Wall clock time and date at job start Wed Apr 1 2020 00:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00397 * 2 1 4 4 H 1.48494 * 109.47045 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.46829 * 29.99490 * 3 2 1 6 6 H 1.48494 * 109.47456 * 149.99616 * 3 2 1 7 7 C 1.38819 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99985 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99641 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00048 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47324 * 180.02562 * 10 9 7 12 12 H 1.08994 * 112.84948 * 316.19803 * 11 10 9 13 13 C 1.53781 * 113.69357 * 87.46395 * 11 10 9 14 14 C 1.53777 * 87.08395 * 139.99146 * 13 11 10 15 15 H 1.09001 * 113.68808 * 220.00820 * 14 13 11 16 16 N 1.46496 * 113.61192 * 89.11481 * 14 13 11 17 17 C 1.34783 * 119.99931 * 107.50829 * 16 14 13 18 18 O 1.21601 * 119.99766 * 359.97438 * 17 16 14 19 19 C 1.47516 * 120.00088 * 179.97438 * 17 16 14 20 20 C 1.39800 * 120.06954 * 359.72416 * 19 17 16 21 21 C 1.37603 * 119.93080 * 179.79121 * 20 19 17 22 22 C 1.39224 * 120.07007 * 0.45919 * 21 20 19 23 23 N 1.39045 * 119.93519 * 179.76964 * 22 21 20 24 24 C 1.48223 * 111.00295 * 119.94488 * 23 22 21 25 25 C 1.51127 * 105.36017 * 144.90195 * 24 23 22 26 26 C 1.30955 * 109.45491 * 343.02480 * 25 24 23 27 27 C 1.48227 * 111.00262 * 233.58546 * 23 22 21 28 28 C 1.39218 * 120.13611 * 359.78891 * 22 21 20 29 29 C 1.37610 * 120.07005 * 359.97438 * 28 22 21 30 30 C 1.53781 * 87.08149 * 334.56726 * 14 13 11 31 31 H 0.97003 * 119.99949 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00411 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.47038 * 59.99828 * 10 9 7 34 34 H 1.09010 * 109.46736 * 300.00225 * 10 9 7 35 35 H 1.09003 * 113.61641 * 25.43884 * 13 11 10 36 36 H 1.09003 * 113.61305 * 254.54404 * 13 11 10 37 37 H 0.96997 * 120.00738 * 287.22352 * 16 14 13 38 38 H 1.08002 * 120.03409 * 359.97438 * 20 19 17 39 39 H 1.08001 * 119.97160 * 180.23165 * 21 20 19 40 40 H 1.08997 * 110.26774 * 263.87267 * 24 23 22 41 41 H 1.08994 * 110.26687 * 25.93204 * 24 23 22 42 42 H 1.07999 * 125.26603 * 163.00748 * 25 24 23 43 43 H 1.08001 * 125.27329 * 180.02562 * 26 25 24 44 44 H 1.08999 * 110.26459 * 334.07000 * 27 23 22 45 45 H 1.09004 * 110.26461 * 96.03244 * 27 23 22 46 46 H 1.08001 * 119.96944 * 179.97438 * 28 22 21 47 47 H 1.07998 * 120.03651 * 179.97438 * 29 28 22 48 48 H 1.09002 * 113.61728 * 139.97995 * 30 14 13 49 49 H 1.09002 * 113.61431 * 270.79956 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.6163 -2.1914 0.0024 12 1 5.9005 -1.4011 -0.6923 13 6 6.2114 -2.0179 1.4097 14 6 7.4245 -2.8201 0.9102 15 1 7.8138 -3.5271 1.6428 16 7 8.4709 -1.9888 0.3100 17 6 9.6285 -1.7826 0.9688 18 8 9.8041 -2.2863 2.0616 19 6 10.6823 -0.9460 0.3642 20 6 10.4842 -0.3710 -0.8946 21 6 11.4675 0.4125 -1.4540 22 6 12.6625 0.6249 -0.7719 23 7 13.6560 1.4131 -1.3419 24 6 13.9648 2.5816 -0.4839 25 6 15.4500 2.8124 -0.6411 26 6 16.0061 1.7423 -1.1514 27 6 14.9485 0.6888 -1.3866 28 6 12.8649 0.0495 0.4795 29 6 11.8835 -0.7310 1.0464 30 6 6.4785 -3.4589 -0.1203 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3622 0.0014 33 1 3.8491 -3.0423 -0.8891 34 1 3.8483 -3.0428 0.8909 35 1 5.6435 -2.5253 2.1896 36 1 6.4452 -0.9832 1.6603 37 1 8.3323 -1.5901 -0.5633 38 1 9.5592 -0.5390 -1.4261 39 1 11.3136 0.8601 -2.4247 40 1 13.4089 3.4560 -0.8223 41 1 13.7251 2.3602 0.5561 42 1 15.9718 3.7195 -0.3741 43 1 17.0578 1.6298 -1.3700 44 1 14.9858 -0.0657 -0.6008 45 1 15.0872 0.2238 -2.3627 46 1 13.7931 0.2157 1.0060 47 1 12.0413 -1.1775 2.0170 48 1 6.9281 -3.5876 -1.1049 49 1 5.9848 -4.3611 0.2407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717648278.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:25 Heat of formation + Delta-G solvation = 73.404244 kcal Electronic energy + Delta-G solvation = -28102.401822 eV Core-core repulsion = 24224.505619 eV Total energy + Delta-G solvation = -3877.896203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.20293 -40.35625 -38.86098 -37.71191 -34.75341 -33.70508 -33.02584 -31.47099 -31.12816 -29.35683 -28.98157 -27.17999 -25.61754 -24.61164 -23.55009 -22.75625 -22.09117 -21.37284 -20.64646 -19.95713 -19.29476 -18.43158 -17.65783 -17.44352 -16.46445 -16.05417 -15.47421 -15.25132 -15.17228 -14.77395 -14.51686 -14.34488 -14.24553 -14.02340 -14.00184 -13.53019 -13.47408 -13.31908 -12.85990 -12.67620 -12.61988 -12.48002 -12.37964 -12.28550 -11.87432 -11.82506 -11.71766 -11.42250 -10.89994 -10.66153 -10.26324 -10.22797 -10.17862 -10.14395 -9.91256 -9.57317 -9.48054 -9.26015 -9.03125 -8.93550 -8.86290 -7.20668 -5.75753 -3.10643 0.31700 0.92594 1.58157 2.49999 2.91006 3.26957 3.37652 3.40339 3.43164 3.45538 4.08199 4.25863 4.33059 4.40802 4.49630 4.58665 4.59968 4.66210 4.74241 4.84635 4.89992 4.94682 4.98886 4.99444 5.02225 5.08307 5.11781 5.33790 5.54648 5.56782 5.59675 5.66691 5.72864 5.78236 5.81127 5.83504 5.84357 5.89160 5.92750 5.95852 6.10197 6.10535 6.21326 6.23948 6.24744 6.53003 6.68896 6.78951 6.81809 7.30779 8.00327 8.01170 8.43621 9.23176 9.95712 10.15914 11.42810 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.002016 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.673269 B =13887.460448 C =15239.861699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.167 3.833 11 C -0.119 4.119 12 H 0.086 0.914 13 C -0.141 4.141 14 C 0.115 3.885 15 H 0.102 0.898 16 N -0.704 5.704 17 C 0.560 3.440 18 O -0.537 6.537 19 C -0.134 4.134 20 C -0.077 4.077 21 C -0.098 4.098 22 C 0.100 3.900 23 N -0.472 5.472 24 C 0.054 3.946 25 C -0.166 4.166 26 C -0.168 4.168 27 C 0.052 3.948 28 C -0.160 4.160 29 C -0.048 4.048 30 C -0.136 4.136 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.027 0.973 34 H 0.029 0.971 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.127 0.873 47 H 0.138 0.862 48 H 0.070 0.930 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.819 0.583 -2.836 34.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.040 3.960 11 C -0.138 4.138 12 H 0.104 0.896 13 C -0.180 4.180 14 C 0.010 3.990 15 H 0.120 0.880 16 N -0.355 5.355 17 C 0.348 3.652 18 O -0.415 6.415 19 C -0.137 4.137 20 C -0.096 4.096 21 C -0.117 4.117 22 C 0.005 3.995 23 N -0.193 5.193 24 C -0.072 4.072 25 C -0.185 4.185 26 C -0.187 4.187 27 C -0.073 4.073 28 C -0.180 4.180 29 C -0.067 4.067 30 C -0.174 4.174 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.236 0.764 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.085 0.915 45 H 0.110 0.890 46 H 0.145 0.855 47 H 0.156 0.844 48 H 0.089 0.911 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 34.473 0.277 -2.595 34.571 hybrid contribution 0.694 1.338 0.320 1.541 sum 35.166 1.615 -2.275 35.277 Atomic orbital electron populations 1.69704 1.05096 1.25774 1.57732 1.24681 0.95250 0.97208 1.02157 0.86531 0.79238 0.84986 0.77698 1.21136 1.21762 1.20351 1.19084 0.80758 0.94716 1.42782 0.89256 1.42700 1.03968 1.02289 1.91119 1.20617 0.87635 0.89239 0.98552 1.22821 0.96520 0.97314 0.97130 0.89607 1.23455 0.95819 1.00950 0.97730 1.21971 0.86826 0.93444 0.96736 0.87995 1.45613 1.15673 1.51951 1.22259 1.18166 0.81776 0.80374 0.84928 1.90786 1.80162 1.50299 1.20275 1.20031 0.95810 1.01750 0.96122 1.21313 0.99036 0.95338 0.93944 1.20930 0.91808 0.98406 1.00526 1.19190 0.93295 0.94967 0.92016 1.63114 1.04724 1.06338 1.45167 1.22243 0.94480 0.94355 0.96114 1.23589 0.95383 0.99254 1.00256 1.23571 0.99477 0.95286 1.00326 1.22259 0.86328 0.95860 1.02888 1.21606 1.00149 1.00025 0.96257 1.21122 0.91142 0.94951 0.99524 1.23304 0.96576 0.98598 0.98962 0.93100 0.80745 0.95486 0.95362 0.88746 0.91447 0.76377 0.84973 0.84411 0.88925 0.91575 0.84297 0.84320 0.91524 0.89002 0.85476 0.84449 0.91104 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.63 13.97 55.49 0.78 -28.85 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 22.29 27.74 -169.99 -4.71 17.58 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 7 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.76 -17.94 5.41 -59.91 -0.32 -18.27 16 10 C 0.17 3.13 6.10 -4.04 -0.02 3.10 16 11 C -0.12 -1.69 3.63 -89.81 -0.33 -2.01 16 12 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.14 -1.95 7.43 -25.92 -0.19 -2.15 16 14 C 0.12 1.37 4.32 -67.12 -0.29 1.08 16 15 H 0.10 1.29 7.46 -51.93 -0.39 0.91 16 16 N -0.70 -7.63 5.21 -54.06 -0.28 -7.91 16 17 C 0.56 6.96 7.76 -12.48 -0.10 6.86 16 18 O -0.54 -8.50 15.94 5.28 0.08 -8.42 16 19 C -0.13 -1.37 5.88 -104.95 -0.62 -1.99 16 20 C -0.08 -0.64 9.53 -39.23 -0.37 -1.01 16 21 C -0.10 -0.79 9.95 -39.45 -0.39 -1.19 16 22 C 0.10 0.83 4.90 -83.86 -0.41 0.42 16 23 N -0.47 -3.64 5.56 -171.17 -0.95 -4.59 16 24 C 0.05 0.36 6.46 -4.04 -0.03 0.33 16 25 C -0.17 -0.89 10.95 -35.80 -0.39 -1.28 16 26 C -0.17 -0.88 10.94 -35.81 -0.39 -1.27 16 27 C 0.05 0.33 6.43 -4.04 -0.03 0.30 16 28 C -0.16 -1.30 7.65 -39.45 -0.30 -1.60 16 29 C -0.05 -0.46 9.58 -39.23 -0.38 -0.84 16 30 C -0.14 -1.50 7.39 -25.92 -0.19 -1.69 16 31 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 32 H 0.36 8.36 5.53 -40.82 -0.23 8.13 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.03 0.54 7.85 -51.92 -0.41 0.14 16 35 H 0.09 1.33 7.90 -51.93 -0.41 0.92 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.40 3.44 6.72 -40.82 -0.27 3.16 16 38 H 0.13 0.82 6.39 -52.49 -0.34 0.49 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.44 6.73 -51.93 -0.35 0.09 16 42 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 44 H 0.07 0.41 6.28 -51.93 -0.33 0.08 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.13 0.85 7.01 -52.49 -0.37 0.48 16 47 H 0.14 1.33 7.64 -52.49 -0.40 0.93 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -34.71 396.43 -11.42 -46.13 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.30 Total: 8.42 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -4.68 Total: -10.07 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.78 Total: -59.62 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.71 -11.42 -46.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717648278.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.536 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds