Wall clock time and date at job start Wed Apr 1 2020 00:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 119.99618 * 2 1 4 4 H 1.48498 * 109.47072 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47086 * 299.99828 * 3 2 1 6 6 H 1.48495 * 109.47251 * 59.99610 * 3 2 1 7 7 C 1.38949 * 120.00604 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00457 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99547 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99462 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00357 * 359.97438 * 10 9 7 12 12 C 1.50709 * 119.99697 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47204 * 179.97438 * 12 10 9 14 14 C 1.46893 * 111.00169 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.47292 * 184.83500 * 14 13 12 16 16 H 1.08996 * 109.86947 * 54.74486 * 15 14 13 17 17 C 1.54324 * 109.87880 * 293.56870 * 15 14 13 18 18 C 1.55154 * 102.93785 * 218.38665 * 17 15 14 19 19 C 1.54688 * 101.67831 * 35.34301 * 18 17 15 20 20 N 1.47021 * 109.88067 * 175.76125 * 15 14 13 21 21 C 1.34777 * 125.64951 * 298.32197 * 20 15 14 22 22 O 1.21273 * 119.99946 * 354.92999 * 21 20 15 23 23 C 1.50703 * 119.99620 * 174.93645 * 21 20 15 24 24 F 1.39888 * 110.02264 * 58.60523 * 23 21 20 25 25 C 1.54267 * 110.03245 * 297.15937 * 23 21 20 26 26 C 1.54886 * 104.19722 * 217.11292 * 25 23 21 27 27 C 1.54881 * 102.75151 * 37.94269 * 26 25 23 28 28 C 1.53878 * 110.02699 * 180.02562 * 23 21 20 29 29 H 0.97000 * 120.00445 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00295 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46921 * 59.99543 * 12 10 9 32 32 H 1.09003 * 109.47027 * 300.00023 * 12 10 9 33 33 H 1.00904 * 110.99705 * 56.04576 * 13 12 10 34 34 H 1.09000 * 109.47408 * 64.83118 * 14 13 12 35 35 H 1.09008 * 109.47150 * 304.83255 * 14 13 12 36 36 H 1.08993 * 110.72572 * 336.75352 * 17 15 14 37 37 H 1.09001 * 110.71260 * 100.02786 * 17 15 14 38 38 H 1.09010 * 110.99967 * 153.58039 * 18 17 15 39 39 H 1.08998 * 111.01048 * 277.42462 * 18 17 15 40 40 H 1.09004 * 110.38980 * 204.35885 * 19 18 17 41 41 H 1.08996 * 110.24077 * 82.10939 * 19 18 17 42 42 H 1.09005 * 110.48289 * 335.78989 * 25 23 21 43 43 H 1.09000 * 110.48749 * 98.42462 * 25 23 21 44 44 H 1.09003 * 110.75491 * 279.62416 * 26 25 23 45 45 H 1.09006 * 110.75650 * 156.26073 * 26 25 23 46 46 H 1.08999 * 110.48676 * 203.38027 * 27 26 25 47 47 H 1.09004 * 110.48764 * 80.73370 * 27 26 25 48 48 H 1.09004 * 110.02643 * 238.56048 * 28 23 21 49 49 H 1.08997 * 110.03295 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8891 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0016 11 8 3.2104 -3.5577 0.0021 12 6 1.2440 -4.8630 0.0022 13 7 2.1987 -5.9794 0.0027 14 6 1.4985 -7.2707 0.0039 15 6 2.5190 -8.4042 0.1259 16 1 3.1431 -8.2476 1.0058 17 6 3.3974 -8.4582 -1.1418 18 6 3.5814 -9.9815 -1.3722 19 6 2.2102 -10.5348 -0.9180 20 7 1.8227 -9.6949 0.2299 21 6 0.9751 -10.0530 1.2147 22 8 0.8027 -9.3177 2.1636 23 6 0.2417 -11.3672 1.1366 24 9 1.1567 -12.4223 1.0567 25 6 -0.6902 -11.3801 -0.0927 26 6 -1.9459 -12.1473 0.3905 27 6 -2.1058 -11.6560 1.8506 28 6 -0.6590 -11.5423 2.3720 29 1 -0.4851 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6177 -4.9213 -0.8880 32 1 0.6170 -4.9201 0.8920 33 1 2.8335 -5.9119 0.7840 34 1 0.9408 -7.3826 -0.9259 35 1 0.8095 -7.3098 0.8477 36 1 2.8838 -7.9997 -1.9867 37 1 4.3588 -7.9759 -0.9655 38 1 3.7629 -10.1982 -2.4250 39 1 4.3842 -10.3767 -0.7497 40 1 2.3037 -11.5767 -0.6114 41 1 1.4800 -10.4392 -1.7216 42 1 -0.9528 -10.3628 -0.3830 43 1 -0.2185 -11.9050 -0.9235 44 1 -1.7760 -13.2236 0.3614 45 1 -2.8173 -11.8765 -0.2059 46 1 -2.6673 -12.3823 2.4381 47 1 -2.5971 -10.6832 1.8742 48 1 -0.3836 -12.4499 2.9091 49 1 -0.5652 -10.6769 3.0280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723921116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:15 Heat of formation + Delta-G solvation = -146.552944 kcal Electronic energy + Delta-G solvation = -30414.176007 eV Core-core repulsion = 26095.972520 eV Total energy + Delta-G solvation = -4318.203487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.05850 -41.47460 -40.19035 -39.15862 -37.72774 -36.67888 -35.81725 -33.31146 -32.91216 -31.48252 -29.88739 -29.61604 -28.26866 -26.44545 -25.23291 -23.93124 -22.54868 -22.02057 -21.49814 -21.11474 -20.22111 -19.89717 -18.81715 -18.02880 -17.69968 -17.19984 -16.96243 -16.57363 -16.46333 -16.34256 -16.01875 -15.52198 -15.39312 -15.19650 -15.16726 -14.95338 -14.62841 -14.35521 -14.12823 -14.06399 -13.91682 -13.51904 -13.44778 -13.22453 -12.98822 -12.87903 -12.73352 -12.59653 -12.42615 -12.27564 -12.16237 -12.12075 -11.98537 -11.90923 -11.87875 -11.61862 -11.53993 -11.53478 -10.88497 -10.40775 -10.04349 -9.85748 -9.46323 -8.48656 -5.97813 1.20224 1.35582 1.40885 1.55356 1.61134 2.01054 2.27831 2.82783 3.00998 3.18050 3.18895 3.31229 3.45794 3.54620 3.63604 3.71194 3.83679 4.15334 4.17525 4.20459 4.23916 4.27481 4.32692 4.35575 4.39127 4.44881 4.49879 4.59508 4.63222 4.65602 4.77329 4.80459 4.93570 4.96263 4.98297 5.06024 5.11073 5.13344 5.18211 5.28338 5.34905 5.37330 5.39317 5.76850 6.01920 6.21915 6.28873 6.56800 6.80005 7.09803 7.52421 8.07181 8.69135 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.002154 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.747517 B =12998.733125 C =13984.378389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.620 6.620 12 C 0.066 3.934 13 N -0.665 5.665 14 C 0.061 3.939 15 C 0.137 3.863 16 H 0.057 0.943 17 C -0.110 4.110 18 C -0.125 4.125 19 C 0.087 3.913 20 N -0.601 5.601 21 C 0.507 3.493 22 O -0.562 6.562 23 C 0.109 3.891 24 F -0.193 7.193 25 C -0.137 4.137 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.148 4.148 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.107 0.893 32 H 0.056 0.944 33 H 0.341 0.659 34 H 0.085 0.915 35 H 0.021 0.979 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 -29.574 -3.584 30.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.506 6.506 12 C -0.067 4.067 13 N -0.297 5.297 14 C -0.069 4.069 15 C 0.033 3.967 16 H 0.075 0.925 17 C -0.148 4.148 18 C -0.163 4.163 19 C -0.034 4.034 20 N -0.333 5.333 21 C 0.294 3.706 22 O -0.440 6.440 23 C 0.087 3.913 24 F -0.174 7.174 25 C -0.175 4.175 26 C -0.155 4.155 27 C -0.159 4.159 28 C -0.186 4.186 29 H 0.088 0.912 30 H 0.230 0.770 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.160 0.840 34 H 0.103 0.897 35 H 0.039 0.961 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.126 0.874 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.085 0.915 48 H 0.109 0.891 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.789 -29.079 -3.717 29.559 hybrid contribution -0.241 1.184 1.398 1.848 sum -4.030 -27.895 -2.318 28.280 Atomic orbital electron populations 1.69680 1.06899 1.29313 1.50309 1.26082 0.96571 1.02525 0.96202 0.84844 0.78032 0.76923 0.78369 1.19715 1.19426 1.19629 1.19719 0.92735 0.83917 1.49901 0.90204 1.41935 1.09339 1.04741 1.64968 1.20716 0.88213 0.85972 0.82353 1.90484 1.15657 1.87894 1.56611 1.21527 0.94017 0.88349 1.02811 1.60110 1.18562 1.00242 1.50792 1.22232 0.95637 0.88069 1.00990 1.21547 0.92810 0.82359 1.00002 0.92518 1.22545 0.99578 0.97301 0.95344 1.22803 0.95820 0.93813 1.03873 1.22795 0.97660 0.95442 0.87542 1.48623 1.43519 1.16417 1.24779 1.20991 0.79288 0.89090 0.81192 1.90706 1.64760 1.55357 1.33219 1.21845 0.87788 0.80301 1.01317 1.92866 1.68940 1.58087 1.97480 1.23044 0.96046 1.03225 0.95180 1.22548 0.96998 1.00556 0.95378 1.22368 0.94171 1.02315 0.97017 1.22777 0.95708 1.04337 0.95748 0.91247 0.77017 0.87461 0.92599 0.84048 0.89670 0.96055 0.89658 0.90110 0.86882 0.90615 0.88812 0.88850 0.89901 0.87420 0.89607 0.88939 0.89114 0.91546 0.89105 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.50 13.05 21.66 0.28 -50.22 16 2 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 3 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 8 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.57 -30.25 5.29 -306.98 -1.62 -31.87 16 10 C 0.44 21.67 7.82 87.66 0.69 22.36 16 11 O -0.62 -35.11 15.78 -3.05 -0.05 -35.15 16 12 C 0.07 2.41 6.16 85.56 0.53 2.94 16 13 N -0.67 -22.39 5.94 -517.92 -3.08 -25.46 16 14 C 0.06 1.66 5.10 86.31 0.44 2.10 16 15 C 0.14 3.26 2.99 45.34 0.14 3.39 16 16 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 17 C -0.11 -2.04 6.27 31.78 0.20 -1.84 16 18 C -0.13 -1.52 7.07 31.91 0.23 -1.30 16 19 C 0.09 1.13 5.64 86.78 0.49 1.62 16 20 N -0.60 -12.53 3.06 -788.49 -2.41 -14.94 16 21 C 0.51 12.46 6.52 87.66 0.57 13.03 16 22 O -0.56 -18.43 14.39 -3.01 -0.04 -18.48 16 23 C 0.11 1.95 1.13 -10.81 -0.01 1.94 16 24 F -0.19 -3.54 15.00 44.97 0.67 -2.86 16 25 C -0.14 -1.62 5.27 31.67 0.17 -1.45 16 26 C -0.12 -1.06 6.91 31.88 0.22 -0.84 16 27 C -0.12 -1.48 6.83 31.65 0.22 -1.27 16 28 C -0.15 -2.59 6.25 31.30 0.20 -2.39 16 29 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.40 19.92 7.90 -92.71 -0.73 19.19 16 31 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.34 12.44 8.36 -89.69 -0.75 11.69 16 34 H 0.08 2.10 8.04 -2.39 -0.02 2.08 16 35 H 0.02 0.67 6.90 -2.38 -0.02 0.66 16 36 H 0.08 1.61 7.78 -2.39 -0.02 1.60 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.11 6.35 -2.38 -0.02 1.09 16 41 H 0.09 0.86 8.04 -2.39 -0.02 0.84 16 42 H 0.08 1.08 7.85 -2.38 -0.02 1.06 16 43 H 0.11 0.86 7.77 -2.39 -0.02 0.84 16 44 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 48 H 0.09 1.42 8.02 -2.38 -0.02 1.40 16 49 H 0.08 1.79 6.39 -2.39 -0.02 1.78 16 Total: -1.00 -73.23 392.77 0.61 -72.62 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -0.51 Total: 41.35 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 5.34 Total: 19.51 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -6.83 Total: -122.49 kcal Atomic # 8 Polarization: -53.54 SS G_CDS: -0.09 Total: -53.63 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.67 Total: -2.86 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -73.23 0.61 -72.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723921116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.936 kcal (2) G-P(sol) polarization free energy of solvation -73.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds