Wall clock time and date at job start Wed Apr 1 2020 00:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00184 * 2 1 4 4 H 1.48495 * 109.47562 * 270.00150 * 3 2 1 5 5 H 1.48506 * 109.46996 * 30.00291 * 3 2 1 6 6 H 1.48497 * 109.47196 * 149.99843 * 3 2 1 7 7 C 1.38812 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99667 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00483 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00321 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46884 * 179.97438 * 10 9 7 12 12 C 1.53784 * 113.60983 * 174.99335 * 11 10 9 13 13 C 1.53782 * 87.07767 * 139.98268 * 12 11 10 14 14 N 1.46506 * 113.61445 * 89.11728 * 13 12 11 15 15 C 1.34773 * 119.99969 * 156.25077 * 14 13 12 16 16 O 1.21281 * 120.00220 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00080 * 180.02562 * 15 14 13 18 18 C 1.52992 * 109.47274 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47278 * 180.02562 * 18 17 15 20 20 C 1.34238 * 126.49805 * 265.02327 * 19 18 17 21 21 N 1.36829 * 109.93052 * 179.97438 * 20 19 18 22 22 H 0.97004 * 125.06095 * 180.02562 * 21 20 19 23 23 C 1.37688 * 109.87426 * 0.02562 * 21 20 19 24 24 C 1.39123 * 133.50527 * 180.02562 * 23 21 20 25 25 C 1.37748 * 119.78036 * 179.97438 * 24 23 21 26 26 C 1.38832 * 120.66013 * 0.02562 * 25 24 23 27 27 C 1.36619 * 120.53403 * 359.97438 * 26 25 24 28 28 C 1.39634 * 119.76140 * 359.70008 * 27 26 25 29 29 C 1.53785 * 87.17382 * 334.52774 * 13 12 11 30 30 H 0.97001 * 119.99815 * 0.02562 * 1 2 3 31 31 H 0.97008 * 119.99850 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.46871 * 59.99506 * 10 9 7 33 33 H 1.09004 * 109.46696 * 299.99434 * 10 9 7 34 34 H 1.09008 * 112.84924 * 43.80604 * 11 10 9 35 35 H 1.09004 * 113.61150 * 25.43920 * 12 11 10 36 36 H 1.08996 * 113.61942 * 254.52661 * 12 11 10 37 37 H 1.08997 * 113.61710 * 219.93342 * 13 12 11 38 38 H 0.97005 * 119.99811 * 336.53130 * 14 13 12 39 39 H 1.09004 * 109.46762 * 300.00389 * 17 15 14 40 40 H 1.08998 * 109.46924 * 59.99727 * 17 15 14 41 41 H 1.09004 * 109.47116 * 299.99649 * 18 17 15 42 42 H 1.08993 * 109.47352 * 59.99893 * 18 17 15 43 43 H 1.08002 * 125.03871 * 0.02562 * 20 19 18 44 44 H 1.08005 * 120.11013 * 359.95751 * 24 23 21 45 45 H 1.07996 * 119.66904 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.73277 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.12347 * 180.02562 * 27 26 25 48 48 H 1.09003 * 113.61400 * 140.02418 * 29 13 12 49 49 H 1.08998 * 113.61245 * 270.92266 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1913 -0.0009 12 6 6.4784 -3.4589 0.1209 13 6 7.4241 -2.8198 -0.9097 14 7 8.4708 -1.9888 -0.3095 15 6 9.6179 -1.7618 -0.9796 16 8 9.7834 -2.2449 -2.0797 17 6 10.6950 -0.9075 -0.3621 18 6 11.8816 -0.8094 -1.3228 19 6 12.9588 0.0444 -0.7050 20 6 13.1473 1.3587 -0.9024 21 7 14.2227 1.7901 -0.1746 22 1 14.5528 2.7021 -0.1553 23 6 14.7665 0.7371 0.5262 24 6 15.8437 0.6219 1.3990 25 6 16.1456 -0.6014 1.9556 26 6 15.3854 -1.7233 1.6542 27 6 14.3233 -1.6329 0.7996 28 6 13.9953 -0.4013 0.2293 29 6 6.2119 -2.0169 -1.4108 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3621 0.0004 32 1 3.8490 -3.0415 -0.8918 33 1 3.8484 -3.0434 0.8882 34 1 5.9000 -1.4018 0.6952 35 1 5.9833 -4.3601 -0.2408 36 1 6.9285 -3.5880 1.1052 37 1 7.8130 -3.5265 -1.6427 38 1 8.3400 -1.6054 0.5719 39 1 10.3010 0.0903 -0.1687 40 1 11.0222 -1.3569 0.5755 41 1 12.2757 -1.8070 -1.5165 42 1 11.5541 -0.3597 -2.2601 43 1 12.5397 1.9834 -1.5404 44 1 16.4416 1.4888 1.6392 45 1 16.9824 -0.6888 2.6327 46 1 15.6356 -2.6752 2.0989 47 1 13.7361 -2.5099 0.5701 48 1 6.4469 -0.9826 -1.6622 49 1 5.6441 -2.5246 -2.1905 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717392435.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:34 Heat of formation + Delta-G solvation = 21.537585 kcal Electronic energy + Delta-G solvation = -27739.546812 eV Core-core repulsion = 23859.401502 eV Total energy + Delta-G solvation = -3880.145310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.15441 -41.21650 -39.51155 -37.78262 -36.48624 -35.06473 -34.37009 -33.16427 -31.90943 -30.22285 -29.60301 -28.70344 -26.61508 -25.73937 -24.55800 -23.70567 -22.90577 -22.64155 -21.58999 -20.46494 -20.17746 -19.45629 -18.72127 -17.91181 -17.29772 -16.97750 -16.65519 -16.47521 -16.23022 -16.01410 -15.74431 -15.36325 -15.16202 -14.97821 -14.73931 -14.69028 -14.53619 -14.18506 -13.99654 -13.51691 -13.39840 -13.27284 -13.24402 -13.01295 -12.96954 -12.71082 -12.54193 -12.51393 -12.16355 -11.92631 -11.87458 -11.70812 -11.58355 -11.38526 -11.16134 -10.91448 -10.87354 -10.45406 -9.98068 -9.27409 -9.11691 -8.52865 -8.02866 -5.35798 0.24336 0.73411 1.36408 1.41206 1.48387 1.68300 1.72745 2.23758 2.33993 2.48386 3.01997 3.28242 3.48506 3.60534 3.78292 3.85139 3.88865 3.93897 3.97839 4.12728 4.15779 4.24212 4.30927 4.40557 4.50186 4.55439 4.57788 4.72023 4.75477 4.77667 4.86968 4.91515 4.92698 4.95787 4.99582 5.01030 5.10226 5.14669 5.24655 5.27993 5.33370 5.38640 5.62194 5.70670 5.74163 5.76920 5.83171 5.88079 6.21502 6.28534 6.61539 6.74404 7.08676 7.31741 7.85938 8.05169 9.18835 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.001807 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.174958 B =15490.992433 C =16360.803405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.248 1.248 7 C -0.237 4.237 8 H 0.054 0.946 9 N -0.757 5.757 10 C 0.161 3.839 11 C -0.114 4.114 12 C -0.119 4.119 13 C 0.125 3.875 14 N -0.704 5.704 15 C 0.513 3.487 16 O -0.584 6.584 17 C -0.123 4.123 18 C -0.019 4.019 19 C -0.192 4.192 20 C 0.063 3.937 21 N -0.588 5.588 22 H 0.429 0.571 23 C 0.075 3.925 24 C -0.137 4.137 25 C -0.108 4.108 26 C -0.154 4.154 27 C -0.090 4.090 28 C -0.125 4.125 29 C -0.145 4.145 30 H 0.258 0.742 31 H 0.366 0.634 32 H 0.023 0.977 33 H 0.025 0.975 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.414 0.586 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.197 0.803 44 H 0.138 0.862 45 H 0.146 0.854 46 H 0.137 0.863 47 H 0.122 0.878 48 H 0.058 0.942 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.386 1.424 3.755 38.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.786 3.214 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.173 1.173 7 C -0.368 4.368 8 H 0.072 0.928 9 N -0.403 5.403 10 C 0.035 3.965 11 C -0.132 4.132 12 C -0.157 4.157 13 C 0.019 3.981 14 N -0.355 5.355 15 C 0.301 3.699 16 O -0.464 6.464 17 C -0.163 4.163 18 C -0.058 4.058 19 C -0.199 4.199 20 C -0.064 4.064 21 N -0.192 5.192 22 H 0.268 0.732 23 C -0.032 4.032 24 C -0.158 4.158 25 C -0.127 4.127 26 C -0.173 4.173 27 C -0.108 4.108 28 C -0.130 4.130 29 C -0.184 4.184 30 H 0.066 0.934 31 H 0.199 0.801 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.251 0.749 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.214 0.786 44 H 0.156 0.844 45 H 0.164 0.836 46 H 0.155 0.845 47 H 0.140 0.860 48 H 0.077 0.923 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 38.339 1.111 2.969 38.470 hybrid contribution -0.411 1.494 0.167 1.559 sum 37.928 2.605 3.136 38.146 Atomic orbital electron populations 1.69895 1.07206 1.26696 1.59770 1.25563 0.96189 1.01451 1.02669 0.85351 0.78735 0.79323 0.78024 1.20656 1.22186 1.17263 1.19082 0.83004 0.93443 1.41266 0.92784 1.42714 1.02313 1.04364 1.90888 1.20824 0.90491 0.87166 0.97971 1.22797 0.93129 0.99531 0.97760 1.23214 0.95286 0.97182 1.00012 1.21721 0.86736 0.93061 0.96617 1.45701 1.15997 1.52028 1.21776 1.21300 0.83140 0.80400 0.85033 1.90688 1.80727 1.52825 1.22202 1.21650 0.93141 1.00897 1.00594 1.19448 0.90926 0.98600 0.96776 1.20275 1.00598 0.94352 1.04717 1.22101 0.91172 0.95202 0.97945 1.41776 1.26973 1.10476 1.39935 0.73170 1.18537 0.97816 0.88232 0.98661 1.20348 0.96990 0.99494 0.98949 1.21151 1.00128 0.91652 0.99762 1.20932 0.96525 0.99761 1.00058 1.20485 0.97640 0.95910 0.96803 1.19404 0.98122 0.93890 1.01538 1.23502 0.97059 1.00701 0.97148 0.93362 0.80123 0.95922 0.95713 0.88671 0.87992 0.88909 0.89223 0.74889 0.87070 0.87546 0.92230 0.91091 0.78632 0.84399 0.83614 0.84518 0.85972 0.92267 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.86 13.97 21.65 0.30 -63.56 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.96 45.57 27.74 68.60 1.90 47.48 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.25 -10.45 6.52 99.48 0.65 -9.80 16 7 C -0.24 -13.74 10.47 84.03 0.88 -12.86 16 8 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 9 N -0.76 -35.38 5.41 -343.45 -1.86 -37.23 16 10 C 0.16 5.95 6.10 86.38 0.53 6.47 16 11 C -0.11 -2.99 3.64 -10.18 -0.04 -3.03 16 12 C -0.12 -2.34 7.38 31.12 0.23 -2.11 16 13 C 0.12 2.71 4.30 45.52 0.20 2.91 16 14 N -0.70 -12.88 5.26 -440.02 -2.32 -15.19 16 15 C 0.51 10.77 7.83 87.66 0.69 11.46 16 16 O -0.58 -17.36 15.60 -3.03 -0.05 -17.41 16 17 C -0.12 -1.78 5.68 29.85 0.17 -1.61 16 18 C -0.02 -0.32 5.03 29.84 0.15 -0.17 16 19 C -0.19 -3.11 5.57 -18.63 -0.10 -3.21 16 20 C 0.06 0.74 11.73 83.00 0.97 1.72 16 21 N -0.59 -6.45 6.07 -187.61 -1.14 -7.59 16 22 H 0.43 2.04 8.96 -92.71 -0.83 1.20 16 23 C 0.07 1.17 7.28 39.03 0.28 1.45 16 24 C -0.14 -1.77 10.08 22.37 0.23 -1.55 16 25 C -0.11 -1.32 10.01 22.30 0.22 -1.10 16 26 C -0.15 -2.15 9.97 22.03 0.22 -1.93 16 27 C -0.09 -1.52 10.05 22.23 0.22 -1.29 16 28 C -0.12 -2.26 6.35 -20.20 -0.13 -2.39 16 29 C -0.15 -3.81 7.45 31.21 0.23 -3.57 16 30 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.37 16.16 5.53 -92.70 -0.51 15.65 16 32 H 0.02 0.87 7.85 -2.39 -0.02 0.85 16 33 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.10 1.95 8.10 -2.38 -0.02 1.93 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 2.19 7.49 -2.39 -0.02 2.18 16 38 H 0.41 5.43 8.70 -92.70 -0.81 4.63 16 39 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 42 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 43 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 45 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 46 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 47 H 0.12 1.87 8.06 -2.91 -0.02 1.84 16 48 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.08 2.34 7.90 -2.39 -0.02 2.32 16 Total: -1.00 -79.66 405.46 1.03 -78.62 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -1.23 Total: 29.26 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 5.42 Total: -14.38 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -5.01 Total: -123.57 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.05 Total: -17.41 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.48 kcal Total: -79.66 1.03 -78.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717392435.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.159 kcal (2) G-P(sol) polarization free energy of solvation -79.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds