Wall clock time and date at job start Wed Apr 1 2020 00:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 119.99618 * 2 1 4 4 H 1.48498 * 109.47072 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47086 * 299.99828 * 3 2 1 6 6 H 1.48495 * 109.47251 * 59.99610 * 3 2 1 7 7 C 1.38949 * 120.00604 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00457 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99547 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99462 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00357 * 359.97438 * 10 9 7 12 12 C 1.50709 * 119.99697 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47204 * 179.97438 * 12 10 9 14 14 C 1.46893 * 111.00169 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.47292 * 184.83500 * 14 13 12 16 16 H 1.08996 * 109.86947 * 54.74486 * 15 14 13 17 17 C 1.54324 * 109.87880 * 293.56870 * 15 14 13 18 18 C 1.55154 * 102.93785 * 218.38665 * 17 15 14 19 19 C 1.54688 * 101.67831 * 35.34301 * 18 17 15 20 20 N 1.47021 * 109.88067 * 175.76125 * 15 14 13 21 21 C 1.34777 * 125.64951 * 298.32197 * 20 15 14 22 22 O 1.21273 * 119.99946 * 354.92999 * 21 20 15 23 23 C 1.50703 * 119.99620 * 174.93645 * 21 20 15 24 24 F 1.39888 * 110.02264 * 58.60523 * 23 21 20 25 25 C 1.54267 * 110.03245 * 297.15937 * 23 21 20 26 26 C 1.54886 * 104.19722 * 217.11292 * 25 23 21 27 27 C 1.54881 * 102.75151 * 37.94269 * 26 25 23 28 28 C 1.53878 * 110.02699 * 180.02562 * 23 21 20 29 29 H 0.97000 * 120.00445 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00295 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46921 * 59.99543 * 12 10 9 32 32 H 1.09003 * 109.47027 * 300.00023 * 12 10 9 33 33 H 1.00904 * 110.99705 * 56.04576 * 13 12 10 34 34 H 1.09000 * 109.47408 * 64.83118 * 14 13 12 35 35 H 1.09008 * 109.47150 * 304.83255 * 14 13 12 36 36 H 1.08993 * 110.72572 * 336.75352 * 17 15 14 37 37 H 1.09001 * 110.71260 * 100.02786 * 17 15 14 38 38 H 1.09010 * 110.99967 * 153.58039 * 18 17 15 39 39 H 1.08998 * 111.01048 * 277.42462 * 18 17 15 40 40 H 1.09004 * 110.38980 * 204.35885 * 19 18 17 41 41 H 1.08996 * 110.24077 * 82.10939 * 19 18 17 42 42 H 1.09005 * 110.48289 * 335.78989 * 25 23 21 43 43 H 1.09000 * 110.48749 * 98.42462 * 25 23 21 44 44 H 1.09003 * 110.75491 * 279.62416 * 26 25 23 45 45 H 1.09006 * 110.75650 * 156.26073 * 26 25 23 46 46 H 1.08999 * 110.48676 * 203.38027 * 27 26 25 47 47 H 1.09004 * 110.48764 * 80.73370 * 27 26 25 48 48 H 1.09004 * 110.02643 * 238.56048 * 28 23 21 49 49 H 1.08997 * 110.03295 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8891 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0016 11 8 3.2104 -3.5577 0.0021 12 6 1.2440 -4.8630 0.0022 13 7 2.1987 -5.9794 0.0027 14 6 1.4985 -7.2707 0.0039 15 6 2.5190 -8.4042 0.1259 16 1 3.1431 -8.2476 1.0058 17 6 3.3974 -8.4582 -1.1418 18 6 3.5814 -9.9815 -1.3722 19 6 2.2102 -10.5348 -0.9180 20 7 1.8227 -9.6949 0.2299 21 6 0.9751 -10.0530 1.2147 22 8 0.8027 -9.3177 2.1636 23 6 0.2417 -11.3672 1.1366 24 9 1.1567 -12.4223 1.0567 25 6 -0.6902 -11.3801 -0.0927 26 6 -1.9459 -12.1473 0.3905 27 6 -2.1058 -11.6560 1.8506 28 6 -0.6590 -11.5423 2.3720 29 1 -0.4851 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6177 -4.9213 -0.8880 32 1 0.6170 -4.9201 0.8920 33 1 2.8335 -5.9119 0.7840 34 1 0.9408 -7.3826 -0.9259 35 1 0.8095 -7.3098 0.8477 36 1 2.8838 -7.9997 -1.9867 37 1 4.3588 -7.9759 -0.9655 38 1 3.7629 -10.1982 -2.4250 39 1 4.3842 -10.3767 -0.7497 40 1 2.3037 -11.5767 -0.6114 41 1 1.4800 -10.4392 -1.7216 42 1 -0.9528 -10.3628 -0.3830 43 1 -0.2185 -11.9050 -0.9235 44 1 -1.7760 -13.2236 0.3614 45 1 -2.8173 -11.8765 -0.2059 46 1 -2.6673 -12.3823 2.4381 47 1 -2.5971 -10.6832 1.8742 48 1 -0.3836 -12.4499 2.9091 49 1 -0.5652 -10.6769 3.0280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723921116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:16 Heat of formation + Delta-G solvation = -123.778441 kcal Electronic energy + Delta-G solvation = -30413.188430 eV Core-core repulsion = 26095.972520 eV Total energy + Delta-G solvation = -4317.215911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.29853 -40.57370 -38.50018 -38.08331 -36.99340 -35.26425 -33.81167 -32.07913 -31.23115 -30.41001 -29.29236 -28.89415 -26.80484 -24.96756 -23.99275 -22.75731 -21.85813 -21.45451 -20.63289 -19.53557 -19.08229 -18.04590 -17.79091 -17.03660 -16.39126 -16.29700 -15.72250 -15.58050 -15.29844 -14.83340 -14.64829 -14.49657 -14.37267 -13.98599 -13.86480 -13.70390 -13.63208 -13.47135 -13.30523 -13.04816 -12.64063 -12.26463 -12.18867 -11.99024 -11.71089 -11.69712 -11.60734 -11.57885 -11.48068 -11.36088 -11.26276 -11.08470 -11.00678 -10.88838 -10.85951 -10.33012 -10.20885 -9.96868 -9.50188 -8.97850 -8.42705 -8.04508 -7.93945 -6.39891 -3.80643 2.12522 2.47261 3.17698 3.28026 3.35488 3.67831 3.81591 3.93257 3.96919 4.13123 4.18577 4.28921 4.46715 4.51552 4.69857 4.72009 4.80516 4.90061 4.92658 4.99836 5.10641 5.13437 5.16815 5.20969 5.27089 5.31200 5.38233 5.44854 5.54057 5.58506 5.60067 5.65715 5.70709 5.79784 5.81509 5.83908 5.88229 5.91502 6.00653 6.13354 6.17425 6.29457 7.11280 7.21657 7.57162 7.63694 7.72798 8.08478 8.63270 9.19784 9.56481 10.07835 10.78026 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.002154 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.747517 B =12998.733125 C =13984.378389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.662 5.662 14 C 0.050 3.950 15 C 0.137 3.863 16 H 0.078 0.922 17 C -0.113 4.113 18 C -0.136 4.136 19 C 0.091 3.909 20 N -0.603 5.603 21 C 0.517 3.483 22 O -0.516 6.516 23 C 0.107 3.893 24 F -0.192 7.192 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.144 4.144 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.349 0.651 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 -28.088 -1.917 28.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.467 6.467 12 C -0.081 4.081 13 N -0.295 5.295 14 C -0.080 4.080 15 C 0.034 3.966 16 H 0.096 0.904 17 C -0.151 4.151 18 C -0.174 4.174 19 C -0.032 4.032 20 N -0.337 5.337 21 C 0.303 3.697 22 O -0.392 6.392 23 C 0.085 3.915 24 F -0.172 7.172 25 C -0.179 4.179 26 C -0.161 4.161 27 C -0.160 4.160 28 C -0.182 4.182 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.103 0.897 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.951 -27.555 -2.018 27.786 hybrid contribution -0.518 0.754 0.847 1.246 sum -3.469 -26.802 -1.171 27.050 Atomic orbital electron populations 1.69620 1.05948 1.28031 1.50772 1.25267 0.95638 0.99734 0.97394 0.85799 0.79712 0.81141 0.77684 1.19211 1.20756 1.20778 1.19755 0.93392 0.82209 1.47383 0.87858 1.41871 1.09214 1.04612 1.64427 1.19783 0.88359 0.84681 0.84364 1.90515 1.13734 1.87076 1.55379 1.21663 0.94339 0.90864 1.01230 1.60086 1.18719 0.99524 1.51155 1.22269 0.95618 0.88957 1.01194 1.21630 0.93170 0.82149 0.99642 0.90368 1.22603 1.00615 0.95144 0.96751 1.22799 0.96077 0.96312 1.02211 1.22531 0.96898 0.95572 0.88195 1.48508 1.44357 1.16594 1.24269 1.20367 0.79367 0.88331 0.81668 1.90729 1.63250 1.53744 1.31451 1.21794 0.87991 0.81988 0.99721 1.92873 1.68684 1.58263 1.97382 1.23006 0.96041 1.02946 0.95885 1.22530 0.97129 1.00126 0.96317 1.22355 0.95695 1.02108 0.95887 1.22759 0.94128 1.05270 0.96033 0.91940 0.77464 0.89687 0.93812 0.83164 0.91066 0.94236 0.89651 0.89282 0.89538 0.90614 0.89708 0.91044 0.89413 0.89325 0.90745 0.90421 0.90642 0.90793 0.89731 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 10 C 0.44 10.70 7.82 -10.98 -0.09 10.61 16 11 O -0.58 -16.04 15.78 5.55 0.09 -15.95 16 12 C 0.05 0.96 6.16 -4.97 -0.03 0.93 16 13 N -0.66 -11.06 5.94 -115.05 -0.68 -11.74 16 14 C 0.05 0.69 5.10 -3.82 -0.02 0.67 16 15 C 0.14 1.63 2.99 -66.95 -0.20 1.43 16 16 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 17 C -0.11 -1.12 6.27 -24.90 -0.16 -1.27 16 18 C -0.14 -0.99 7.07 -24.70 -0.17 -1.17 16 19 C 0.09 0.70 5.64 -2.65 -0.01 0.69 16 20 N -0.60 -6.51 3.06 -163.15 -0.50 -7.00 16 21 C 0.52 6.31 6.52 -10.98 -0.07 6.24 16 22 O -0.52 -8.05 14.39 5.56 0.08 -7.97 16 23 C 0.11 1.01 1.13 -90.65 -0.10 0.90 16 24 F -0.19 -1.90 15.00 2.25 0.03 -1.87 16 25 C -0.14 -0.99 5.27 -25.07 -0.13 -1.13 16 26 C -0.12 -0.73 6.91 -24.74 -0.17 -0.90 16 27 C -0.12 -0.83 6.83 -25.10 -0.17 -1.00 16 28 C -0.14 -1.27 6.25 -25.64 -0.16 -1.43 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.35 6.14 8.36 -39.29 -0.33 5.82 16 34 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 35 H 0.04 0.61 6.90 -51.92 -0.36 0.25 16 36 H 0.08 0.88 7.78 -51.93 -0.40 0.48 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.62 6.35 -51.93 -0.33 0.29 16 41 H 0.07 0.46 8.04 -51.93 -0.42 0.04 16 42 H 0.09 0.66 7.85 -51.93 -0.41 0.25 16 43 H 0.09 0.51 7.77 -51.93 -0.40 0.11 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.68 8.02 -51.93 -0.42 0.26 16 49 H 0.10 1.12 6.39 -51.93 -0.33 0.79 16 LS Contribution 392.77 15.07 5.92 5.92 Total: -1.00 -33.02 392.77 -9.03 -42.05 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -7.87 Total: 12.69 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -1.73 Total: 6.47 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.52 Total: -57.61 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.17 Total: -23.92 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.03 Total: -1.87 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.02 -9.03 -42.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723921116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.730 kcal (2) G-P(sol) polarization free energy of solvation -33.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds