Wall clock time and date at job start Wed Apr 1 2020 01:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48499 * 109.47210 * 270.00011 * 3 2 1 5 5 H 1.48503 * 109.47035 * 30.00211 * 3 2 1 6 6 H 1.48503 * 109.47064 * 149.99899 * 3 2 1 7 7 C 1.38954 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00153 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99640 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99524 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99532 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46530 * 179.97438 * 12 10 9 14 14 C 1.46908 * 110.99744 * 180.02562 * 13 12 10 15 15 H 1.08998 * 112.84318 * 336.19807 * 14 13 12 16 16 C 1.53782 * 113.61525 * 107.50071 * 14 13 12 17 17 C 1.53783 * 87.07953 * 139.98193 * 16 14 13 18 18 H 1.08999 * 113.68767 * 220.01224 * 17 16 14 19 19 N 1.46500 * 113.61429 * 89.11742 * 17 16 14 20 20 C 1.34774 * 119.99881 * 107.50136 * 19 17 16 21 21 O 1.21285 * 120.00019 * 0.02562 * 20 19 17 22 22 C 1.50699 * 119.99942 * 180.02562 * 20 19 17 23 23 H 1.09002 * 109.46959 * 299.99950 * 22 20 19 24 24 C 1.53000 * 109.47083 * 179.97438 * 22 20 19 25 25 C 1.53002 * 109.47233 * 179.97438 * 24 22 20 26 26 C 1.52997 * 109.46817 * 60.00194 * 25 24 22 27 27 C 1.53005 * 109.47452 * 300.00239 * 26 25 24 28 28 H 1.09000 * 109.47360 * 180.02562 * 27 26 25 29 29 F 1.39905 * 109.46739 * 299.99764 * 27 26 25 30 30 C 1.52997 * 109.47078 * 59.99862 * 22 20 19 31 31 C 1.53771 * 113.61390 * 205.00006 * 14 13 12 32 32 H 0.97008 * 119.99975 * 359.97438 * 1 2 3 33 33 H 0.96993 * 120.00293 * 359.97438 * 9 7 2 34 34 H 1.08997 * 109.47078 * 59.99795 * 12 10 9 35 35 H 1.09000 * 109.46863 * 299.99523 * 12 10 9 36 36 H 1.00898 * 111.00404 * 56.04900 * 13 12 10 37 37 H 1.09000 * 113.61291 * 25.43252 * 16 14 13 38 38 H 1.08998 * 113.61574 * 254.53607 * 16 14 13 39 39 H 0.96998 * 119.99994 * 287.50414 * 19 17 16 40 40 H 1.08992 * 109.47399 * 299.99938 * 24 22 20 41 41 H 1.09004 * 109.46724 * 60.00424 * 24 22 20 42 42 H 1.08993 * 109.47662 * 180.02562 * 25 24 22 43 43 H 1.09002 * 109.47075 * 300.00932 * 25 24 22 44 44 H 1.09002 * 109.47153 * 60.00231 * 26 25 24 45 45 H 1.09001 * 109.47289 * 180.02562 * 26 25 24 46 46 H 1.08996 * 109.47853 * 300.00179 * 30 22 20 47 47 H 1.09002 * 109.47153 * 60.00207 * 30 22 20 48 48 H 1.09001 * 113.61639 * 105.46911 * 31 14 13 49 49 H 1.09003 * 113.69463 * 334.57947 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3706 0.0000 11 8 3.4471 -3.4210 0.0009 12 6 5.5607 -2.3706 0.0000 13 7 6.0502 -3.7556 0.0006 14 6 7.5188 -3.7949 0.0013 15 1 7.9665 -2.8876 -0.4042 16 6 8.1227 -4.2345 1.3455 17 6 9.1482 -5.0410 0.5313 18 1 9.3750 -6.0181 0.9578 19 7 10.3502 -4.2795 0.1825 20 6 11.5186 -4.5448 0.7996 21 8 11.5751 -5.4141 1.6434 22 6 12.7549 -3.7611 0.4412 23 1 12.9785 -3.8991 -0.6167 24 6 13.9340 -4.2563 1.2811 25 6 15.1893 -3.4611 0.9168 26 6 14.9515 -1.9760 1.1974 27 6 13.7723 -1.4807 0.3575 28 1 13.6032 -0.4225 0.5571 29 9 14.0595 -1.6586 -1.0001 30 6 12.5169 -2.2762 0.7227 31 6 8.1007 -5.0880 -0.5936 32 1 -0.4850 0.8401 0.0004 33 1 3.8647 -0.3634 -0.0011 34 1 5.9240 -1.8567 0.8899 35 1 5.9239 -1.8568 -0.8900 36 1 5.6748 -4.2723 -0.7805 37 1 7.4541 -4.8547 1.9425 38 1 8.5634 -3.4161 1.9147 39 1 10.3050 -3.5845 -0.4926 40 1 13.7101 -4.1180 2.3388 41 1 14.1037 -5.3143 1.0809 42 1 16.0294 -3.8142 1.5148 43 1 15.4130 -3.5997 -0.1410 44 1 14.7278 -1.8373 2.2551 45 1 15.8456 -1.4094 0.9374 46 1 11.6768 -1.9230 0.1248 47 1 12.2932 -2.1382 1.7806 48 1 8.5237 -4.9587 -1.5898 49 1 7.4270 -5.9424 -0.5275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731444585.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:23 Heat of formation + Delta-G solvation = -114.889479 kcal Electronic energy + Delta-G solvation = -29394.165597 eV Core-core repulsion = 25077.335141 eV Total energy + Delta-G solvation = -4316.830456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -48.13412 -40.74189 -39.20914 -38.27060 -37.32137 -34.70477 -33.91362 -32.82651 -31.67625 -31.31839 -30.87282 -27.15754 -25.87281 -24.91840 -23.98802 -23.23968 -22.66380 -21.16088 -20.07851 -19.63784 -19.29670 -18.33368 -17.85837 -16.80960 -16.31202 -16.13204 -15.91293 -15.90214 -15.44996 -15.34549 -15.10425 -14.71728 -14.64679 -14.34071 -14.12683 -13.84118 -13.66651 -13.21372 -13.09289 -12.88218 -12.70771 -12.58410 -12.40575 -12.21931 -12.12996 -12.05846 -11.99074 -11.71555 -11.49976 -11.26057 -11.19097 -11.00476 -10.70891 -10.64818 -10.62676 -10.57794 -9.99385 -9.98646 -9.59162 -9.31019 -8.59444 -8.22663 -8.16971 -6.32632 -3.84089 2.29021 2.78176 3.00715 3.04427 3.13155 3.72148 3.88305 3.92299 4.07270 4.07852 4.12728 4.22702 4.32537 4.38832 4.49898 4.53407 4.58956 4.73124 4.76905 4.83257 4.84802 4.92393 4.98545 5.01784 5.19939 5.29517 5.33393 5.41390 5.43926 5.52180 5.56321 5.59843 5.63744 5.67319 5.73044 5.74206 5.78405 5.88789 5.90716 5.95499 6.01407 6.35987 7.12111 7.17019 7.54207 7.56941 7.90870 8.12948 8.58074 8.93384 9.40751 9.80917 10.80477 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.001949 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.019419 B =14361.784531 C =15743.088124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.449 3.551 11 O -0.564 6.564 12 C 0.048 3.952 13 N -0.655 5.655 14 C 0.059 3.941 15 H 0.069 0.931 16 C -0.135 4.135 17 C 0.117 3.883 18 H 0.105 0.895 19 N -0.712 5.712 20 C 0.521 3.479 21 O -0.536 6.536 22 C -0.107 4.107 23 H 0.103 0.897 24 C -0.100 4.100 25 C -0.121 4.121 26 C -0.148 4.148 27 C 0.094 3.906 28 H 0.087 0.913 29 F -0.211 7.211 30 C -0.138 4.138 31 C -0.148 4.148 32 H 0.273 0.727 33 H 0.370 0.630 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.352 0.648 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.400 0.600 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.071 0.929 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.877 -2.208 -0.444 32.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.446 6.446 12 C -0.085 4.085 13 N -0.288 5.288 14 C -0.052 4.052 15 H 0.086 0.914 16 C -0.174 4.174 17 C 0.011 3.989 18 H 0.123 0.877 19 N -0.363 5.363 20 C 0.307 3.693 21 O -0.412 6.412 22 C -0.128 4.128 23 H 0.121 0.879 24 C -0.138 4.138 25 C -0.159 4.159 26 C -0.186 4.186 27 C 0.057 3.943 28 H 0.105 0.895 29 F -0.192 7.192 30 C -0.176 4.176 31 C -0.186 4.186 32 H 0.084 0.916 33 H 0.203 0.797 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.173 0.827 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.234 0.766 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.090 0.910 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 32.224 -3.516 0.810 32.426 hybrid contribution 0.593 2.210 -1.334 2.648 sum 32.817 -1.306 -0.524 32.847 Atomic orbital electron populations 1.69621 1.05637 1.27494 1.49326 1.25047 0.95508 0.97987 0.97675 0.86666 0.79802 0.84055 0.78822 1.19676 1.20149 1.19500 1.19436 0.79249 0.96636 1.48075 0.86277 1.42212 1.07543 1.06155 1.67107 1.19726 0.88221 0.84566 0.84005 1.90566 1.69430 1.30936 1.53679 1.21769 0.95018 0.90665 1.01088 1.60205 1.05033 1.12548 1.50999 1.23109 0.88438 0.96477 0.97145 0.91366 1.23542 0.96808 1.00189 0.96877 1.21782 0.83502 0.96471 0.97116 0.87677 1.45762 1.08605 1.39428 1.42506 1.20580 0.84300 0.83450 0.80989 1.90714 1.85449 1.32745 1.32249 1.21323 0.93787 0.94745 1.02976 0.87926 1.21375 0.92322 1.00154 0.99983 1.21536 0.97947 0.93977 1.02432 1.22170 0.98119 0.97530 1.00775 1.21550 0.95335 1.00514 0.76861 0.89461 1.92811 1.94801 1.96967 1.34665 1.22155 0.97941 0.93588 1.03943 1.23608 0.97720 0.99429 0.97892 0.91606 0.79724 0.89580 0.93827 0.82692 0.88039 0.91612 0.76587 0.90893 0.90776 0.90985 0.91239 0.89903 0.90615 0.90209 0.89282 0.91043 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 7 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 9 N -0.59 -13.97 5.09 -10.96 -0.06 -14.03 16 10 C 0.45 10.09 7.82 -10.98 -0.09 10.00 16 11 O -0.56 -15.07 15.78 5.55 0.09 -14.98 16 12 C 0.05 0.76 6.01 -4.97 -0.03 0.73 16 13 N -0.66 -9.62 6.18 -107.13 -0.66 -10.28 16 14 C 0.06 0.62 4.02 -66.90 -0.27 0.35 16 15 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 16 C -0.13 -1.43 7.68 -25.92 -0.20 -1.63 16 17 C 0.12 1.10 4.32 -67.12 -0.29 0.81 16 18 H 0.11 1.14 7.46 -51.93 -0.39 0.75 16 19 N -0.71 -5.60 5.15 -53.02 -0.27 -5.88 16 20 C 0.52 4.84 7.15 -10.99 -0.08 4.76 16 21 O -0.54 -7.09 15.58 5.55 0.09 -7.00 16 22 C -0.11 -0.71 2.40 -91.77 -0.22 -0.93 16 23 H 0.10 0.64 7.80 -51.93 -0.41 0.23 16 24 C -0.10 -0.67 4.49 -26.73 -0.12 -0.79 16 25 C -0.12 -0.63 5.80 -26.73 -0.16 -0.78 16 26 C -0.15 -0.65 5.72 -26.73 -0.15 -0.80 16 27 C 0.09 0.47 4.13 -26.70 -0.11 0.36 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 F -0.21 -1.57 16.04 2.25 0.04 -1.53 16 30 C -0.14 -0.71 4.90 -26.71 -0.13 -0.84 16 31 C -0.15 -1.31 7.40 -25.92 -0.19 -1.50 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.04 0.60 8.13 -51.93 -0.42 0.18 16 36 H 0.35 5.34 8.25 -39.29 -0.32 5.02 16 37 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.40 2.29 8.12 -40.82 -0.33 1.96 16 40 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 41 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.39 7.80 -51.93 -0.41 -0.01 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.08 0.36 7.56 -51.93 -0.39 -0.04 16 47 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 395.84 15.07 5.97 5.97 Total: -1.00 -34.56 395.84 -8.97 -43.54 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -7.94 Total: 12.62 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.28 Total: 1.98 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.22 Total: -55.08 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.17 Total: -21.98 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.56 -8.97 -43.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731444585.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.352 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds