Wall clock time and date at job start Wed Apr 1 2020 01:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48499 * 109.47210 * 270.00011 * 3 2 1 5 5 H 1.48503 * 109.47035 * 30.00211 * 3 2 1 6 6 H 1.48503 * 109.47064 * 149.99899 * 3 2 1 7 7 C 1.38954 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00153 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99640 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99524 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99532 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46530 * 179.97438 * 12 10 9 14 14 C 1.46908 * 110.99744 * 180.02562 * 13 12 10 15 15 H 1.08998 * 112.84318 * 336.19807 * 14 13 12 16 16 C 1.53782 * 113.61525 * 107.50071 * 14 13 12 17 17 C 1.53783 * 87.07953 * 139.98193 * 16 14 13 18 18 H 1.08999 * 113.68767 * 220.01224 * 17 16 14 19 19 N 1.46500 * 113.61429 * 89.11742 * 17 16 14 20 20 C 1.34774 * 119.99881 * 107.50136 * 19 17 16 21 21 O 1.21285 * 120.00019 * 0.02562 * 20 19 17 22 22 C 1.50699 * 119.99942 * 180.02562 * 20 19 17 23 23 H 1.09002 * 109.46959 * 299.99950 * 22 20 19 24 24 C 1.53000 * 109.47083 * 179.97438 * 22 20 19 25 25 C 1.53002 * 109.47233 * 179.97438 * 24 22 20 26 26 C 1.52997 * 109.46817 * 60.00194 * 25 24 22 27 27 C 1.53005 * 109.47452 * 300.00239 * 26 25 24 28 28 H 1.09000 * 109.47360 * 180.02562 * 27 26 25 29 29 F 1.39905 * 109.46739 * 299.99764 * 27 26 25 30 30 C 1.52997 * 109.47078 * 59.99862 * 22 20 19 31 31 C 1.53771 * 113.61390 * 205.00006 * 14 13 12 32 32 H 0.97008 * 119.99975 * 359.97438 * 1 2 3 33 33 H 0.96993 * 120.00293 * 359.97438 * 9 7 2 34 34 H 1.08997 * 109.47078 * 59.99795 * 12 10 9 35 35 H 1.09000 * 109.46863 * 299.99523 * 12 10 9 36 36 H 1.00898 * 111.00404 * 56.04900 * 13 12 10 37 37 H 1.09000 * 113.61291 * 25.43252 * 16 14 13 38 38 H 1.08998 * 113.61574 * 254.53607 * 16 14 13 39 39 H 0.96998 * 119.99994 * 287.50414 * 19 17 16 40 40 H 1.08992 * 109.47399 * 299.99938 * 24 22 20 41 41 H 1.09004 * 109.46724 * 60.00424 * 24 22 20 42 42 H 1.08993 * 109.47662 * 180.02562 * 25 24 22 43 43 H 1.09002 * 109.47075 * 300.00932 * 25 24 22 44 44 H 1.09002 * 109.47153 * 60.00231 * 26 25 24 45 45 H 1.09001 * 109.47289 * 180.02562 * 26 25 24 46 46 H 1.08996 * 109.47853 * 300.00179 * 30 22 20 47 47 H 1.09002 * 109.47153 * 60.00207 * 30 22 20 48 48 H 1.09001 * 113.61639 * 105.46911 * 31 14 13 49 49 H 1.09003 * 113.69463 * 334.57947 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3706 0.0000 11 8 3.4471 -3.4210 0.0009 12 6 5.5607 -2.3706 0.0000 13 7 6.0502 -3.7556 0.0006 14 6 7.5188 -3.7949 0.0013 15 1 7.9665 -2.8876 -0.4042 16 6 8.1227 -4.2345 1.3455 17 6 9.1482 -5.0410 0.5313 18 1 9.3750 -6.0181 0.9578 19 7 10.3502 -4.2795 0.1825 20 6 11.5186 -4.5448 0.7996 21 8 11.5751 -5.4141 1.6434 22 6 12.7549 -3.7611 0.4412 23 1 12.9785 -3.8991 -0.6167 24 6 13.9340 -4.2563 1.2811 25 6 15.1893 -3.4611 0.9168 26 6 14.9515 -1.9760 1.1974 27 6 13.7723 -1.4807 0.3575 28 1 13.6032 -0.4225 0.5571 29 9 14.0595 -1.6586 -1.0001 30 6 12.5169 -2.2762 0.7227 31 6 8.1007 -5.0880 -0.5936 32 1 -0.4850 0.8401 0.0004 33 1 3.8647 -0.3634 -0.0011 34 1 5.9240 -1.8567 0.8899 35 1 5.9239 -1.8568 -0.8900 36 1 5.6748 -4.2723 -0.7805 37 1 7.4541 -4.8547 1.9425 38 1 8.5634 -3.4161 1.9147 39 1 10.3050 -3.5845 -0.4926 40 1 13.7101 -4.1180 2.3388 41 1 14.1037 -5.3143 1.0809 42 1 16.0294 -3.8142 1.5148 43 1 15.4130 -3.5997 -0.1410 44 1 14.7278 -1.8373 2.2551 45 1 15.8456 -1.4094 0.9374 46 1 11.6768 -1.9230 0.1248 47 1 12.2932 -2.1382 1.7806 48 1 8.5237 -4.9587 -1.5898 49 1 7.4270 -5.9424 -0.5275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731444585.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:20 Heat of formation + Delta-G solvation = -141.218645 kcal Electronic energy + Delta-G solvation = -29395.307316 eV Core-core repulsion = 25077.335141 eV Total energy + Delta-G solvation = -4317.972175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -48.57534 -41.49008 -40.37701 -39.66591 -37.91613 -36.16789 -35.45287 -33.83945 -33.61845 -31.86388 -31.29689 -28.63648 -26.68893 -26.13662 -25.05858 -23.81058 -23.46027 -21.77912 -21.29914 -20.55865 -20.47954 -20.08886 -18.47258 -17.87216 -17.29350 -17.00275 -16.84850 -16.62743 -16.39983 -16.32333 -15.96124 -15.88918 -15.72165 -15.24609 -15.05814 -14.91447 -14.68531 -14.39762 -14.33224 -14.04584 -13.59306 -13.39782 -13.29367 -13.27303 -13.13205 -12.90533 -12.81902 -12.56965 -12.48889 -12.41325 -12.12207 -11.98320 -11.71526 -11.55106 -11.51124 -11.48100 -11.43222 -11.02658 -10.69194 -10.41890 -10.24979 -10.06183 -9.30146 -8.41145 -6.02271 1.30483 1.35984 1.45270 1.57428 1.96143 2.10868 2.23477 2.75480 3.15391 3.41642 3.42492 3.53029 3.56435 3.60526 3.68293 3.88304 3.96760 4.05223 4.08748 4.13677 4.16204 4.16919 4.36447 4.38208 4.44076 4.52435 4.56051 4.58138 4.62746 4.84902 4.87810 4.90691 5.00476 5.03335 5.06327 5.08788 5.14646 5.16109 5.22827 5.28509 5.45629 5.52022 5.59265 5.92672 6.13861 6.41872 6.52811 6.60063 6.88294 7.23397 7.39978 7.96906 8.76525 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.001949 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.019419 B =14361.784531 C =15743.088124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.967 3.033 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.230 1.230 7 C -0.330 4.330 8 H 0.054 0.946 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.616 6.616 12 C 0.063 3.937 13 N -0.677 5.677 14 C 0.063 3.937 15 H 0.096 0.904 16 C -0.136 4.136 17 C 0.123 3.877 18 H 0.086 0.914 19 N -0.699 5.699 20 C 0.519 3.481 21 O -0.581 6.581 22 C -0.100 4.100 23 H 0.110 0.890 24 C -0.099 4.099 25 C -0.118 4.118 26 C -0.148 4.148 27 C 0.091 3.909 28 H 0.107 0.893 29 F -0.225 7.225 30 C -0.135 4.135 31 C -0.136 4.136 32 H 0.279 0.721 33 H 0.390 0.610 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.347 0.653 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.414 0.586 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.308 0.861 -1.167 36.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.459 4.459 8 H 0.072 0.928 9 N -0.233 5.233 10 C 0.235 3.765 11 O -0.500 6.500 12 C -0.070 4.070 13 N -0.310 5.310 14 C -0.047 4.047 15 H 0.114 0.886 16 C -0.176 4.176 17 C 0.017 3.983 18 H 0.104 0.896 19 N -0.350 5.350 20 C 0.307 3.693 21 O -0.460 6.460 22 C -0.121 4.121 23 H 0.128 0.872 24 C -0.137 4.137 25 C -0.155 4.155 26 C -0.185 4.185 27 C 0.055 3.945 28 H 0.125 0.875 29 F -0.206 7.206 30 C -0.173 4.173 31 C -0.175 4.175 32 H 0.088 0.912 33 H 0.226 0.774 34 H 0.127 0.873 35 H 0.100 0.900 36 H 0.167 0.833 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.252 0.748 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.111 0.889 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 35.690 -0.434 0.064 35.692 hybrid contribution -0.525 1.078 -1.084 1.617 sum 35.165 0.645 -1.020 35.186 Atomic orbital electron populations 1.69810 1.08198 1.29260 1.50267 1.26161 0.96512 1.02852 0.96066 0.85339 0.79481 0.76533 0.79987 1.17975 1.20147 1.15356 1.19006 0.81600 0.94882 1.50406 0.92821 1.42034 1.05762 1.07655 1.67800 1.21074 0.91165 0.83259 0.81041 1.90546 1.71470 1.32860 1.55127 1.21693 0.89246 0.92178 1.03850 1.60171 1.07606 1.11880 1.51303 1.23223 0.85951 0.98289 0.97190 0.88598 1.23499 0.96911 1.00167 0.97047 1.21579 0.83888 0.95691 0.97147 0.89554 1.45638 1.07703 1.39309 1.42355 1.21078 0.85191 0.82880 0.80162 1.90701 1.86147 1.34780 1.34363 1.21298 0.92148 0.95494 1.03159 0.87200 1.21341 0.93319 0.99603 0.99482 1.21501 0.97247 0.94569 1.02197 1.22190 0.98381 0.96669 1.01306 1.21714 0.95217 1.01577 0.76006 0.87537 1.92786 1.94899 1.97092 1.35870 1.22170 0.98657 0.92130 1.04375 1.23516 0.96929 0.98363 0.98671 0.91157 0.77432 0.87293 0.90027 0.83274 0.90087 0.91288 0.74839 0.91864 0.92354 0.90375 0.91696 0.88977 0.89901 0.88924 0.89054 0.88912 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.96 21.66 0.30 -55.97 16 2 C -0.02 -0.96 5.50 84.93 0.47 -0.50 16 3 Si 0.97 38.14 27.74 68.60 1.90 40.04 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 5 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 7 C -0.33 -19.26 10.16 84.04 0.85 -18.41 16 8 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 9 N -0.59 -27.44 5.09 -306.97 -1.56 -29.00 16 10 C 0.45 19.79 7.82 87.66 0.69 20.48 16 11 O -0.62 -33.95 15.78 -3.05 -0.05 -34.00 16 12 C 0.06 1.80 6.01 85.56 0.51 2.31 16 13 N -0.68 -18.48 6.18 -492.84 -3.05 -21.52 16 14 C 0.06 1.14 4.02 45.44 0.18 1.32 16 15 H 0.10 1.27 7.87 -2.39 -0.02 1.26 16 16 C -0.14 -2.68 7.68 31.12 0.24 -2.45 16 17 C 0.12 2.13 4.32 45.52 0.20 2.32 16 18 H 0.09 1.87 7.46 -2.39 -0.02 1.85 16 19 N -0.70 -9.36 5.15 -440.03 -2.27 -11.62 16 20 C 0.52 9.00 7.15 87.66 0.63 9.63 16 21 O -0.58 -15.42 15.58 -3.05 -0.05 -15.46 16 22 C -0.10 -1.15 2.40 -11.54 -0.03 -1.17 16 23 H 0.11 1.13 7.80 -2.39 -0.02 1.11 16 24 C -0.10 -1.26 4.49 30.60 0.14 -1.13 16 25 C -0.12 -1.05 5.80 30.59 0.18 -0.87 16 26 C -0.15 -0.94 5.72 30.60 0.17 -0.77 16 27 C 0.09 0.64 4.13 30.61 0.13 0.77 16 28 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 29 F -0.23 -2.75 16.04 44.97 0.72 -2.03 16 30 C -0.14 -1.00 4.90 30.61 0.15 -0.85 16 31 C -0.14 -2.10 7.40 31.12 0.23 -1.87 16 32 H 0.28 15.32 8.31 -92.70 -0.77 14.55 16 33 H 0.39 14.80 5.76 -92.71 -0.53 14.26 16 34 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 36 H 0.35 10.11 8.25 -89.70 -0.74 9.37 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.41 3.19 8.12 -92.71 -0.75 2.44 16 40 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 41 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.06 0.65 7.80 -2.39 -0.02 0.63 16 44 H 0.09 0.43 8.14 -2.39 -0.02 0.42 16 45 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.09 0.46 7.56 -2.39 -0.02 0.44 16 47 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -81.91 395.84 -0.41 -82.33 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: -1.10 Total: 38.43 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 4.73 Total: 8.82 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -6.58 Total: -118.12 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -0.10 Total: -49.46 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.72 Total: -2.03 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.04 kcal Total: -81.91 -0.41 -82.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731444585.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.892 kcal (2) G-P(sol) polarization free energy of solvation -81.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds