Wall clock time and date at job start Wed Apr 1 2020 00:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00319 * 2 1 4 4 H 1.48494 * 109.47154 * 270.00152 * 3 2 1 5 5 H 1.48492 * 109.47098 * 30.00193 * 3 2 1 6 6 H 1.48496 * 109.47126 * 150.00515 * 3 2 1 7 7 C 1.38816 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99669 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00562 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00549 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47372 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.06040 * 306.42350 * 11 10 9 13 13 C 1.54265 * 110.03122 * 67.83553 * 11 10 9 14 14 C 1.54892 * 104.19605 * 142.89537 * 13 11 10 15 15 C 1.54884 * 102.74993 * 322.05548 * 14 13 11 16 16 C 1.53879 * 110.03516 * 185.00062 * 11 10 9 17 17 H 1.09002 * 110.02446 * 0.04911 * 16 11 10 18 18 N 1.46497 * 110.03387 * 121.43091 * 16 11 10 19 19 C 1.34771 * 120.00197 * 205.00613 * 18 16 11 20 20 O 1.21280 * 120.00113 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00182 * 180.02562 * 19 18 16 22 22 C 1.50697 * 109.47453 * 179.97438 * 21 19 18 23 23 C 1.34242 * 126.50155 * 264.97217 * 22 21 19 24 24 N 1.36827 * 109.93407 * 180.02562 * 23 22 21 25 25 H 0.96998 * 125.06640 * 180.02562 * 24 23 22 26 26 C 1.37686 * 109.87116 * 0.02562 * 24 23 22 27 27 C 1.39127 * 133.50864 * 180.02562 * 26 24 23 28 28 C 1.37755 * 119.78052 * 179.97438 * 27 26 24 29 29 C 1.38831 * 120.66440 * 0.03895 * 28 27 26 30 30 C 1.36628 * 120.53083 * 359.94200 * 29 28 27 31 31 C 1.39635 * 119.75966 * 0.03734 * 30 29 28 32 32 H 0.96998 * 119.99964 * 359.97438 * 1 2 3 33 33 H 0.97003 * 119.99686 * 0.02562 * 9 7 2 34 34 H 1.09003 * 109.46974 * 60.00250 * 10 9 7 35 35 H 1.09005 * 109.47261 * 300.00622 * 10 9 7 36 36 H 1.09003 * 110.48972 * 261.57166 * 13 11 10 37 37 H 1.09004 * 110.48723 * 24.21652 * 13 11 10 38 38 H 1.08998 * 110.75792 * 80.37449 * 14 13 11 39 39 H 1.09004 * 110.75607 * 203.56083 * 14 13 11 40 40 H 1.09007 * 110.49169 * 279.26980 * 15 14 13 41 41 H 1.08996 * 110.49061 * 156.62051 * 15 14 13 42 42 H 0.97001 * 119.99794 * 25.00152 * 18 16 11 43 43 H 1.09004 * 109.47491 * 59.98995 * 21 19 18 44 44 H 1.09002 * 109.47008 * 299.99851 * 21 19 18 45 45 H 1.08003 * 125.03372 * 0.04261 * 23 22 21 46 46 H 1.08000 * 120.11001 * 359.97438 * 27 26 24 47 47 H 1.07991 * 119.66627 * 180.02562 * 28 27 26 48 48 H 1.08002 * 119.73623 * 179.97438 * 29 28 27 49 49 H 1.07997 * 120.11675 * 180.31584 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6162 -2.1915 -0.0011 12 1 5.8728 -1.5256 -0.8249 13 6 6.0359 -1.5574 1.3412 14 6 7.4269 -2.1727 1.6335 15 6 7.2648 -3.6329 1.1430 16 6 6.3976 -3.5112 -0.1271 17 1 5.7051 -4.3506 -0.1891 18 7 7.2520 -3.4769 -1.3167 19 6 7.6251 -4.6271 -1.9117 20 8 7.2539 -5.6906 -1.4622 21 6 8.5044 -4.5919 -3.1351 22 6 8.7736 -5.9995 -3.6010 23 6 9.8416 -6.7522 -3.2929 24 7 9.7415 -7.9745 -3.8995 25 1 10.3935 -8.6888 -3.8248 26 6 8.5774 -8.0396 -4.6319 27 6 7.9973 -9.0263 -5.4228 28 6 6.7912 -8.7848 -6.0430 29 6 6.1471 -7.5648 -5.8880 30 6 6.6987 -6.5819 -5.1157 31 6 7.9203 -6.8055 -4.4775 32 1 -0.4850 0.8400 0.0004 33 1 3.8646 -0.3623 -0.0007 34 1 3.8484 -3.0428 -0.8909 35 1 3.8490 -3.0425 0.8891 36 1 6.1105 -0.4743 1.2446 37 1 5.3283 -1.8235 2.1265 38 1 8.2035 -1.6588 1.0670 39 1 7.6459 -2.1430 2.7009 40 1 6.7557 -4.2342 1.8963 41 1 8.2362 -4.0644 0.9017 42 1 7.5491 -2.6263 -1.6760 43 1 9.4478 -4.1037 -2.8906 44 1 8.0026 -4.0362 -3.9273 45 1 10.6586 -6.4393 -2.6596 46 1 8.4909 -9.9785 -5.5500 47 1 6.3424 -9.5522 -6.6561 48 1 5.2022 -7.3914 -6.3815 49 1 6.1894 -5.6372 -4.9956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716073641.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:21 Heat of formation + Delta-G solvation = 23.189745 kcal Electronic energy + Delta-G solvation = -28864.455262 eV Core-core repulsion = 24984.381594 eV Total energy + Delta-G solvation = -3880.073667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.46239 -39.91210 -38.01830 -37.01932 -34.63699 -33.45215 -33.14118 -31.50693 -30.44569 -29.43387 -29.02152 -28.15459 -26.70928 -24.48774 -22.99765 -21.91805 -21.88406 -21.42186 -20.11040 -19.92081 -19.24699 -18.02449 -17.61985 -16.76664 -16.60614 -16.32997 -15.61412 -15.34206 -14.78537 -14.63899 -14.40020 -14.39109 -14.15029 -13.91978 -13.82485 -13.45541 -13.14014 -13.07914 -12.81979 -12.64628 -12.26081 -12.11722 -11.83571 -11.80511 -11.58004 -11.37748 -11.06878 -10.95767 -10.90719 -10.80973 -10.64532 -10.47876 -10.37030 -10.09690 -9.91787 -9.58879 -9.54535 -8.93809 -8.86390 -8.34509 -7.81022 -7.20452 -5.74285 -3.09556 0.99721 1.51801 2.41709 2.73896 2.92387 3.35386 3.37488 3.39718 3.45696 3.82833 4.52609 4.57907 4.59488 4.60827 4.72024 4.75998 4.93258 4.97043 5.01193 5.04117 5.14287 5.31885 5.35122 5.38825 5.51013 5.52138 5.56827 5.62697 5.66852 5.73825 5.74740 5.79543 5.82316 5.89520 5.97716 5.99779 6.16227 6.19211 6.34023 6.36630 6.48909 6.50062 6.54444 6.60702 6.61745 6.71895 6.84793 7.02039 7.32476 7.58654 8.02654 8.34138 8.44770 9.24042 9.96121 10.16389 11.44345 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.002438 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.138790 B =11484.317199 C =12977.104144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.166 3.834 11 C -0.107 4.107 12 H 0.077 0.923 13 C -0.116 4.116 14 C -0.124 4.124 15 C -0.129 4.129 16 C 0.147 3.853 17 H 0.093 0.907 18 N -0.724 5.724 19 C 0.510 3.490 20 O -0.529 6.529 21 C -0.066 4.066 22 C -0.150 4.150 23 C 0.061 3.939 24 N -0.595 5.595 25 H 0.414 0.586 26 C 0.095 3.905 27 C -0.133 4.133 28 C -0.100 4.100 29 C -0.147 4.147 30 C -0.066 4.066 31 C -0.090 4.090 32 H 0.259 0.741 33 H 0.360 0.640 34 H 0.027 0.973 35 H 0.029 0.971 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.397 0.603 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.167 0.833 46 H 0.117 0.883 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.855 -13.598 -8.610 30.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.038 3.962 11 C -0.126 4.126 12 H 0.095 0.905 13 C -0.154 4.154 14 C -0.162 4.162 15 C -0.168 4.168 16 C 0.042 3.958 17 H 0.111 0.889 18 N -0.376 5.376 19 C 0.296 3.704 20 O -0.404 6.404 21 C -0.107 4.107 22 C -0.157 4.157 23 C -0.065 4.065 24 N -0.198 5.198 25 H 0.251 0.749 26 C -0.012 4.012 27 C -0.154 4.154 28 C -0.120 4.120 29 C -0.166 4.166 30 C -0.085 4.085 31 C -0.094 4.094 32 H 0.069 0.931 33 H 0.193 0.807 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.232 0.768 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.185 0.815 46 H 0.135 0.865 47 H 0.141 0.859 48 H 0.140 0.860 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 25.436 -14.549 -8.252 30.442 hybrid contribution 0.923 1.349 -0.061 1.636 sum 26.359 -13.200 -8.313 30.629 Atomic orbital electron populations 1.69703 1.05103 1.25754 1.57763 1.24676 0.95237 0.97172 1.02199 0.86534 0.79211 0.85020 0.77702 1.21156 1.21786 1.20315 1.19076 0.80674 0.94744 1.42699 0.89252 1.42678 1.03983 1.02145 1.91175 1.20711 0.87420 0.89291 0.98747 1.22273 0.96750 0.95193 0.98402 0.90519 1.22421 0.96089 0.99753 0.97129 1.22525 0.97488 0.95605 1.00591 1.22726 0.99867 0.96987 0.97179 1.21593 0.91402 0.98960 0.83815 0.88862 1.46209 1.52504 1.08598 1.30258 1.20661 0.80989 0.83967 0.84778 1.90720 1.54960 1.29829 1.64941 1.19949 1.00339 0.94270 0.96116 1.19522 0.95997 0.95932 1.04295 1.21490 1.00517 0.84947 0.99572 1.41639 1.19880 1.14830 1.43460 0.74911 1.18223 0.88460 0.96582 0.97933 1.19987 0.97289 0.97651 1.00493 1.20793 0.94411 0.97287 0.99459 1.20651 1.00729 0.93888 1.01342 1.20305 0.93373 0.99351 0.95438 1.18987 0.95967 0.93629 1.00834 0.93097 0.80716 0.95524 0.95263 0.91709 0.90599 0.91991 0.91773 0.90844 0.91725 0.76844 0.88399 0.88194 0.81541 0.86497 0.85892 0.85998 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.70 13.97 55.49 0.78 -28.92 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 22.08 27.74 -169.99 -4.71 17.37 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 7 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 9 N -0.75 -17.90 5.25 -59.91 -0.31 -18.21 16 10 C 0.17 3.22 5.31 -4.05 -0.02 3.20 16 11 C -0.11 -1.56 2.73 -89.50 -0.24 -1.80 16 12 H 0.08 1.08 7.62 -51.93 -0.40 0.68 16 13 C -0.12 -1.60 6.08 -25.07 -0.15 -1.75 16 14 C -0.12 -1.37 6.91 -24.74 -0.17 -1.54 16 15 C -0.13 -1.52 6.54 -25.07 -0.16 -1.69 16 16 C 0.15 1.95 2.90 -66.81 -0.19 1.75 16 17 H 0.09 1.48 7.10 -51.93 -0.37 1.11 16 18 N -0.72 -7.98 5.03 -52.72 -0.27 -8.24 16 19 C 0.51 6.27 7.82 -10.99 -0.09 6.18 16 20 O -0.53 -8.86 15.69 5.56 0.09 -8.77 16 21 C -0.07 -0.59 6.23 -29.04 -0.18 -0.77 16 22 C -0.15 -1.62 4.81 -102.71 -0.49 -2.12 16 23 C 0.06 0.54 11.73 -16.73 -0.20 0.34 16 24 N -0.60 -5.07 6.07 -10.65 -0.06 -5.13 16 25 H 0.41 2.15 8.96 -40.82 -0.37 1.78 16 26 C 0.09 1.05 7.28 -83.99 -0.61 0.44 16 27 C -0.13 -1.30 10.08 -39.43 -0.40 -1.70 16 28 C -0.10 -0.97 10.01 -39.54 -0.40 -1.37 16 29 C -0.15 -1.58 9.97 -39.94 -0.40 -1.98 16 30 C -0.07 -0.80 10.05 -39.64 -0.40 -1.20 16 31 C -0.09 -1.11 6.35 -105.14 -0.67 -1.78 16 32 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 33 H 0.36 8.24 5.41 -40.82 -0.22 8.02 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.16 7.76 -51.93 -0.40 0.76 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 42 H 0.40 3.34 8.32 -40.82 -0.34 3.00 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.17 0.92 8.06 -52.48 -0.42 0.49 16 46 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 49 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 400.13 15.07 6.03 6.03 Total: -1.00 -36.75 400.13 -11.09 -47.83 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -7.59 Total: 10.95 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -5.03 Total: -12.89 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.13 Total: -60.51 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.75 -11.09 -47.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716073641.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.021 kcal (2) G-P(sol) polarization free energy of solvation -36.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds