Wall clock time and date at job start Wed Apr 1 2020 00:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48497 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47378 * 300.00696 * 3 2 1 6 6 H 1.48504 * 109.47041 * 60.00682 * 3 2 1 7 7 C 1.38957 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00193 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00005 * 0.26326 * 7 2 1 10 10 C 1.34777 * 119.99843 * 179.72989 * 9 7 2 11 11 O 1.21286 * 119.99909 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99663 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47210 * 179.97438 * 12 10 9 14 14 C 1.47443 * 110.99778 * 75.63296 * 13 12 10 15 15 C 1.54317 * 107.23075 * 123.25820 * 14 13 12 16 16 C 1.55138 * 103.02170 * 22.28678 * 15 14 13 17 17 C 1.47838 * 111.00291 * 196.47854 * 13 12 10 18 18 H 1.09000 * 110.37857 * 332.46879 * 17 13 12 19 19 C 1.53001 * 110.37255 * 94.80910 * 17 13 12 20 20 N 1.46498 * 109.47231 * 297.98469 * 19 17 13 21 21 C 1.34774 * 120.00131 * 173.28726 * 20 19 17 22 22 O 1.21277 * 120.00005 * 0.02562 * 21 20 19 23 23 C 1.50702 * 120.00235 * 180.02562 * 21 20 19 24 24 F 1.39900 * 110.01215 * 54.29977 * 23 21 20 25 25 C 1.54268 * 110.03327 * 292.91243 * 23 21 20 26 26 C 1.54959 * 104.16121 * 217.13341 * 25 23 21 27 27 C 1.54893 * 102.77625 * 37.88560 * 26 25 23 28 28 C 1.53873 * 110.03309 * 175.69057 * 23 21 20 29 29 H 0.96999 * 119.99960 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99916 * 359.73004 * 9 7 2 31 31 H 1.08995 * 109.47333 * 300.00275 * 12 10 9 32 32 H 1.09005 * 109.47302 * 59.99774 * 12 10 9 33 33 H 1.08999 * 109.89208 * 242.66716 * 14 13 12 34 34 H 1.09000 * 109.89094 * 3.69579 * 14 13 12 35 35 H 1.09002 * 110.70749 * 140.67093 * 15 14 13 36 36 H 1.08997 * 110.70659 * 263.72649 * 15 14 13 37 37 H 1.09000 * 110.99118 * 82.43131 * 16 15 14 38 38 H 1.09002 * 110.99296 * 206.21666 * 16 15 14 39 39 H 1.08996 * 109.47285 * 57.98877 * 19 17 13 40 40 H 1.09009 * 109.47025 * 177.98744 * 19 17 13 41 41 H 0.96997 * 119.99906 * 353.29877 * 20 19 17 42 42 H 1.09003 * 110.48670 * 335.78426 * 25 23 21 43 43 H 1.09000 * 110.48619 * 98.42321 * 25 23 21 44 44 H 1.08998 * 110.72236 * 279.57979 * 26 25 23 45 45 H 1.09000 * 110.92488 * 156.29441 * 26 25 23 46 46 H 1.09004 * 110.48713 * 203.40417 * 27 26 25 47 47 H 1.09001 * 110.48582 * 80.76133 * 27 26 25 48 48 H 1.09002 * 110.03188 * 238.56839 * 28 23 21 49 49 H 1.08992 * 110.03158 * 0.02562 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8896 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0065 10 6 1.9971 -3.5579 -0.0125 11 8 3.2100 -3.5579 -0.0122 12 6 1.2436 -4.8629 -0.0197 13 7 2.1981 -5.9796 -0.0260 14 6 2.8011 -6.1666 1.3064 15 6 2.5162 -7.6208 1.7370 16 6 2.2625 -8.3418 0.3870 17 6 1.5363 -7.2401 -0.4244 18 1 0.4783 -7.2121 -0.1639 19 6 1.7103 -7.4817 -1.9252 20 7 1.0699 -6.3963 -2.6721 21 6 1.2111 -6.3244 -4.0105 22 8 1.8679 -7.1586 -4.5966 23 6 0.5528 -5.2075 -4.7788 24 9 0.9311 -3.9711 -4.2446 25 6 -0.9813 -5.3601 -4.7228 26 6 -1.4582 -4.9142 -6.1282 27 6 -0.3575 -5.4809 -7.0591 28 6 0.9494 -5.2838 -6.2635 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3907 -0.0064 31 1 0.6166 -4.9254 0.8697 32 1 0.6171 -4.9159 -0.9102 33 1 3.8769 -5.9996 1.2533 34 1 2.3528 -5.4724 2.0171 35 1 3.3802 -8.0484 2.2459 36 1 1.6331 -7.6681 2.3742 37 1 3.2024 -8.6217 -0.0889 38 1 1.6220 -9.2131 0.5239 39 1 2.7725 -7.5122 -2.1676 40 1 1.2483 -8.4312 -2.1963 41 1 0.5444 -5.7292 -2.2033 42 1 -1.2549 -6.3992 -4.5392 43 1 -1.4013 -4.7124 -3.9533 44 1 -1.4982 -3.8270 -6.1949 45 1 -2.4282 -5.3504 -6.3667 46 1 -0.3232 -4.9213 -7.9939 47 1 -0.5300 -6.5395 -7.2533 48 1 1.4358 -4.3571 -6.5682 49 1 1.6176 -6.1289 -6.4285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731826745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:51 Heat of formation + Delta-G solvation = -142.580070 kcal Electronic energy + Delta-G solvation = -31573.841326 eV Core-core repulsion = 27255.810115 eV Total energy + Delta-G solvation = -4318.031210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.99178 -41.28770 -40.52282 -39.30078 -37.87446 -35.99811 -35.79553 -33.46557 -32.96053 -31.50389 -29.86756 -29.57300 -28.34633 -26.46432 -25.71529 -23.25883 -22.24711 -21.84803 -21.56669 -20.97495 -20.59990 -19.87738 -19.09320 -17.76654 -17.68152 -17.33477 -16.93552 -16.68136 -16.49969 -16.31201 -15.87622 -15.66416 -15.59190 -15.52562 -15.15318 -14.86875 -14.60444 -14.43289 -14.16991 -13.87431 -13.59767 -13.56756 -13.17990 -13.09305 -12.94870 -12.79349 -12.57794 -12.40678 -12.37901 -12.25961 -12.19299 -12.13343 -12.10318 -12.01307 -11.86245 -11.55673 -11.51568 -11.49251 -10.84438 -10.35181 -10.20350 -9.99030 -9.23745 -8.46153 -5.93746 1.25670 1.34923 1.40077 1.53806 1.90731 2.06993 2.27675 2.70364 3.07829 3.19447 3.24923 3.31108 3.41928 3.58491 3.68144 3.73678 3.96053 4.09628 4.19560 4.20041 4.25372 4.25967 4.34410 4.34650 4.40589 4.46046 4.57125 4.62922 4.64167 4.74484 4.78138 4.89368 4.94681 4.99260 5.06190 5.08834 5.11899 5.15554 5.17558 5.31384 5.36198 5.37596 5.41545 5.87888 6.03067 6.12289 6.23603 6.61930 6.90707 7.14687 7.57346 8.14366 8.71493 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.007391 B = 0.004652 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3787.385037 B = 6017.866492 C = 9098.365855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.330 4.330 8 H 0.073 0.927 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.615 6.615 12 C 0.057 3.943 13 N -0.526 5.526 14 C 0.052 3.948 15 C -0.129 4.129 16 C -0.108 4.108 17 C 0.057 3.943 18 H 0.086 0.914 19 C 0.135 3.865 20 N -0.707 5.707 21 C 0.500 3.500 22 O -0.556 6.556 23 C 0.086 3.914 24 F -0.208 7.208 25 C -0.138 4.138 26 C -0.120 4.120 27 C -0.114 4.114 28 C -0.146 4.146 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.403 0.597 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 -17.256 -5.702 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.202 1.202 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.459 4.459 8 H 0.091 0.909 9 N -0.211 5.211 10 C 0.227 3.773 11 O -0.501 6.501 12 C -0.074 4.074 13 N -0.252 5.252 14 C -0.075 4.075 15 C -0.168 4.168 16 C -0.147 4.147 17 C -0.051 4.051 18 H 0.104 0.896 19 C 0.011 3.989 20 N -0.360 5.360 21 C 0.285 3.715 22 O -0.435 6.435 23 C 0.064 3.936 24 F -0.189 7.189 25 C -0.176 4.176 26 C -0.157 4.157 27 C -0.151 4.151 28 C -0.184 4.184 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.242 0.758 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.120 0.880 46 H 0.107 0.893 47 H 0.100 0.900 48 H 0.095 0.905 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.789 -17.539 -6.426 19.874 hybrid contribution -0.330 1.713 0.944 1.984 sum -7.119 -15.825 -5.481 18.198 Atomic orbital electron populations 1.69660 1.06617 1.29107 1.50497 1.25942 0.96534 1.02084 0.96398 0.84951 0.77957 0.77503 0.78412 1.20199 1.19652 1.19307 1.19615 0.92460 0.84107 1.49746 0.90855 1.41887 1.09167 1.04607 1.65407 1.20783 0.88339 0.85919 0.82270 1.90497 1.15877 1.87831 1.55882 1.21991 0.93495 0.89466 1.02497 1.62968 1.30956 1.03057 1.28169 1.22681 0.99553 0.97394 0.87900 1.22774 1.03261 0.92956 0.97785 1.22653 1.01267 0.96817 0.93919 1.22987 0.98802 0.89593 0.93711 0.89637 1.21554 0.97915 0.89588 0.89828 1.46200 1.52600 1.30626 1.06531 1.20979 0.80479 0.86800 0.83273 1.90642 1.40929 1.42698 1.69266 1.22192 0.98495 0.77775 0.95104 1.92965 1.93026 1.44769 1.88098 1.23045 0.88755 1.04470 1.01297 1.22559 0.99696 1.01433 0.92003 1.22355 0.91761 1.02480 0.98513 1.22782 1.01223 1.04291 0.90141 0.91333 0.77088 0.90429 0.88821 0.93036 0.94238 0.89402 0.89726 0.90657 0.87094 0.92797 0.88655 0.75841 0.88061 0.89049 0.91145 0.87980 0.89321 0.89979 0.90474 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.66 13.05 21.67 0.28 -49.38 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 0.99 43.95 29.55 68.60 2.03 45.98 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 8 H 0.07 4.61 7.16 -2.91 -0.02 4.59 16 9 N -0.57 -29.83 5.29 -306.98 -1.62 -31.45 16 10 C 0.44 21.42 7.60 87.66 0.67 22.08 16 11 O -0.62 -35.43 15.42 -3.05 -0.05 -35.48 16 12 C 0.06 1.96 4.92 85.56 0.42 2.38 16 13 N -0.53 -16.59 4.34 -865.20 -3.76 -20.35 16 14 C 0.05 1.57 5.99 86.65 0.52 2.09 16 15 C -0.13 -2.42 6.94 31.77 0.22 -2.20 16 16 C -0.11 -1.79 6.50 31.98 0.21 -1.58 16 17 C 0.06 1.23 2.66 45.39 0.12 1.35 16 18 H 0.09 1.47 7.81 -2.39 -0.02 1.45 16 19 C 0.13 3.25 5.39 86.38 0.47 3.71 16 20 N -0.71 -19.34 5.37 -463.06 -2.49 -21.83 16 21 C 0.50 15.32 6.70 87.66 0.59 15.91 16 22 O -0.56 -19.53 15.20 -3.02 -0.05 -19.58 16 23 C 0.09 2.38 1.48 -10.82 -0.02 2.37 16 24 F -0.21 -7.51 16.78 44.97 0.75 -6.75 16 25 C -0.14 -2.73 6.14 31.69 0.19 -2.53 16 26 C -0.12 -1.93 6.91 31.91 0.22 -1.71 16 27 C -0.11 -1.94 6.83 31.67 0.22 -1.72 16 28 C -0.15 -3.64 6.25 31.32 0.20 -3.44 16 29 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 30 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 31 H 0.08 2.28 7.78 -2.39 -0.02 2.26 16 32 H 0.09 2.83 4.97 -2.38 -0.01 2.82 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.04 1.28 7.36 -2.39 -0.02 1.26 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.35 8.06 -2.39 -0.02 1.33 16 38 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.05 1.61 8.11 -2.39 -0.02 1.59 16 40 H 0.10 1.82 8.14 -2.38 -0.02 1.81 16 41 H 0.40 10.65 5.39 -92.71 -0.50 10.15 16 42 H 0.10 1.66 7.85 -2.39 -0.02 1.64 16 43 H 0.09 1.80 8.11 -2.39 -0.02 1.78 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.08 1.98 8.02 -2.39 -0.02 1.97 16 49 H 0.09 2.42 6.40 -2.39 -0.02 2.40 16 Total: -1.00 -76.74 392.33 0.15 -76.59 By element: Atomic # 1 Polarization: 44.21 SS G_CDS: -0.26 Total: 43.96 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 5.30 Total: 18.30 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -7.59 Total: -123.01 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -0.09 Total: -55.05 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.75 Total: -6.75 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -76.74 0.15 -76.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731826745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.993 kcal (2) G-P(sol) polarization free energy of solvation -76.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds