31236 * 18 17 16 20 20 C 1.47501 * 119.99931 * 356.31076 * 18 17 16 21 21 C 1.41200 * 126.37049 * 43.13947 * 20 18 17 22 22 C 1.37994 * 106.86421 * 179.97438 * 21 20 18 23 23 C 1.41385 * 131.98318 * 179.97438 * 22 21 20 24 24 C 1.35740 * 119.33351 * 179.97438 * 23 22 21 25 25 C 1.40825 * 119.71887 * 0.02562 * 24 23 22 26 26 C 1.34535 * 120.58449 * 359.97438 * 25 24 23 27 27 N 1.37433 * 120.74223 * 359.97438 * 26 25 24 28 28 C 1.35137 * 131.28975 * 180.33819 * 27 26 25 29 29 C 1.46928 * 118.73483 * 306.38103 * 17 16 15 30 30 H 0.97001 * 120.00025 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00351 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47606 * 59.99546 * 10 9 7 33 33 H 1.09000 * 109.46998 * 299.99665 * 10 9 7 34 34 H 1.08997 * 109.46780 * 59.99772 * 11 10 9 35 35 H 1.09000 * 109.46669 * 299.99801 * 11 10 9 36 36 H 1.08993 * 109.46505 * 301.37010 * 14 12 11 37 37 H 1.09006 * 109.45832 * 61.34328 * 14 12 11 38 38 H 1.08990 * 109.50079 * 58.58297 * 15 14 12 39 39 H 1.09007 * 109.49557 * 178.67784 * 15 14 12 40 40 H 1.09000 * 109.59958 * 294.86439 * 16 15 14 41 41 H 1.08996 * 109.69785 * 174.50969 * 16 15 14 42 42 H 1.08002 * 126.57026 * 359.93535 * 21 20 18 43 43 H 1.08007 * 120.33557 * 359.97438 * 23 22 21 44 44 H 1.08001 * 120.13895 * 180.02562 * 24 23 22 45 45 H 1.08004 * 119.70453 * 180.02562 * 25 24 23 46 46 H 1.08004 * 119.63021 * 180.02562 * 26 25 24 47 47 H 1.08003 * 125.60890 * 359.95499 * 28 27 26 48 48 H 1.09001 * 109.58839 * 293.82313 * 29 17 16 49 49 H 1.09004 * 109.58505 * 173.39427 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6998 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 -0.0001 12 6 1.8288 -6.1448 0.0005 13 1 2.5213 -6.1646 0.8420 14 6 0.8394 -7.3057 0.1257 15 6 1.6062 -8.6296 0.1604 16 6 2.3858 -8.7980 -1.1476 17 7 3.2338 -7.6150 -1.3480 18 6 4.5576 -7.7475 -1.5630 19 8 5.2373 -6.7661 -1.7941 20 6 5.1821 -9.0831 -1.5181 21 6 4.6659 -10.2682 -2.0862 22 6 5.5697 -11.2728 -1.8065 23 6 5.5788 -12.6513 -2.1209 24 6 6.6191 -13.4202 -1.7097 25 6 7.6716 -12.8374 -0.9778 26 6 7.6555 -11.5249 -0.6827 27 7 6.6135 -10.7262 -1.0891 28 6 6.3840 -9.4052 -0.9202 29 6 2.6111 -6.2848 -1.3091 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6847 -3.7146 0.8905 33 1 2.6846 -3.7146 -0.8895 34 1 0.4375 -4.7618 -0.8903 35 1 0.4368 -4.7622 0.8897 36 1 0.2641 -7.1951 1.0448 37 1 0.1630 -7.3000 -0.7291 38 1 2.3008 -8.6259 1.0002 39 1 0.9027 -9.4546 0.2731 40 1 1.6880 -8.8927 -1.9796 41 1 3.0101 -9.6897 -1.0911 42 1 3.7407 -10.3693 -2.6341 43 1 4.7662 -13.0881 -2.6825 44 1 6.6396 -14.4745 -1.9430 45 1 8.4994 -13.4494 -0.6511 46 1 8.4709 -11.0939 -0.1208 47 1 7.0320 -8.7160 -0.3991 48 1 1.9317 -6.1745 -2.1542 49 1 3.3843 -5.5179 -1.3565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714230157.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:31 Heat of formation + Delta-G solvation = 27.666433 kcal Electronic energy + Delta-G solvation = -28839.115632 eV Core-core repulsion = 24959.236089 eV Total energy + Delta-G solvation = -3879.879543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.23165 -41.11734 -38.88571 -37.34270 -36.95300 -35.06258 -34.00312 -33.35065 -32.33007 -31.08994 -29.08852 -28.66138 -26.96717 -25.90626 -24.64899 -24.05076 -23.25969 -22.73298 -22.10826 -21.14476 -19.93348 -19.15495 -18.55012 -17.85582 -17.55476 -16.96913 -16.73779 -16.44089 -16.20285 -15.98972 -15.71239 -15.49920 -15.32133 -15.25707 -15.07874 -14.82594 -14.54046 -14.26587 -13.98902 -13.86948 -13.50659 -13.30915 -12.98731 -12.87305 -12.78114 -12.59871 -12.42957 -12.33414 -12.18619 -12.13605 -11.94629 -11.89120 -11.74707 -11.57927 -11.37090 -11.19603 -10.94909 -10.91772 -9.74816 -9.48163 -9.03264 -8.33565 -7.98321 -5.27555 -0.12805 0.39250 1.14348 1.44108 1.46750 1.55395 1.59494 1.99848 2.26484 2.53538 2.60350 3.34273 3.50856 3.64086 3.67427 3.85161 3.89505 3.91667 4.04316 4.10591 4.12637 4.17922 4.30873 4.32755 4.36420 4.45274 4.51662 4.59087 4.60951 4.69446 4.72827 4.84736 4.88591 4.91960 4.92726 4.93921 5.06559 5.13705 5.23538 5.26192 5.32117 5.33200 5.38152 5.43485 5.45372 5.51274 5.54755 5.68735 5.91597 6.24615 6.26640 6.40971 7.12702 7.30360 8.05461 8.31051 9.25033 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.002004 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.211525 B =13967.964357 C =14918.685884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.252 4.252 8 H 0.068 0.932 9 N -0.745 5.745 10 C 0.149 3.851 11 C -0.103 4.103 12 C -0.083 4.083 13 H 0.061 0.939 14 C -0.111 4.111 15 C -0.127 4.127 16 C 0.089 3.911 17 N -0.598 5.598 18 C 0.579 3.421 19 O -0.593 6.593 20 C -0.180 4.180 21 C -0.179 4.179 22 C 0.026 3.974 23 C -0.094 4.094 24 C -0.125 4.125 25 C -0.129 4.129 26 C 0.019 3.981 27 N -0.342 5.342 28 C -0.011 4.011 29 C 0.117 3.883 30 H 0.253 0.747 31 H 0.376 0.624 32 H 0.009 0.991 33 H 0.013 0.987 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.172 0.828 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.178 0.822 46 H 0.182 0.818 47 H 0.179 0.821 48 H 0.076 0.924 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.602 -37.986 -1.893 39.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.388 5.388 10 C 0.023 3.977 11 C -0.142 4.142 12 C -0.103 4.103 13 H 0.079 0.921 14 C -0.148 4.148 15 C -0.165 4.165 16 C -0.032 4.032 17 N -0.328 5.328 18 C 0.369 3.631 19 O -0.475 6.475 20 C -0.188 4.188 21 C -0.202 4.202 22 C -0.079 4.079 23 C -0.112 4.112 24 C -0.145 4.145 25 C -0.149 4.149 26 C -0.098 4.098 27 N -0.005 5.005 28 C -0.145 4.145 29 C -0.005 4.005 30 H 0.062 0.938 31 H 0.208 0.792 32 H 0.027 0.973 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.130 0.870 42 H 0.189 0.811 43 H 0.184 0.816 44 H 0.182 0.818 45 H 0.195 0.805 46 H 0.199 0.801 47 H 0.196 0.804 48 H 0.094 0.906 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.326 -37.452 -1.886 39.173 hybrid contribution 0.165 1.847 0.054 1.855 sum 11.491 -35.605 -1.831 37.458 Atomic orbital electron populations 1.69810 1.06461 1.26207 1.59234 1.25596 0.96553 1.01109 1.03434 0.85113 0.77633 0.79295 0.77562 1.21243 1.21506 1.19764 1.19619 0.91337 0.85667 1.41728 0.91355 1.42564 1.05671 1.01188 1.89408 1.20851 0.94416 0.85527 0.96899 1.21587 0.97573 0.92429 1.02572 1.21325 0.97357 0.94902 0.96743 0.92077 1.21581 0.97057 0.92910 1.03292 1.21893 0.99425 0.98198 0.96947 1.22431 0.94294 0.87753 0.98677 1.48042 1.06816 1.08365 1.69625 1.18002 0.81758 0.87851 0.75481 1.90774 1.63563 1.41617 1.51529 1.19348 0.97684 0.93221 1.08511 1.21315 1.01796 0.89125 1.07947 1.19231 0.90720 0.95312 1.02658 1.21009 1.00970 0.88816 1.00430 1.21440 0.93224 1.01934 0.97885 1.21253 1.01176 0.93019 0.99420 1.22296 0.92009 0.92335 1.03154 1.41451 1.16208 1.07346 1.35522 1.21933 0.99375 0.83759 1.09394 1.21655 0.96819 0.83909 0.98166 0.93815 0.79219 0.97301 0.96902 0.91428 0.91267 0.90766 0.90573 0.92555 0.87726 0.89464 0.86959 0.81107 0.81635 0.81844 0.80453 0.80055 0.80377 0.90611 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.27 13.06 21.65 0.28 -60.99 16 2 C -0.07 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.98 48.56 29.55 68.60 2.03 50.59 16 4 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.25 -15.21 9.99 84.04 0.84 -14.37 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.75 -41.11 5.60 -343.44 -1.92 -43.04 16 10 C 0.15 6.68 6.02 86.38 0.52 7.20 16 11 C -0.10 -3.47 4.80 30.60 0.15 -3.33 16 12 C -0.08 -2.28 2.33 -10.72 -0.03 -2.31 16 13 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 14 C -0.11 -2.16 5.17 30.62 0.16 -2.00 16 15 C -0.13 -1.97 6.08 30.67 0.19 -1.78 16 16 C 0.09 1.51 5.72 86.37 0.49 2.01 16 17 N -0.60 -15.66 2.97 -822.70 -2.44 -18.10 16 18 C 0.58 18.05 7.59 86.69 0.66 18.71 16 19 O -0.59 -24.23 16.52 -4.02 -0.07 -24.30 16 20 C -0.18 -4.42 5.33 -20.15 -0.11 -4.53 16 21 C -0.18 -3.27 8.51 22.94 0.20 -3.08 16 22 C 0.03 0.43 6.70 38.90 0.26 0.69 16 23 C -0.09 -0.92 10.11 22.47 0.23 -0.69 16 24 C -0.12 -0.80 10.07 22.32 0.22 -0.58 16 25 C -0.13 -0.81 9.97 22.05 0.22 -0.59 16 26 C 0.02 0.20 10.89 82.97 0.90 1.11 16 27 N -0.34 -5.89 2.92 -345.06 -1.01 -6.90 16 28 C -0.01 -0.25 11.56 84.14 0.97 0.73 16 29 C 0.12 3.50 5.32 86.36 0.46 3.96 16 30 H 0.25 15.41 8.31 -92.71 -0.77 14.63 16 31 H 0.38 21.43 7.67 -92.71 -0.71 20.72 16 32 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.01 0.61 6.70 -2.39 -0.02 0.59 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 41 H 0.11 1.68 4.14 -2.39 -0.01 1.67 16 42 H 0.17 2.31 7.13 -2.91 -0.02 2.29 16 43 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 44 H 0.16 0.08 8.06 -2.91 -0.02 0.05 16 45 H 0.18 -0.07 8.06 -2.91 -0.02 -0.10 16 46 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 47 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 48 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.06 2.33 5.75 -2.39 -0.01 2.32 16 Total: -1.00 -82.38 392.85 3.91 -78.47 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.24 Total: 27.17 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 6.80 Total: -2.91 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -5.09 Total: -129.03 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.07 Total: -24.30 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal Total: -82.38 3.91 -78.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714230157.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.135 kcal (2) G-P(sol) polarization free energy of solvation -82.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds