Wall clock time and date at job start Wed Apr 1 2020 00:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86797 * 120.00050 * 2 1 4 4 H 1.48499 * 109.46913 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47236 * 300.00295 * 3 2 1 6 6 H 1.48503 * 109.47101 * 59.99938 * 3 2 1 7 7 C 1.38947 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00120 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00164 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99927 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00031 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00002 * 180.02562 * 13 12 10 15 15 C 1.50693 * 109.47232 * 180.02562 * 14 13 12 16 16 C 1.30999 * 120.00369 * 124.99626 * 15 14 13 17 17 C 1.50700 * 120.00207 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.46769 * 125.00304 * 17 16 15 19 19 C 1.34777 * 119.99828 * 179.72341 * 18 17 16 20 20 O 1.21283 * 120.00222 * 0.28168 * 19 18 17 21 21 C 1.50703 * 120.00290 * 180.27728 * 19 18 17 22 22 C 1.53007 * 109.47063 * 300.00464 * 21 19 18 23 23 C 1.52995 * 109.46927 * 179.97438 * 22 21 19 24 24 C 1.52990 * 109.47353 * 59.99689 * 23 22 21 25 25 F 1.39907 * 109.46934 * 60.00016 * 24 23 22 26 26 C 1.52999 * 109.47464 * 300.00249 * 24 23 22 27 27 C 1.52990 * 109.47398 * 180.02562 * 21 19 18 28 28 H 0.97009 * 119.99826 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99944 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47049 * 60.00444 * 12 10 9 31 31 H 1.08997 * 109.47125 * 300.00566 * 12 10 9 32 32 H 1.00895 * 110.99574 * 303.95591 * 13 12 10 33 33 H 1.08998 * 109.47162 * 59.99644 * 14 13 12 34 34 H 1.09003 * 109.47060 * 300.00354 * 14 13 12 35 35 H 1.08008 * 119.99903 * 305.00322 * 15 14 13 36 36 H 1.08001 * 119.99918 * 0.02562 * 16 15 14 37 37 H 1.09004 * 109.47210 * 5.00662 * 17 16 15 38 38 H 1.08994 * 109.47121 * 245.00632 * 17 16 15 39 39 H 0.97001 * 120.00384 * 0.02562 * 18 17 16 40 40 H 1.09002 * 109.46946 * 59.99717 * 21 19 18 41 41 H 1.09003 * 109.46582 * 300.00001 * 22 21 19 42 42 H 1.09001 * 109.46852 * 59.99630 * 22 21 19 43 43 H 1.09002 * 109.47128 * 299.99281 * 23 22 21 44 44 H 1.08998 * 109.46818 * 180.02562 * 23 22 21 45 45 H 1.09007 * 109.47253 * 179.97438 * 24 23 22 46 46 H 1.09003 * 109.46364 * 299.99483 * 26 24 23 47 47 H 1.09001 * 109.47411 * 180.02562 * 26 24 23 48 48 H 1.08998 * 109.47508 * 300.00200 * 27 21 19 49 49 H 1.09011 * 109.47182 * 60.00188 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0022 12 6 1.2436 -4.8630 -0.0032 13 7 2.1982 -5.9796 -0.0037 14 6 1.4978 -7.2709 -0.0049 15 6 2.5072 -8.3898 -0.0048 16 6 2.4622 -9.3125 0.9240 17 6 3.4713 -10.4317 0.9238 18 7 4.1486 -10.4787 2.2220 19 6 5.0945 -11.4101 2.4553 20 8 5.3885 -12.2061 1.5887 21 6 5.7868 -11.4625 3.7928 22 6 6.5040 -10.1353 4.0482 23 6 7.2064 -10.1883 5.4064 24 6 8.2268 -11.3282 5.4087 25 9 9.1736 -11.1085 4.4023 26 6 7.5097 -12.6553 5.1533 27 6 6.8078 -12.6019 3.7943 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3907 -0.0016 30 1 0.6167 -4.9201 -0.8930 31 1 0.6172 -4.9212 0.8869 32 1 2.8330 -5.9121 -0.7850 33 1 0.8732 -7.3446 -0.8951 34 1 0.8726 -7.3459 0.8848 35 1 3.2679 -8.4309 -0.7704 36 1 1.7014 -9.2715 1.6895 37 1 4.2056 -10.2588 0.1370 38 1 2.9631 -11.3791 0.7446 39 1 3.9133 -9.8424 2.9152 40 1 5.0495 -11.6338 4.5771 41 1 7.2413 -9.9640 3.2638 42 1 5.7768 -9.3233 4.0469 43 1 6.4687 -10.3594 6.1904 44 1 7.7169 -9.2427 5.5885 45 1 8.7275 -11.3656 6.3762 46 1 6.7721 -12.8264 5.9374 47 1 8.2367 -13.4675 5.1554 48 1 6.2973 -13.5476 3.6122 49 1 7.5452 -12.4302 3.0100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715867113.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:50 Heat of formation + Delta-G solvation = -155.171027 kcal Electronic energy + Delta-G solvation = -28246.047157 eV Core-core repulsion = 23927.469961 eV Total energy + Delta-G solvation = -4318.577195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.57680 -41.12594 -40.16231 -38.23423 -37.66058 -36.35318 -35.82064 -33.91805 -33.24208 -31.85033 -31.72274 -29.57792 -27.58250 -25.97054 -24.55395 -23.77417 -23.33185 -21.66176 -21.25729 -20.75820 -20.33563 -19.86557 -18.29628 -17.89309 -17.38104 -17.06058 -17.00873 -16.68398 -16.46622 -16.26299 -16.03004 -15.93367 -15.56427 -15.29792 -15.12882 -14.79676 -14.64027 -14.39264 -14.16662 -14.02323 -13.60202 -13.53443 -13.26185 -13.20151 -13.07921 -12.92398 -12.87875 -12.81050 -12.69107 -12.40917 -12.12050 -12.04414 -12.03040 -11.74504 -11.51881 -11.41926 -11.02732 -10.85550 -10.37145 -10.35462 -10.02852 -10.00469 -9.27651 -8.47224 -5.95890 1.04344 1.36555 1.42204 1.56256 1.59991 2.04916 2.29421 2.37098 3.01057 3.20172 3.50516 3.56844 3.58218 3.69548 3.76663 3.89138 4.00269 4.06497 4.10680 4.20877 4.30329 4.31878 4.40297 4.44239 4.47386 4.48674 4.54847 4.57354 4.66239 4.68613 4.76265 4.86002 4.89116 5.00137 5.05584 5.14375 5.22881 5.25390 5.35148 5.41046 5.45928 5.65881 5.76316 5.89726 6.09878 6.36258 6.53450 6.59854 7.12498 7.22314 7.56017 8.11478 8.70261 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013192 B = 0.001599 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.911824 B =17505.612915 C =19193.567378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.682 5.682 14 C 0.087 3.913 15 C -0.127 4.127 16 C -0.161 4.161 17 C 0.152 3.848 18 N -0.715 5.715 19 C 0.511 3.489 20 O -0.588 6.588 21 C -0.098 4.098 22 C -0.113 4.113 23 C -0.140 4.140 24 C 0.076 3.924 25 F -0.237 7.237 26 C -0.139 4.139 27 C -0.101 4.101 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.343 0.657 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.136 0.864 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.416 0.584 40 H 0.133 0.867 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.627 -25.590 12.831 28.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.512 6.512 12 C -0.067 4.067 13 N -0.314 5.314 14 C -0.041 4.041 15 C -0.147 4.147 16 C -0.180 4.180 17 C 0.029 3.971 18 N -0.367 5.367 19 C 0.299 3.701 20 O -0.469 6.469 21 C -0.119 4.119 22 C -0.151 4.151 23 C -0.178 4.178 24 C 0.041 3.959 25 F -0.219 7.219 26 C -0.176 4.176 27 C -0.139 4.139 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.161 0.839 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.154 0.846 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.253 0.747 40 H 0.151 0.849 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.130 0.870 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.582 -25.969 12.859 29.511 hybrid contribution -0.349 1.226 -1.268 1.798 sum 5.233 -24.744 11.591 27.820 Atomic orbital electron populations 1.69677 1.06772 1.29239 1.50330 1.26029 0.96559 1.02372 0.96270 0.84876 0.78000 0.77136 0.78350 1.19900 1.19612 1.19532 1.19700 0.92694 0.84085 1.49908 0.90412 1.41934 1.09362 1.04691 1.65014 1.20927 0.88258 0.86256 0.82174 1.90496 1.15983 1.87993 1.56690 1.21555 0.93958 0.87885 1.03348 1.60147 1.19060 1.00753 1.51420 1.21126 0.94608 0.86168 1.02199 1.22806 0.98724 0.94114 0.99050 1.22763 0.99691 0.95592 0.99977 1.20245 0.93446 0.98000 0.85456 1.45985 1.39320 1.34584 1.16819 1.21251 0.78968 0.79558 0.90344 1.90683 1.65457 1.42277 1.48444 1.21401 0.98618 0.97679 0.94171 1.21507 0.99774 0.95643 0.98172 1.22151 0.98915 0.98695 0.98031 1.21960 0.87843 0.96590 0.89542 1.92772 1.67878 1.96136 1.65087 1.22163 1.00923 0.96607 0.97935 1.21280 0.97203 0.97748 0.97687 0.91284 0.76891 0.91398 0.87418 0.83851 0.93027 0.89135 0.87515 0.84625 0.92831 0.90794 0.74740 0.84924 0.93679 0.89457 0.86777 0.90343 0.87541 0.87040 0.90391 0.91296 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 3 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.33 -18.93 9.68 84.04 0.81 -18.11 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -29.07 5.29 -306.99 -1.62 -30.69 16 10 C 0.44 20.50 7.82 87.66 0.69 21.19 16 11 O -0.63 -34.64 15.78 -3.06 -0.05 -34.68 16 12 C 0.06 2.12 6.17 85.56 0.53 2.65 16 13 N -0.68 -20.47 6.11 -521.99 -3.19 -23.66 16 14 C 0.09 1.79 6.12 85.56 0.52 2.31 16 15 C -0.13 -2.40 9.38 25.65 0.24 -2.16 16 16 C -0.16 -2.50 9.24 25.65 0.24 -2.26 16 17 C 0.15 2.69 6.11 85.63 0.52 3.21 16 18 N -0.72 -11.45 5.44 -466.79 -2.54 -13.99 16 19 C 0.51 10.23 7.15 87.66 0.63 10.86 16 20 O -0.59 -17.23 15.98 -3.04 -0.05 -17.28 16 21 C -0.10 -1.26 2.53 -11.54 -0.03 -1.29 16 22 C -0.11 -1.43 4.98 30.60 0.15 -1.28 16 23 C -0.14 -1.20 5.72 30.59 0.17 -1.02 16 24 C 0.08 0.81 4.12 30.59 0.13 0.94 16 25 F -0.24 -4.69 16.04 44.97 0.72 -3.97 16 26 C -0.14 -1.25 5.72 30.61 0.18 -1.08 16 27 C -0.10 -1.54 4.37 30.61 0.13 -1.41 16 28 H 0.28 13.82 8.31 -92.70 -0.77 13.05 16 29 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.34 11.08 8.42 -89.70 -0.76 10.32 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.63 7.79 -2.39 -0.02 1.61 16 35 H 0.11 2.12 7.84 -2.91 -0.02 2.10 16 36 H 0.14 1.62 7.84 -2.91 -0.02 1.60 16 37 H 0.05 1.15 7.79 -2.38 -0.02 1.13 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.42 4.52 7.88 -92.71 -0.73 3.79 16 40 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.04 0.86 7.80 -2.39 -0.02 0.84 16 42 H 0.09 0.89 7.56 -2.39 -0.02 0.87 16 43 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 49 H 0.04 0.93 7.76 -2.38 -0.02 0.92 16 Total: -1.00 -76.84 406.77 -0.28 -77.12 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: -1.24 Total: 38.88 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.38 Total: 12.34 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -7.07 Total: -117.12 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -0.10 Total: -51.96 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.72 Total: -3.97 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -76.84 -0.28 -77.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715867113.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.054 kcal (2) G-P(sol) polarization free energy of solvation -76.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds