Wall clock time and date at job start Wed Apr 1 2020 00:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00397 * 2 1 4 4 H 1.48494 * 109.47045 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.46829 * 29.99490 * 3 2 1 6 6 H 1.48494 * 109.47456 * 149.99616 * 3 2 1 7 7 C 1.38819 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99985 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99641 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00048 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47324 * 180.02562 * 10 9 7 12 12 H 1.08994 * 112.84948 * 316.19803 * 11 10 9 13 13 C 1.53781 * 113.69357 * 87.46395 * 11 10 9 14 14 C 1.53777 * 87.08395 * 139.99146 * 13 11 10 15 15 H 1.09001 * 113.68808 * 220.00820 * 14 13 11 16 16 N 1.46496 * 113.61192 * 89.11481 * 14 13 11 17 17 C 1.34783 * 119.99931 * 107.50829 * 16 14 13 18 18 O 1.21601 * 119.99766 * 359.97438 * 17 16 14 19 19 C 1.47516 * 120.00088 * 179.97438 * 17 16 14 20 20 C 1.39800 * 120.06954 * 359.72416 * 19 17 16 21 21 C 1.37603 * 119.93080 * 179.79121 * 20 19 17 22 22 C 1.39224 * 120.07007 * 0.45919 * 21 20 19 23 23 N 1.39045 * 119.93519 * 179.76964 * 22 21 20 24 24 C 1.48223 * 111.00295 * 119.94488 * 23 22 21 25 25 C 1.51127 * 105.36017 * 144.90195 * 24 23 22 26 26 C 1.30955 * 109.45491 * 343.02480 * 25 24 23 27 27 C 1.48227 * 111.00262 * 233.58546 * 23 22 21 28 28 C 1.39218 * 120.13611 * 359.78891 * 22 21 20 29 29 C 1.37610 * 120.07005 * 359.97438 * 28 22 21 30 30 C 1.53781 * 87.08149 * 334.56726 * 14 13 11 31 31 H 0.97003 * 119.99949 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00411 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.47038 * 59.99828 * 10 9 7 34 34 H 1.09010 * 109.46736 * 300.00225 * 10 9 7 35 35 H 1.09003 * 113.61641 * 25.43884 * 13 11 10 36 36 H 1.09003 * 113.61305 * 254.54404 * 13 11 10 37 37 H 0.96997 * 120.00738 * 287.22352 * 16 14 13 38 38 H 1.08002 * 120.03409 * 359.97438 * 20 19 17 39 39 H 1.08001 * 119.97160 * 180.23165 * 21 20 19 40 40 H 1.08997 * 110.26774 * 263.87267 * 24 23 22 41 41 H 1.08994 * 110.26687 * 25.93204 * 24 23 22 42 42 H 1.07999 * 125.26603 * 163.00748 * 25 24 23 43 43 H 1.08001 * 125.27329 * 180.02562 * 26 25 24 44 44 H 1.08999 * 110.26459 * 334.07000 * 27 23 22 45 45 H 1.09004 * 110.26461 * 96.03244 * 27 23 22 46 46 H 1.08001 * 119.96944 * 179.97438 * 28 22 21 47 47 H 1.07998 * 120.03651 * 179.97438 * 29 28 22 48 48 H 1.09002 * 113.61728 * 139.97995 * 30 14 13 49 49 H 1.09002 * 113.61431 * 270.79956 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.6163 -2.1914 0.0024 12 1 5.9005 -1.4011 -0.6923 13 6 6.2114 -2.0179 1.4097 14 6 7.4245 -2.8201 0.9102 15 1 7.8138 -3.5271 1.6428 16 7 8.4709 -1.9888 0.3100 17 6 9.6285 -1.7826 0.9688 18 8 9.8041 -2.2863 2.0616 19 6 10.6823 -0.9460 0.3642 20 6 10.4842 -0.3710 -0.8946 21 6 11.4675 0.4125 -1.4540 22 6 12.6625 0.6249 -0.7719 23 7 13.6560 1.4131 -1.3419 24 6 13.9648 2.5816 -0.4839 25 6 15.4500 2.8124 -0.6411 26 6 16.0061 1.7423 -1.1514 27 6 14.9485 0.6888 -1.3866 28 6 12.8649 0.0495 0.4795 29 6 11.8835 -0.7310 1.0464 30 6 6.4785 -3.4589 -0.1203 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3622 0.0014 33 1 3.8491 -3.0423 -0.8891 34 1 3.8483 -3.0428 0.8909 35 1 5.6435 -2.5253 2.1896 36 1 6.4452 -0.9832 1.6603 37 1 8.3323 -1.5901 -0.5633 38 1 9.5592 -0.5390 -1.4261 39 1 11.3136 0.8601 -2.4247 40 1 13.4089 3.4560 -0.8223 41 1 13.7251 2.3602 0.5561 42 1 15.9718 3.7195 -0.3741 43 1 17.0578 1.6298 -1.3700 44 1 14.9858 -0.0657 -0.6008 45 1 15.0872 0.2238 -2.3627 46 1 13.7931 0.2157 1.0060 47 1 12.0413 -1.1775 2.0170 48 1 6.9281 -3.5876 -1.1049 49 1 5.9848 -4.3611 0.2407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717648278.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:25 Heat of formation + Delta-G solvation = 50.512425 kcal Electronic energy + Delta-G solvation = -28103.394486 eV Core-core repulsion = 24224.505619 eV Total energy + Delta-G solvation = -3878.888867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.86073 -41.20997 -39.77979 -38.49920 -36.49696 -34.72075 -33.85771 -33.14888 -32.07173 -30.09344 -29.43671 -28.69496 -26.64020 -25.45512 -24.76375 -23.79127 -22.91748 -22.74569 -21.39990 -20.51111 -20.35324 -19.47728 -19.18592 -18.17452 -17.29258 -16.79311 -16.64153 -16.30414 -16.11709 -15.93396 -15.78961 -15.56100 -15.04465 -14.98841 -14.78505 -14.64242 -14.46358 -14.20261 -13.96257 -13.83639 -13.50926 -13.38559 -13.32900 -13.17804 -13.04803 -12.91461 -12.71609 -12.36504 -12.27193 -12.18064 -11.87700 -11.72129 -11.42208 -11.20342 -11.12554 -10.89116 -10.68224 -10.18088 -10.11358 -9.75581 -9.42663 -9.27119 -8.02831 -5.35564 -0.38691 0.28424 1.20299 1.36921 1.40874 1.48266 1.67652 2.03367 2.48271 2.69423 2.74991 3.27943 3.47292 3.55482 3.59934 3.68615 3.74873 3.84587 3.86466 3.87531 3.93444 4.10908 4.15884 4.27678 4.43070 4.46488 4.50239 4.50472 4.53243 4.65478 4.71590 4.85005 4.86901 4.89202 4.92071 4.96334 4.98943 5.08016 5.12166 5.22389 5.25349 5.29244 5.33427 5.36104 5.41529 5.57791 5.64374 5.76765 5.85660 6.20486 6.21609 6.45631 7.08864 7.11318 7.86324 8.05099 9.18861 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.002016 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.673269 B =13887.460448 C =15239.861699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.253 1.253 7 C -0.236 4.236 8 H 0.055 0.945 9 N -0.758 5.758 10 C 0.162 3.838 11 C -0.114 4.114 12 H 0.097 0.903 13 C -0.146 4.146 14 C 0.123 3.877 15 H 0.094 0.906 16 N -0.694 5.694 17 C 0.559 3.441 18 O -0.579 6.579 19 C -0.151 4.151 20 C -0.068 4.068 21 C -0.103 4.103 22 C 0.101 3.899 23 N -0.483 5.483 24 C 0.049 3.951 25 C -0.171 4.171 26 C -0.169 4.169 27 C 0.047 3.953 28 C -0.158 4.158 29 C -0.057 4.057 30 C -0.117 4.117 31 H 0.257 0.743 32 H 0.365 0.635 33 H 0.028 0.972 34 H 0.023 0.977 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.414 0.586 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.139 0.861 47 H 0.129 0.871 48 H 0.095 0.905 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.754 1.589 -4.178 38.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.178 1.178 7 C -0.367 4.367 8 H 0.073 0.927 9 N -0.403 5.403 10 C 0.036 3.964 11 C -0.133 4.133 12 H 0.115 0.885 13 C -0.185 4.185 14 C 0.018 3.982 15 H 0.112 0.888 16 N -0.345 5.345 17 C 0.348 3.652 18 O -0.461 6.461 19 C -0.154 4.154 20 C -0.087 4.087 21 C -0.121 4.121 22 C 0.006 3.994 23 N -0.204 5.204 24 C -0.077 4.077 25 C -0.190 4.190 26 C -0.187 4.187 27 C -0.078 4.078 28 C -0.178 4.178 29 C -0.077 4.077 30 C -0.155 4.155 31 H 0.066 0.934 32 H 0.198 0.802 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.252 0.748 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.174 0.826 43 H 0.176 0.824 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.157 0.843 47 H 0.147 0.853 48 H 0.113 0.887 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 37.453 1.261 -3.969 37.684 hybrid contribution -0.220 0.944 0.727 1.212 sum 37.233 2.205 -3.242 37.439 Atomic orbital electron populations 1.69894 1.07179 1.26669 1.59811 1.25552 0.96170 1.01395 1.02724 0.85361 0.78521 0.79393 0.78221 1.20022 1.22454 1.17797 1.19083 0.82995 0.93438 1.41175 0.92695 1.42724 1.02322 1.04381 1.90885 1.20819 0.90332 0.87162 0.98095 1.22770 0.93318 0.99582 0.97639 0.88520 1.23473 0.96898 1.00605 0.97480 1.21803 0.86456 0.93018 0.96935 0.88751 1.45519 1.14921 1.51466 1.22587 1.18512 0.82321 0.79949 0.84399 1.90763 1.81007 1.52128 1.22157 1.19944 0.95506 1.02753 0.97221 1.21496 0.99863 0.94374 0.93011 1.21143 0.91630 0.98306 1.01068 1.19374 0.93611 0.94488 0.91884 1.63159 1.05229 1.06686 1.45342 1.22301 0.95599 0.93948 0.95815 1.23745 0.94613 1.00126 1.00476 1.23755 1.00158 0.94726 1.00078 1.22339 0.86160 0.96255 1.03083 1.21672 1.00215 0.99539 0.96356 1.21154 0.91618 0.95494 0.99451 1.23230 0.95005 0.97275 0.99981 0.93377 0.80151 0.95447 0.95931 0.89469 0.92489 0.74813 0.82762 0.83061 0.89000 0.91841 0.82556 0.82409 0.91484 0.88772 0.84338 0.85306 0.88678 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.80 13.97 21.65 0.30 -63.50 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.96 45.71 27.74 68.60 1.90 47.62 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.25 -10.94 6.52 99.48 0.65 -10.30 16 7 C -0.24 -13.62 10.47 84.04 0.88 -12.74 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 9 N -0.76 -35.18 5.41 -343.45 -1.86 -37.03 16 10 C 0.16 5.87 6.10 86.38 0.53 6.40 16 11 C -0.11 -2.96 3.63 -10.27 -0.04 -3.00 16 12 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 13 C -0.15 -3.83 7.43 31.12 0.23 -3.60 16 14 C 0.12 2.69 4.32 45.52 0.20 2.89 16 15 H 0.09 2.29 7.46 -2.39 -0.02 2.27 16 16 N -0.69 -13.53 5.21 -443.21 -2.31 -15.84 16 17 C 0.56 13.35 7.76 86.69 0.67 14.03 16 18 O -0.58 -18.39 15.94 -4.04 -0.06 -18.46 16 19 C -0.15 -2.91 5.88 -20.08 -0.12 -3.03 16 20 C -0.07 -0.97 9.53 22.50 0.21 -0.76 16 21 C -0.10 -1.44 9.95 22.36 0.22 -1.21 16 22 C 0.10 1.52 4.90 38.47 0.19 1.70 16 23 N -0.48 -6.62 5.56 -695.46 -3.87 -10.49 16 24 C 0.05 0.57 6.46 85.44 0.55 1.12 16 25 C -0.17 -1.49 10.95 25.83 0.28 -1.21 16 26 C -0.17 -1.40 10.94 25.82 0.28 -1.12 16 27 C 0.05 0.51 6.43 85.43 0.55 1.06 16 28 C -0.16 -2.40 7.65 22.36 0.17 -2.23 16 29 C -0.06 -1.08 9.58 22.50 0.22 -0.86 16 30 C -0.12 -2.23 7.39 31.12 0.23 -2.00 16 31 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 32 H 0.37 16.12 5.53 -92.71 -0.51 15.60 16 33 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.02 0.86 7.85 -2.38 -0.02 0.84 16 35 H 0.09 2.41 7.90 -2.39 -0.02 2.39 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.41 5.77 6.72 -92.71 -0.62 5.15 16 38 H 0.15 1.39 6.39 -2.91 -0.02 1.37 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 0.76 6.73 -2.39 -0.02 0.75 16 42 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 43 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 44 H 0.07 0.72 6.28 -2.39 -0.02 0.70 16 45 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 46 H 0.14 1.70 7.01 -2.91 -0.02 1.68 16 47 H 0.13 2.57 7.64 -2.91 -0.02 2.55 16 48 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.11 1.92 8.10 -2.39 -0.02 1.91 16 Total: -1.00 -76.25 396.43 -0.39 -76.64 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.22 Total: 29.16 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 5.73 Total: -8.09 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -7.73 Total: -126.86 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.06 Total: -18.46 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.90 Total: 47.62 kcal Total: -76.25 -0.39 -76.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717648278.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.148 kcal (2) G-P(sol) polarization free energy of solvation -76.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds