Wall clock time and date at job start Wed Apr 1 2020 00:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99994 * 2 1 4 4 H 1.48509 * 109.46929 * 239.99917 * 3 2 1 5 5 H 1.48499 * 109.47352 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47294 * 120.00260 * 3 2 1 7 7 C 1.38950 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99739 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00336 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00065 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00301 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00087 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47466 * 179.97438 * 12 10 9 14 14 C 1.46900 * 111.00450 * 180.02562 * 13 12 10 15 15 C 1.50696 * 109.47470 * 180.02562 * 14 13 12 16 16 C 1.30994 * 120.00346 * 127.00411 * 15 14 13 17 17 C 1.50702 * 119.99473 * 7.56391 * 16 15 14 18 18 N 1.46502 * 109.47189 * 127.15827 * 17 16 15 19 19 C 1.34776 * 119.99961 * 180.02562 * 18 17 16 20 20 O 1.21274 * 120.00266 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99629 * 179.97438 * 19 18 17 22 22 C 1.53009 * 109.47239 * 299.99450 * 21 19 18 23 23 C 1.52996 * 109.47016 * 180.02562 * 22 21 19 24 24 C 1.52992 * 109.47526 * 60.00087 * 23 22 21 25 25 F 1.39895 * 109.47316 * 180.02562 * 24 23 22 26 26 C 1.52997 * 109.47194 * 299.99956 * 24 23 22 27 27 C 1.53002 * 109.46898 * 180.02562 * 21 19 18 28 28 H 0.96998 * 119.99508 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99885 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47149 * 60.00559 * 12 10 9 31 31 H 1.08999 * 109.47449 * 300.00110 * 12 10 9 32 32 H 1.00905 * 111.00278 * 303.96182 * 13 12 10 33 33 H 1.09005 * 109.46494 * 59.99967 * 14 13 12 34 34 H 1.09001 * 109.46807 * 300.00873 * 14 13 12 35 35 H 1.08001 * 119.99570 * 307.00999 * 15 14 13 36 36 H 1.08001 * 120.00559 * 187.56021 * 16 15 14 37 37 H 1.08994 * 109.47898 * 7.15285 * 17 16 15 38 38 H 1.09000 * 109.47041 * 247.14886 * 17 16 15 39 39 H 0.97004 * 119.99923 * 359.97438 * 18 17 16 40 40 H 1.09001 * 109.47632 * 59.99922 * 21 19 18 41 41 H 1.08996 * 109.46589 * 300.00363 * 22 21 19 42 42 H 1.08994 * 109.46585 * 60.00187 * 22 21 19 43 43 H 1.09003 * 109.46831 * 299.99747 * 23 22 21 44 44 H 1.08998 * 109.47193 * 180.02562 * 23 22 21 45 45 H 1.09005 * 109.47118 * 59.99480 * 24 23 22 46 46 H 1.08999 * 109.47360 * 299.99915 * 26 24 23 47 47 H 1.09000 * 109.47314 * 179.97438 * 26 24 23 48 48 H 1.09000 * 109.46995 * 299.99298 * 27 21 19 49 49 H 1.08999 * 109.47294 * 60.00038 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7465 -0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8629 0.0011 13 7 2.1982 -5.9795 0.0004 14 6 1.4979 -7.2709 0.0003 15 6 2.5073 -8.3898 0.0002 16 6 2.4392 -9.3336 0.9060 17 6 1.2585 -9.3972 1.8404 18 7 0.6724 -10.7392 1.7961 19 6 -0.4023 -11.0306 2.5553 20 8 -0.8840 -10.1821 3.2756 21 6 -1.0055 -12.4109 2.5093 22 6 -1.4661 -12.7188 1.0830 23 6 -2.0790 -14.1199 1.0364 24 6 -3.2781 -14.1839 1.9846 25 9 -3.8381 -15.4652 1.9424 26 6 -2.8175 -13.8759 3.4107 27 6 -2.2049 -12.4751 3.4570 28 1 -0.4849 0.8401 0.0004 29 1 0.3534 -2.3906 -0.0002 30 1 0.6167 -4.9209 -0.8887 31 1 0.6173 -4.9205 0.8913 32 1 2.8326 -5.9125 -0.7814 33 1 0.8726 -7.3450 -0.8895 34 1 0.8733 -7.3455 0.8905 35 1 3.2870 -8.4135 -0.7468 36 1 3.2290 -10.0661 0.9833 37 1 0.5122 -8.6645 1.5335 38 1 1.5868 -9.1777 2.8563 39 1 1.0574 -11.4178 1.2197 40 1 -0.2596 -13.1439 2.8164 41 1 -2.2121 -11.9858 0.7760 42 1 -0.6120 -12.6729 0.4076 43 1 -1.3333 -14.8531 1.3437 44 1 -2.4068 -14.3395 0.0204 45 1 -4.0238 -13.4506 1.6773 46 1 -2.0718 -14.6091 3.7180 47 1 -3.6718 -13.9211 4.0861 48 1 -1.8772 -12.2556 4.4731 49 1 -2.9508 -11.7422 3.1494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715867153.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:55 Heat of formation + Delta-G solvation = -123.394506 kcal Electronic energy + Delta-G solvation = -28273.444331 eV Core-core repulsion = 23956.245069 eV Total energy + Delta-G solvation = -4317.199262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.06635 -40.53196 -38.38917 -37.91796 -36.93728 -35.10393 -33.90744 -32.96641 -31.44101 -31.21717 -30.99884 -28.00602 -26.26351 -24.77390 -23.66483 -23.29162 -23.16617 -21.10049 -20.38477 -19.53735 -18.89908 -17.88370 -17.37451 -16.79155 -16.62131 -16.51343 -15.96536 -15.64188 -15.51566 -15.36856 -15.07879 -14.64679 -14.43331 -14.31371 -14.04300 -13.88964 -13.67193 -13.60533 -13.26319 -12.94930 -12.89304 -12.74216 -12.47260 -12.24865 -12.06227 -11.86225 -11.76208 -11.55144 -11.53402 -11.49069 -11.01439 -10.96265 -10.86549 -10.60984 -10.43625 -10.20928 -10.15082 -9.60815 -9.49500 -9.16850 -8.46454 -8.05527 -7.95405 -6.40932 -3.81922 1.77713 2.32250 2.99513 3.20847 3.26521 3.30996 3.87590 3.91193 3.92057 4.01314 4.13533 4.29988 4.40902 4.42056 4.46592 4.52949 4.64032 4.71154 4.80147 4.81481 4.85854 5.09275 5.10259 5.16263 5.25334 5.26325 5.31941 5.36841 5.45215 5.49922 5.53894 5.54738 5.59820 5.66971 5.70784 5.79710 5.82782 5.97503 6.08267 6.25844 6.33052 6.55983 7.15729 7.17371 7.55695 7.62009 7.91328 8.06574 8.61790 9.18269 9.54718 10.06148 10.76705 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.020718 B = 0.001454 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.189875 B =19249.852172 C =19929.726773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.663 5.663 14 C 0.069 3.931 15 C -0.110 4.110 16 C -0.184 4.184 17 C 0.139 3.861 18 N -0.725 5.725 19 C 0.514 3.486 20 O -0.535 6.535 21 C -0.109 4.109 22 C -0.109 4.109 23 C -0.143 4.143 24 C 0.088 3.912 25 F -0.216 7.216 26 C -0.145 4.145 27 C -0.098 4.098 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.350 0.650 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.400 0.600 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 -31.332 1.376 31.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.295 5.295 14 C -0.059 4.059 15 C -0.129 4.129 16 C -0.203 4.203 17 C 0.017 3.983 18 N -0.377 5.377 19 C 0.300 3.700 20 O -0.411 6.411 21 C -0.131 4.131 22 C -0.147 4.147 23 C -0.181 4.181 24 C 0.052 3.948 25 F -0.197 7.197 26 C -0.183 4.183 27 C -0.136 4.136 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.169 0.831 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.234 0.766 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.131 -30.528 2.589 31.064 hybrid contribution -0.239 0.436 -1.219 1.317 sum -5.369 -30.092 1.369 30.598 Atomic orbital electron populations 1.69608 1.05940 1.28276 1.50457 1.25268 0.95640 0.99732 0.97272 0.85907 0.78748 0.80415 0.79069 1.19931 1.20975 1.19864 1.19663 0.93365 0.82249 1.47770 0.87954 1.41849 1.09214 1.04582 1.64289 1.19776 0.88374 0.84694 0.84562 1.90521 1.13745 1.87059 1.55467 1.21697 0.94334 0.90925 1.01320 1.60101 1.18752 0.99373 1.51306 1.21289 0.94905 0.88432 1.01305 1.22848 0.98904 0.94299 0.96897 1.22658 0.98598 1.01788 0.97278 1.20521 0.94076 0.83904 0.99840 1.46039 1.31565 1.14398 1.45700 1.20596 0.79930 0.89960 0.79517 1.90744 1.61179 1.49415 1.39741 1.21421 0.99195 0.94724 0.97727 1.21484 1.01610 0.96786 0.94794 1.22109 0.97620 0.97974 1.00378 1.21654 0.95458 0.80720 0.97008 1.92815 1.86992 1.42248 1.97612 1.22148 1.02094 0.98184 0.95844 1.21290 0.96303 0.95923 1.00083 0.91810 0.77431 0.93807 0.89487 0.83113 0.94498 0.89665 0.86558 0.86449 0.89948 0.90667 0.76616 0.88195 0.90680 0.90497 0.90420 0.90240 0.89736 0.90615 0.90258 0.90194 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 10 C 0.44 10.53 7.82 -10.99 -0.09 10.44 16 11 O -0.58 -16.01 15.78 5.55 0.09 -15.92 16 12 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 13 N -0.66 -10.69 6.11 -116.34 -0.71 -11.40 16 14 C 0.07 0.83 5.77 -4.98 -0.03 0.80 16 15 C -0.11 -1.08 9.77 -36.03 -0.35 -1.43 16 16 C -0.18 -1.54 9.63 -36.02 -0.35 -1.89 16 17 C 0.14 1.30 5.76 -5.19 -0.03 1.27 16 18 N -0.73 -5.24 5.44 -61.47 -0.33 -5.57 16 19 C 0.51 4.56 7.15 -10.98 -0.08 4.49 16 20 O -0.53 -7.20 15.98 5.56 0.09 -7.11 16 21 C -0.11 -0.60 2.53 -91.76 -0.23 -0.83 16 22 C -0.11 -0.44 5.10 -26.73 -0.14 -0.58 16 23 C -0.14 -0.58 5.66 -26.74 -0.15 -0.73 16 24 C 0.09 0.48 3.87 -26.74 -0.10 0.37 16 25 F -0.22 -1.73 17.08 2.25 0.04 -1.69 16 26 C -0.14 -0.73 5.66 -26.75 -0.15 -0.88 16 27 C -0.10 -0.61 4.49 -26.75 -0.12 -0.73 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 29 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.35 5.70 8.42 -39.29 -0.33 5.36 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 1.04 5.29 -51.93 -0.27 0.76 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.08 0.89 5.30 -51.93 -0.28 0.61 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.40 1.72 7.88 -40.82 -0.32 1.40 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.21 7.56 -51.93 -0.39 -0.18 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 49 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -34.28 403.87 -8.96 -43.24 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -7.77 Total: 11.62 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.09 Total: 3.05 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.38 Total: -55.44 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.18 Total: -23.03 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.28 -8.96 -43.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715867153.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.157 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds