Wall clock time and date at job start Wed Apr 1 2020 00:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00179 * 2 1 4 4 H 1.48510 * 109.46979 * 269.99822 * 3 2 1 5 5 H 1.48497 * 109.47278 * 29.99827 * 3 2 1 6 6 H 1.48501 * 109.47277 * 150.00148 * 3 2 1 7 7 C 1.38814 * 119.99673 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99973 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99828 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46614 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.82181 * 51.66261 * 11 10 9 13 13 C 1.54893 * 110.75349 * 288.32551 * 11 10 9 14 14 C 1.54266 * 104.19500 * 203.74603 * 13 11 10 15 15 C 1.53872 * 106.60044 * 23.61099 * 14 13 11 16 16 C 1.54266 * 106.59640 * 359.97438 * 15 14 13 17 17 H 1.09001 * 110.48620 * 95.07012 * 16 15 14 18 18 N 1.46506 * 110.48818 * 217.70889 * 16 15 14 19 19 C 1.34771 * 120.00040 * 273.54848 * 18 16 15 20 20 O 1.21282 * 120.00064 * 0.02562 * 19 18 16 21 21 C 1.50704 * 119.99845 * 179.97438 * 19 18 16 22 22 C 1.50702 * 109.47063 * 180.02562 * 21 19 18 23 23 C 1.34244 * 126.49885 * 264.68950 * 22 21 19 24 24 N 1.36833 * 109.93050 * 179.83187 * 23 22 21 25 25 H 0.96995 * 125.06230 * 180.18195 * 24 23 22 26 26 C 1.37694 * 109.87170 * 0.44582 * 24 23 22 27 27 C 1.39121 * 133.50669 * 179.71871 * 26 24 23 28 28 C 1.37753 * 119.77589 * 180.02562 * 27 26 24 29 29 C 1.38831 * 120.66883 * 359.97438 * 28 27 26 30 30 C 1.36629 * 120.52667 * 0.02562 * 29 28 27 31 31 C 1.39626 * 119.76305 * 0.02562 * 30 29 28 32 32 H 0.97002 * 119.99547 * 359.97438 * 1 2 3 33 33 H 0.96997 * 119.99346 * 0.02562 * 9 7 2 34 34 H 1.09000 * 109.47137 * 60.00588 * 10 9 7 35 35 H 1.08996 * 109.47307 * 299.99825 * 10 9 7 36 36 H 1.09002 * 110.48578 * 85.07081 * 13 11 10 37 37 H 1.08998 * 110.60430 * 322.47968 * 13 11 10 38 38 H 1.09002 * 110.02957 * 264.32709 * 14 13 11 39 39 H 1.09000 * 110.07144 * 142.92082 * 14 13 11 40 40 H 1.09003 * 110.03622 * 240.71485 * 15 14 13 41 41 H 1.09005 * 110.03465 * 119.28158 * 15 14 13 42 42 H 0.97005 * 119.99609 * 93.54377 * 18 16 15 43 43 H 1.08998 * 109.47060 * 299.99735 * 21 19 18 44 44 H 1.08999 * 109.47191 * 60.00123 * 21 19 18 45 45 H 1.07998 * 125.03632 * 359.97438 * 23 22 21 46 46 H 1.07998 * 120.11541 * 359.97438 * 27 26 24 47 47 H 1.08000 * 119.66599 * 179.97438 * 28 27 26 48 48 H 1.07998 * 119.73287 * 179.97438 * 29 28 27 49 49 H 1.08001 * 120.11395 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3319 -4.7033 -0.8006 13 6 0.3603 -4.9412 1.3735 14 6 -0.0929 -6.4144 1.4377 15 6 0.8248 -7.1986 0.4834 16 6 1.8032 -6.1745 -0.1279 17 1 2.7355 -6.1537 0.4365 18 7 2.0613 -6.4887 -1.5353 19 6 3.0347 -7.3611 -1.8634 20 8 3.6967 -7.8864 -0.9935 21 6 3.2999 -7.6848 -3.3112 22 6 4.4285 -8.6790 -3.4052 23 6 5.7257 -8.3978 -3.6056 24 7 6.4556 -9.5549 -3.6291 25 1 7.4157 -9.6056 -3.7574 26 6 5.6233 -10.6371 -3.4496 27 6 5.8365 -12.0108 -3.3957 28 6 4.7708 -12.8612 -3.1988 29 6 3.4838 -12.3617 -3.0527 30 6 3.2518 -11.0161 -3.1024 31 6 4.3172 -10.1360 -3.3021 32 1 -0.4849 0.8401 0.0004 33 1 0.3555 -2.3880 -0.0005 34 1 2.6846 -3.7147 0.8895 35 1 2.6846 -3.7147 -0.8905 36 1 -0.5009 -4.2748 1.4216 37 1 1.0575 -4.7211 2.1819 38 1 -1.1299 -6.5005 1.1132 39 1 0.0129 -6.7944 2.4538 40 1 0.2331 -7.6653 -0.3042 41 1 1.3767 -7.9586 1.0366 42 1 1.5315 -6.0688 -2.2310 43 1 2.4021 -8.1115 -3.7584 44 1 3.5728 -6.7734 -3.8432 45 1 6.1333 -7.4051 -3.7276 46 1 6.8339 -12.4092 -3.5087 47 1 4.9383 -13.9274 -3.1577 48 1 2.6593 -13.0422 -2.8995 49 1 2.2478 -10.6348 -2.9884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716073643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:26 Heat of formation + Delta-G solvation = -4.995689 kcal Electronic energy + Delta-G solvation = -28748.165882 eV Core-core repulsion = 24866.870003 eV Total energy + Delta-G solvation = -3881.295879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.17052 -40.85269 -39.07399 -37.73670 -36.28182 -34.62529 -33.93788 -33.29028 -31.20985 -30.20506 -30.14622 -29.02339 -27.45252 -26.23894 -23.92257 -23.71517 -22.64674 -22.20604 -21.45504 -20.78697 -20.13579 -19.19691 -18.69335 -17.79376 -17.50709 -17.27387 -16.63603 -16.34854 -16.11027 -15.81537 -15.46945 -15.16984 -15.05365 -15.03305 -14.90211 -14.65848 -14.57248 -14.19224 -13.83036 -13.64579 -13.43073 -13.10531 -13.01315 -12.88164 -12.77097 -12.53335 -12.35530 -12.24108 -12.12780 -12.04528 -11.85972 -11.68198 -11.59501 -11.56009 -11.29234 -10.93352 -10.87485 -10.42136 -9.93445 -9.09169 -8.98256 -8.53118 -7.94426 -5.22564 0.25564 0.75055 1.47632 1.48869 1.57426 1.67692 1.80539 2.29845 2.47402 2.56374 3.04711 3.38508 3.49342 3.69557 3.83399 3.91801 3.92385 4.03679 4.15436 4.23314 4.26821 4.41102 4.43950 4.46807 4.52436 4.56544 4.60189 4.64873 4.69842 4.72540 4.74842 4.84097 4.95816 4.98665 5.04939 5.05778 5.17053 5.24895 5.26110 5.29657 5.31286 5.47538 5.52526 5.60645 5.69783 5.73591 5.81718 5.87178 6.28050 6.29013 6.71213 6.75494 7.34943 7.42447 8.10287 8.35459 9.28741 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.002203 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.299519 B =12704.952977 C =14034.911171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.164 3.836 11 C -0.090 4.090 12 H 0.088 0.912 13 C -0.112 4.112 14 C -0.113 4.113 15 C -0.123 4.123 16 C 0.156 3.844 17 H 0.067 0.933 18 N -0.715 5.715 19 C 0.512 3.488 20 O -0.578 6.578 21 C -0.058 4.058 22 C -0.180 4.180 23 C 0.064 3.936 24 N -0.588 5.588 25 H 0.428 0.572 26 C 0.072 3.928 27 C -0.138 4.138 28 C -0.109 4.109 29 C -0.154 4.154 30 C -0.091 4.091 31 C -0.118 4.118 32 H 0.252 0.748 33 H 0.376 0.624 34 H 0.009 0.991 35 H 0.018 0.982 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.413 0.587 43 H 0.117 0.883 44 H 0.125 0.875 45 H 0.194 0.806 46 H 0.140 0.860 47 H 0.149 0.851 48 H 0.139 0.861 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.555 -25.770 -9.725 28.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.382 5.382 10 C 0.038 3.962 11 C -0.109 4.109 12 H 0.106 0.894 13 C -0.150 4.150 14 C -0.150 4.150 15 C -0.162 4.162 16 C 0.050 3.950 17 H 0.085 0.915 18 N -0.367 5.367 19 C 0.300 3.700 20 O -0.457 6.457 21 C -0.099 4.099 22 C -0.188 4.188 23 C -0.063 4.063 24 N -0.192 5.192 25 H 0.268 0.732 26 C -0.035 4.035 27 C -0.158 4.158 28 C -0.128 4.128 29 C -0.173 4.173 30 C -0.109 4.109 31 C -0.123 4.123 32 H 0.060 0.940 33 H 0.209 0.791 34 H 0.027 0.973 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.249 0.751 43 H 0.135 0.865 44 H 0.143 0.857 45 H 0.211 0.789 46 H 0.157 0.843 47 H 0.167 0.833 48 H 0.157 0.843 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.342 -26.024 -9.121 28.810 hybrid contribution 0.265 1.473 -0.039 1.497 sum 8.607 -24.551 -9.160 27.581 Atomic orbital electron populations 1.69804 1.06418 1.26045 1.59401 1.25522 0.96428 1.00905 1.03715 0.85174 0.77623 0.79657 0.77502 1.21205 1.22114 1.19836 1.19583 0.91321 0.85512 1.41299 0.91191 1.42486 1.05623 1.00825 1.89273 1.20719 0.93602 0.84896 0.97032 1.22379 0.97046 0.92367 0.99091 0.89414 1.22249 0.99853 0.97061 0.95854 1.22061 0.99630 0.93527 0.99831 1.22422 0.97078 0.97465 0.99190 1.21590 0.97830 0.93176 0.82379 0.91470 1.46029 1.36955 1.45384 1.08296 1.21245 0.78648 0.77800 0.92324 1.90682 1.49836 1.52789 1.52426 1.19975 0.98528 0.99599 0.91751 1.19825 0.94557 0.91607 1.12781 1.22045 0.90931 0.91320 1.02026 1.41703 1.09985 1.03941 1.63532 0.73238 1.18566 0.90360 0.90046 1.04524 1.20354 1.00791 0.88961 1.05711 1.21148 0.91855 1.00400 0.99405 1.20927 0.98071 0.94943 1.03401 1.20458 0.97879 0.93308 0.99275 1.19368 0.93474 0.93499 1.05923 0.93968 0.79138 0.97339 0.96430 0.92073 0.92608 0.90411 0.91014 0.90409 0.92285 0.75060 0.86500 0.85706 0.78879 0.84258 0.83337 0.84335 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.48 13.06 21.65 0.28 -58.19 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 9 N -0.74 -37.20 5.52 -343.44 -1.90 -39.10 16 10 C 0.16 6.59 5.70 86.38 0.49 7.08 16 11 C -0.09 -2.76 2.50 -9.51 -0.02 -2.78 16 12 H 0.09 2.61 8.02 -2.39 -0.02 2.60 16 13 C -0.11 -3.35 6.20 31.67 0.20 -3.16 16 14 C -0.11 -2.62 6.80 31.32 0.21 -2.41 16 15 C -0.12 -2.95 6.53 31.32 0.20 -2.75 16 16 C 0.16 4.29 2.60 46.06 0.12 4.41 16 17 H 0.07 2.21 7.58 -2.39 -0.02 2.19 16 18 N -0.71 -16.66 5.11 -437.49 -2.24 -18.90 16 19 C 0.51 13.07 7.82 87.66 0.69 13.75 16 20 O -0.58 -20.12 15.75 -3.03 -0.05 -20.17 16 21 C -0.06 -1.07 6.23 29.10 0.18 -0.88 16 22 C -0.18 -3.98 4.81 -18.62 -0.09 -4.07 16 23 C 0.06 1.18 11.73 83.00 0.97 2.15 16 24 N -0.59 -10.08 6.07 -187.60 -1.14 -11.22 16 25 H 0.43 4.45 8.96 -92.71 -0.83 3.62 16 26 C 0.07 1.56 7.28 39.03 0.28 1.84 16 27 C -0.14 -2.45 10.08 22.37 0.23 -2.23 16 28 C -0.11 -1.81 10.01 22.30 0.22 -1.59 16 29 C -0.15 -2.87 9.97 22.04 0.22 -2.65 16 30 C -0.09 -2.02 10.05 22.23 0.22 -1.80 16 31 C -0.12 -2.87 6.35 -20.20 -0.13 -2.99 16 32 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.38 19.85 7.67 -92.71 -0.71 19.14 16 34 H 0.01 0.37 7.99 -2.39 -0.02 0.35 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 1.80 7.94 -2.39 -0.02 1.78 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.08 1.67 8.04 -2.39 -0.02 1.66 16 41 H 0.06 1.51 8.14 -2.38 -0.02 1.50 16 42 H 0.41 7.61 8.53 -92.70 -0.79 6.81 16 43 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.19 2.37 8.06 -2.91 -0.02 2.34 16 46 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 47 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 48 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 49 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -76.36 404.70 0.94 -75.42 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -1.35 Total: 38.76 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 5.31 Total: -14.71 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -4.99 Total: -127.42 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.05 Total: -20.17 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -76.36 0.94 -75.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716073643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.426 kcal (2) G-P(sol) polarization free energy of solvation -76.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds