Wall clock time and date at job start Wed Apr 1 2020 00:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86797 * 120.00050 * 2 1 4 4 H 1.48499 * 109.46913 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47236 * 300.00295 * 3 2 1 6 6 H 1.48503 * 109.47101 * 59.99938 * 3 2 1 7 7 C 1.38947 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00120 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00164 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99927 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00031 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00002 * 180.02562 * 13 12 10 15 15 C 1.50693 * 109.47232 * 180.02562 * 14 13 12 16 16 C 1.30999 * 120.00369 * 124.99626 * 15 14 13 17 17 C 1.50700 * 120.00207 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.46769 * 125.00304 * 17 16 15 19 19 C 1.34777 * 119.99828 * 179.72341 * 18 17 16 20 20 O 1.21283 * 120.00222 * 0.28168 * 19 18 17 21 21 C 1.50703 * 120.00290 * 180.27728 * 19 18 17 22 22 C 1.53007 * 109.47063 * 300.00464 * 21 19 18 23 23 C 1.52995 * 109.46927 * 179.97438 * 22 21 19 24 24 C 1.52990 * 109.47353 * 59.99689 * 23 22 21 25 25 F 1.39907 * 109.46934 * 60.00016 * 24 23 22 26 26 C 1.52999 * 109.47464 * 300.00249 * 24 23 22 27 27 C 1.52990 * 109.47398 * 180.02562 * 21 19 18 28 28 H 0.97009 * 119.99826 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99944 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47049 * 60.00444 * 12 10 9 31 31 H 1.08997 * 109.47125 * 300.00566 * 12 10 9 32 32 H 1.00895 * 110.99574 * 303.95591 * 13 12 10 33 33 H 1.08998 * 109.47162 * 59.99644 * 14 13 12 34 34 H 1.09003 * 109.47060 * 300.00354 * 14 13 12 35 35 H 1.08008 * 119.99903 * 305.00322 * 15 14 13 36 36 H 1.08001 * 119.99918 * 0.02562 * 16 15 14 37 37 H 1.09004 * 109.47210 * 5.00662 * 17 16 15 38 38 H 1.08994 * 109.47121 * 245.00632 * 17 16 15 39 39 H 0.97001 * 120.00384 * 0.02562 * 18 17 16 40 40 H 1.09002 * 109.46946 * 59.99717 * 21 19 18 41 41 H 1.09003 * 109.46582 * 300.00001 * 22 21 19 42 42 H 1.09001 * 109.46852 * 59.99630 * 22 21 19 43 43 H 1.09002 * 109.47128 * 299.99281 * 23 22 21 44 44 H 1.08998 * 109.46818 * 180.02562 * 23 22 21 45 45 H 1.09007 * 109.47253 * 179.97438 * 24 23 22 46 46 H 1.09003 * 109.46364 * 299.99483 * 26 24 23 47 47 H 1.09001 * 109.47411 * 180.02562 * 26 24 23 48 48 H 1.08998 * 109.47508 * 300.00200 * 27 21 19 49 49 H 1.09011 * 109.47182 * 60.00188 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0022 12 6 1.2436 -4.8630 -0.0032 13 7 2.1982 -5.9796 -0.0037 14 6 1.4978 -7.2709 -0.0049 15 6 2.5072 -8.3898 -0.0048 16 6 2.4622 -9.3125 0.9240 17 6 3.4713 -10.4317 0.9238 18 7 4.1486 -10.4787 2.2220 19 6 5.0945 -11.4101 2.4553 20 8 5.3885 -12.2061 1.5887 21 6 5.7868 -11.4625 3.7928 22 6 6.5040 -10.1353 4.0482 23 6 7.2064 -10.1883 5.4064 24 6 8.2268 -11.3282 5.4087 25 9 9.1736 -11.1085 4.4023 26 6 7.5097 -12.6553 5.1533 27 6 6.8078 -12.6019 3.7943 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3907 -0.0016 30 1 0.6167 -4.9201 -0.8930 31 1 0.6172 -4.9212 0.8869 32 1 2.8330 -5.9121 -0.7850 33 1 0.8732 -7.3446 -0.8951 34 1 0.8726 -7.3459 0.8848 35 1 3.2679 -8.4309 -0.7704 36 1 1.7014 -9.2715 1.6895 37 1 4.2056 -10.2588 0.1370 38 1 2.9631 -11.3791 0.7446 39 1 3.9133 -9.8424 2.9152 40 1 5.0495 -11.6338 4.5771 41 1 7.2413 -9.9640 3.2638 42 1 5.7768 -9.3233 4.0469 43 1 6.4687 -10.3594 6.1904 44 1 7.7169 -9.2427 5.5885 45 1 8.7275 -11.3656 6.3762 46 1 6.7721 -12.8264 5.9374 47 1 8.2367 -13.4675 5.1554 48 1 6.2973 -13.5476 3.6122 49 1 7.5452 -12.4302 3.0100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715867113.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:52 Heat of formation + Delta-G solvation = -130.287456 kcal Electronic energy + Delta-G solvation = -28244.968124 eV Core-core repulsion = 23927.469961 eV Total energy + Delta-G solvation = -4317.498163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.97267 -40.36114 -38.36136 -37.59202 -36.68025 -35.25670 -33.93261 -32.94097 -31.34317 -31.24746 -31.11973 -28.46055 -26.20618 -24.52297 -23.68377 -23.20068 -22.44568 -20.92396 -20.27525 -19.77382 -19.14074 -17.90235 -17.61071 -16.77531 -16.46142 -16.25882 -15.96343 -15.73744 -15.56521 -15.18326 -14.89251 -14.48313 -14.45871 -14.08737 -13.88621 -13.82866 -13.63939 -13.61720 -13.21878 -13.00754 -12.69441 -12.55104 -12.46394 -12.22969 -12.19930 -11.79820 -11.60202 -11.55661 -11.52916 -11.21643 -11.15855 -11.07565 -10.86916 -10.52506 -10.35790 -10.24557 -10.08665 -9.56629 -9.53747 -9.20554 -8.49469 -8.08588 -7.98096 -6.43863 -3.84704 1.82045 2.38742 3.07891 3.14950 3.25730 3.33139 3.88361 4.01416 4.06619 4.10135 4.19419 4.32926 4.34363 4.50250 4.59183 4.63762 4.74465 4.80572 4.83702 4.92261 4.95501 5.09785 5.21338 5.23566 5.26149 5.33372 5.36423 5.42813 5.46880 5.48353 5.50095 5.64321 5.67076 5.74631 5.76594 5.79078 5.93274 5.97390 6.12263 6.22934 6.41147 6.56902 7.13985 7.24093 7.53593 7.59284 7.96851 8.04441 8.58946 9.15916 9.51991 10.03304 10.73886 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013192 B = 0.001599 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.911824 B =17505.612915 C =19193.567378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.665 5.665 14 C 0.082 3.918 15 C -0.110 4.110 16 C -0.184 4.184 17 C 0.152 3.848 18 N -0.725 5.725 19 C 0.517 3.483 20 O -0.541 6.541 21 C -0.107 4.107 22 C -0.114 4.114 23 C -0.144 4.144 24 C 0.089 3.911 25 F -0.211 7.211 26 C -0.146 4.146 27 C -0.101 4.101 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.350 0.650 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.403 0.597 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.127 -25.368 10.781 28.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.083 4.083 13 N -0.298 5.298 14 C -0.047 4.047 15 C -0.129 4.129 16 C -0.203 4.203 17 C 0.029 3.971 18 N -0.377 5.377 19 C 0.303 3.697 20 O -0.418 6.418 21 C -0.128 4.128 22 C -0.152 4.152 23 C -0.182 4.182 24 C 0.053 3.947 25 F -0.192 7.192 26 C -0.183 4.183 27 C -0.139 4.139 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.170 0.830 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.238 0.762 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.130 -25.752 10.788 28.816 hybrid contribution -0.822 1.237 -0.618 1.609 sum 6.307 -24.515 10.170 27.280 Atomic orbital electron populations 1.69624 1.05941 1.28065 1.50670 1.25270 0.95648 0.99750 0.97315 0.85794 0.79725 0.81085 0.77707 1.19200 1.20763 1.20731 1.19762 0.93421 0.82211 1.47478 0.87844 1.41869 1.09207 1.04608 1.64349 1.19794 0.88388 0.84711 0.84539 1.90528 1.13755 1.87050 1.55365 1.21692 0.94342 0.90954 1.01274 1.60134 1.18722 0.99469 1.51432 1.21087 0.94458 0.88182 1.00975 1.22884 0.98312 0.93589 0.98159 1.22730 1.00227 0.96883 1.00504 1.20301 0.93625 0.97650 0.85478 1.46047 1.39976 1.34841 1.16808 1.20633 0.79182 0.80216 0.89650 1.90705 1.64010 1.40332 1.46751 1.21379 0.98379 0.97846 0.95175 1.21522 1.00184 0.95520 0.97983 1.22128 0.98633 0.99035 0.98413 1.21592 0.87825 0.96003 0.89323 1.92820 1.66709 1.95956 1.63728 1.22171 1.00502 0.96886 0.98786 1.21320 0.97707 0.97747 0.97104 0.91919 0.77456 0.93776 0.89557 0.83025 0.94286 0.90510 0.86947 0.86584 0.91120 0.90943 0.76210 0.88379 0.90501 0.90574 0.89813 0.90128 0.89915 0.90033 0.90412 0.90722 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.19 5.29 -10.96 -0.06 -14.24 16 10 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16 11 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 12 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 13 N -0.67 -10.43 6.11 -116.34 -0.71 -11.14 16 14 C 0.08 0.94 6.12 -4.98 -0.03 0.91 16 15 C -0.11 -1.11 9.38 -36.03 -0.34 -1.45 16 16 C -0.18 -1.61 9.24 -36.03 -0.33 -1.94 16 17 C 0.15 1.40 6.11 -5.19 -0.03 1.37 16 18 N -0.72 -6.18 5.44 -61.47 -0.33 -6.52 16 19 C 0.52 5.21 7.15 -10.98 -0.08 5.13 16 20 O -0.54 -7.59 15.98 5.55 0.09 -7.50 16 21 C -0.11 -0.75 2.53 -91.77 -0.23 -0.98 16 22 C -0.11 -0.78 4.98 -26.73 -0.13 -0.91 16 23 C -0.14 -0.77 5.72 -26.74 -0.15 -0.93 16 24 C 0.09 0.54 4.12 -26.74 -0.11 0.43 16 25 F -0.21 -2.03 16.04 2.25 0.04 -1.99 16 26 C -0.15 -0.78 5.72 -26.71 -0.15 -0.93 16 27 C -0.10 -0.77 4.37 -26.71 -0.12 -0.89 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.35 5.70 8.42 -39.29 -0.33 5.37 16 33 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.82 7.79 -51.93 -0.40 0.42 16 35 H 0.11 1.12 7.84 -52.48 -0.41 0.71 16 36 H 0.12 0.90 7.84 -52.49 -0.41 0.48 16 37 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.40 2.63 7.88 -40.82 -0.32 2.31 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.69 7.80 -51.93 -0.41 0.29 16 42 H 0.08 0.46 7.56 -51.93 -0.39 0.06 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 49 H 0.08 0.77 7.76 -51.92 -0.40 0.37 16 LS Contribution 406.77 15.07 6.13 6.13 Total: -1.00 -34.10 406.77 -9.09 -43.19 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.97 Total: 12.65 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -2.07 Total: 2.87 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.38 Total: -55.54 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.18 Total: -23.23 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.10 -9.09 -43.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715867113.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.094 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds