Wall clock time and date at job start Wed Apr 1 2020 00:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00319 * 2 1 4 4 H 1.48494 * 109.47154 * 270.00152 * 3 2 1 5 5 H 1.48492 * 109.47098 * 30.00193 * 3 2 1 6 6 H 1.48496 * 109.47126 * 150.00515 * 3 2 1 7 7 C 1.38816 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99669 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00562 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00549 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47372 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.06040 * 306.42350 * 11 10 9 13 13 C 1.54265 * 110.03122 * 67.83553 * 11 10 9 14 14 C 1.54892 * 104.19605 * 142.89537 * 13 11 10 15 15 C 1.54884 * 102.74993 * 322.05548 * 14 13 11 16 16 C 1.53879 * 110.03516 * 185.00062 * 11 10 9 17 17 H 1.09002 * 110.02446 * 0.04911 * 16 11 10 18 18 N 1.46497 * 110.03387 * 121.43091 * 16 11 10 19 19 C 1.34771 * 120.00197 * 205.00613 * 18 16 11 20 20 O 1.21280 * 120.00113 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00182 * 180.02562 * 19 18 16 22 22 C 1.50697 * 109.47453 * 179.97438 * 21 19 18 23 23 C 1.34242 * 126.50155 * 264.97217 * 22 21 19 24 24 N 1.36827 * 109.93407 * 180.02562 * 23 22 21 25 25 H 0.96998 * 125.06640 * 180.02562 * 24 23 22 26 26 C 1.37686 * 109.87116 * 0.02562 * 24 23 22 27 27 C 1.39127 * 133.50864 * 180.02562 * 26 24 23 28 28 C 1.37755 * 119.78052 * 179.97438 * 27 26 24 29 29 C 1.38831 * 120.66440 * 0.03895 * 28 27 26 30 30 C 1.36628 * 120.53083 * 359.94200 * 29 28 27 31 31 C 1.39635 * 119.75966 * 0.03734 * 30 29 28 32 32 H 0.96998 * 119.99964 * 359.97438 * 1 2 3 33 33 H 0.97003 * 119.99686 * 0.02562 * 9 7 2 34 34 H 1.09003 * 109.46974 * 60.00250 * 10 9 7 35 35 H 1.09005 * 109.47261 * 300.00622 * 10 9 7 36 36 H 1.09003 * 110.48972 * 261.57166 * 13 11 10 37 37 H 1.09004 * 110.48723 * 24.21652 * 13 11 10 38 38 H 1.08998 * 110.75792 * 80.37449 * 14 13 11 39 39 H 1.09004 * 110.75607 * 203.56083 * 14 13 11 40 40 H 1.09007 * 110.49169 * 279.26980 * 15 14 13 41 41 H 1.08996 * 110.49061 * 156.62051 * 15 14 13 42 42 H 0.97001 * 119.99794 * 25.00152 * 18 16 11 43 43 H 1.09004 * 109.47491 * 59.98995 * 21 19 18 44 44 H 1.09002 * 109.47008 * 299.99851 * 21 19 18 45 45 H 1.08003 * 125.03372 * 0.04261 * 23 22 21 46 46 H 1.08000 * 120.11001 * 359.97438 * 27 26 24 47 47 H 1.07991 * 119.66627 * 180.02562 * 28 27 26 48 48 H 1.08002 * 119.73623 * 179.97438 * 29 28 27 49 49 H 1.07997 * 120.11675 * 180.31584 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6162 -2.1915 -0.0011 12 1 5.8728 -1.5256 -0.8249 13 6 6.0359 -1.5574 1.3412 14 6 7.4269 -2.1727 1.6335 15 6 7.2648 -3.6329 1.1430 16 6 6.3976 -3.5112 -0.1271 17 1 5.7051 -4.3506 -0.1891 18 7 7.2520 -3.4769 -1.3167 19 6 7.6251 -4.6271 -1.9117 20 8 7.2539 -5.6906 -1.4622 21 6 8.5044 -4.5919 -3.1351 22 6 8.7736 -5.9995 -3.6010 23 6 9.8416 -6.7522 -3.2929 24 7 9.7415 -7.9745 -3.8995 25 1 10.3935 -8.6888 -3.8248 26 6 8.5774 -8.0396 -4.6319 27 6 7.9973 -9.0263 -5.4228 28 6 6.7912 -8.7848 -6.0430 29 6 6.1471 -7.5648 -5.8880 30 6 6.6987 -6.5819 -5.1157 31 6 7.9203 -6.8055 -4.4775 32 1 -0.4850 0.8400 0.0004 33 1 3.8646 -0.3623 -0.0007 34 1 3.8484 -3.0428 -0.8909 35 1 3.8490 -3.0425 0.8891 36 1 6.1105 -0.4743 1.2446 37 1 5.3283 -1.8235 2.1265 38 1 8.2035 -1.6588 1.0670 39 1 7.6459 -2.1430 2.7009 40 1 6.7557 -4.2342 1.8963 41 1 8.2362 -4.0644 0.9017 42 1 7.5491 -2.6263 -1.6760 43 1 9.4478 -4.1037 -2.8906 44 1 8.0026 -4.0362 -3.9273 45 1 10.6586 -6.4393 -2.6596 46 1 8.4909 -9.9785 -5.5500 47 1 6.3424 -9.5522 -6.6561 48 1 5.2022 -7.3914 -6.3815 49 1 6.1894 -5.6372 -4.9956 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716073641.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:20 Heat of formation + Delta-G solvation = -1.199718 kcal Electronic energy + Delta-G solvation = -28865.512868 eV Core-core repulsion = 24984.381594 eV Total energy + Delta-G solvation = -3881.131274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.17858 -40.93912 -39.14869 -37.75603 -36.45873 -34.52276 -33.93539 -33.50742 -31.22003 -30.57890 -30.17602 -29.07313 -27.58043 -26.18232 -23.76221 -23.69426 -22.66476 -22.38156 -21.27155 -20.92094 -20.20901 -19.58867 -18.70773 -17.78318 -17.53524 -17.25534 -16.44463 -16.37393 -16.32792 -15.86678 -15.68271 -15.32833 -15.21272 -14.92646 -14.90512 -14.66932 -14.54347 -14.31027 -13.80213 -13.67626 -13.55997 -13.41315 -12.95500 -12.87516 -12.55820 -12.49909 -12.37483 -12.24374 -12.13699 -11.91401 -11.83271 -11.74432 -11.69676 -11.68015 -11.45381 -10.98431 -10.86710 -10.42753 -9.94333 -9.32185 -9.10721 -8.53377 -8.03470 -5.38193 0.23861 0.72260 1.37498 1.43108 1.50604 1.67739 1.81363 2.30001 2.46524 2.48835 3.02125 3.27033 3.39987 3.68020 3.82121 3.87145 3.91525 3.93619 4.03921 4.21118 4.25764 4.37857 4.40916 4.45472 4.48721 4.53225 4.62065 4.63552 4.68617 4.72402 4.79258 4.83768 4.94681 4.99311 5.01289 5.03528 5.11337 5.18458 5.25201 5.27116 5.34351 5.51083 5.58286 5.70279 5.72006 5.73667 5.79166 5.85977 6.19867 6.27259 6.72338 6.77344 7.06725 7.44585 7.80720 8.03887 9.18387 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.002438 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.138790 B =11484.317199 C =12977.104144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.244 1.244 7 C -0.241 4.241 8 H 0.047 0.953 9 N -0.751 5.751 10 C 0.164 3.836 11 C -0.094 4.094 12 H 0.092 0.908 13 C -0.118 4.118 14 C -0.109 4.109 15 C -0.123 4.123 16 C 0.153 3.847 17 H 0.058 0.942 18 N -0.712 5.712 19 C 0.509 3.491 20 O -0.580 6.580 21 C -0.056 4.056 22 C -0.185 4.185 23 C 0.073 3.927 24 N -0.586 5.586 25 H 0.430 0.570 26 C 0.073 3.927 27 C -0.135 4.135 28 C -0.111 4.111 29 C -0.158 4.158 30 C -0.096 4.096 31 C -0.120 4.120 32 H 0.259 0.741 33 H 0.369 0.631 34 H 0.010 0.990 35 H 0.018 0.982 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.414 0.586 43 H 0.138 0.862 44 H 0.108 0.892 45 H 0.204 0.796 46 H 0.143 0.857 47 H 0.148 0.852 48 H 0.132 0.868 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.184 -12.459 -8.694 33.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.168 1.168 7 C -0.372 4.372 8 H 0.066 0.934 9 N -0.397 5.397 10 C 0.038 3.962 11 C -0.113 4.113 12 H 0.110 0.890 13 C -0.155 4.155 14 C -0.146 4.146 15 C -0.162 4.162 16 C 0.047 3.953 17 H 0.076 0.924 18 N -0.365 5.365 19 C 0.297 3.703 20 O -0.459 6.459 21 C -0.096 4.096 22 C -0.192 4.192 23 C -0.054 4.054 24 N -0.190 5.190 25 H 0.269 0.731 26 C -0.034 4.034 27 C -0.155 4.155 28 C -0.130 4.130 29 C -0.177 4.177 30 C -0.115 4.115 31 C -0.124 4.124 32 H 0.068 0.932 33 H 0.203 0.797 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.251 0.749 43 H 0.155 0.845 44 H 0.127 0.873 45 H 0.221 0.779 46 H 0.161 0.839 47 H 0.166 0.834 48 H 0.150 0.850 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 29.836 -13.419 -8.347 33.763 hybrid contribution -0.504 0.829 -0.050 0.972 sum 29.332 -12.590 -8.397 33.006 Atomic orbital electron populations 1.69909 1.07390 1.26876 1.59457 1.25617 0.96224 1.01682 1.02253 0.85310 0.78847 0.78751 0.78308 1.20134 1.22237 1.16802 1.19014 0.82913 0.93343 1.41885 0.93443 1.42581 1.02258 1.03966 1.90898 1.20804 0.90766 0.87376 0.97277 1.22128 0.92876 0.96352 0.99992 0.88987 1.22409 0.97452 1.00202 0.95480 1.22460 0.96139 0.94212 1.01813 1.22660 0.99653 0.97953 0.95921 1.21329 0.91540 0.96752 0.85713 0.92355 1.46063 1.51601 1.09367 1.29448 1.21320 0.80567 0.83199 0.85209 1.90700 1.56970 1.31708 1.66530 1.19976 1.01350 0.94009 0.94294 1.19849 0.96760 0.97228 1.05363 1.22094 1.00616 0.84320 0.98398 1.41693 1.19386 1.15378 1.42547 0.73063 1.18503 0.89476 0.96617 0.98800 1.20357 0.97214 0.98401 0.99545 1.21126 0.94624 0.97418 0.99831 1.20913 1.01270 0.94303 1.01184 1.20445 0.94258 0.99763 0.97004 1.19404 0.96418 0.95024 1.01592 0.93248 0.79679 0.97204 0.96445 0.90980 0.92675 0.89581 0.90491 0.91799 0.90817 0.74852 0.84457 0.87345 0.77930 0.83925 0.83444 0.85010 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.51 13.97 21.65 0.30 -64.21 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 3 Si 0.96 45.13 27.74 68.60 1.90 47.03 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.24 -10.02 6.52 99.48 0.65 -9.37 16 7 C -0.24 -14.22 10.47 84.04 0.88 -13.34 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 9 N -0.75 -35.61 5.25 -343.45 -1.80 -37.41 16 10 C 0.16 6.54 5.31 86.38 0.46 7.00 16 11 C -0.09 -2.63 2.73 -10.07 -0.03 -2.66 16 12 H 0.09 2.32 7.62 -2.39 -0.02 2.30 16 13 C -0.12 -2.95 6.08 31.67 0.19 -2.75 16 14 C -0.11 -2.00 6.91 31.88 0.22 -1.78 16 15 C -0.12 -2.68 6.54 31.67 0.21 -2.47 16 16 C 0.15 3.92 2.90 45.72 0.13 4.06 16 17 H 0.06 1.93 7.10 -2.39 -0.02 1.92 16 18 N -0.71 -14.42 5.03 -439.11 -2.21 -16.62 16 19 C 0.51 11.98 7.82 87.66 0.69 12.67 16 20 O -0.58 -19.69 15.69 -3.03 -0.05 -19.74 16 21 C -0.06 -0.89 6.23 29.10 0.18 -0.71 16 22 C -0.18 -3.78 4.81 -18.63 -0.09 -3.87 16 23 C 0.07 1.11 11.73 83.00 0.97 2.08 16 24 N -0.59 -8.93 6.07 -187.61 -1.14 -10.07 16 25 H 0.43 3.48 8.96 -92.71 -0.83 2.64 16 26 C 0.07 1.57 7.28 39.03 0.28 1.86 16 27 C -0.13 -2.51 10.08 22.37 0.23 -2.29 16 28 C -0.11 -2.11 10.01 22.30 0.22 -1.89 16 29 C -0.16 -3.52 9.97 22.03 0.22 -3.30 16 30 C -0.10 -2.46 10.05 22.23 0.22 -2.24 16 31 C -0.12 -3.01 6.35 -20.20 -0.13 -3.14 16 32 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 33 H 0.37 16.12 5.41 -92.71 -0.50 15.62 16 34 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.02 0.74 8.00 -2.38 -0.02 0.72 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.62 7.76 -2.38 -0.02 1.60 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.07 1.50 8.04 -2.39 -0.02 1.48 16 42 H 0.41 5.64 8.32 -92.71 -0.77 4.86 16 43 H 0.14 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 46 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 47 H 0.15 1.93 8.06 -2.92 -0.02 1.91 16 48 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 49 H 0.11 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -84.58 400.13 1.15 -83.43 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -1.18 Total: 33.88 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 5.33 Total: -16.29 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -4.85 Total: -128.31 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.05 Total: -19.74 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Total: -84.58 1.15 -83.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716073641.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.229 kcal (2) G-P(sol) polarization free energy of solvation -84.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds