Wall clock time and date at job start Wed Apr 1 2020 00:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99856 * 2 1 4 4 H 1.48508 * 109.47422 * 269.99975 * 3 2 1 5 5 H 1.48497 * 109.47633 * 29.99978 * 3 2 1 6 6 H 1.48501 * 109.47392 * 150.00064 * 3 2 1 7 7 C 1.38809 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99790 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99841 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47237 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.05412 * 53.58325 * 11 10 9 13 13 C 1.54272 * 110.03290 * 292.16907 * 11 10 9 14 14 C 1.54885 * 104.19408 * 217.10259 * 13 11 10 15 15 C 1.54893 * 102.75072 * 37.94311 * 14 13 11 16 16 C 1.53877 * 110.03355 * 174.99896 * 11 10 9 17 17 H 1.08999 * 110.07468 * 238.58557 * 16 11 10 18 18 N 1.46497 * 110.03057 * 0.02562 * 16 11 10 19 19 C 1.34777 * 119.99525 * 203.61529 * 18 16 11 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 16 22 22 N 1.46499 * 109.47257 * 180.27849 * 21 19 18 23 23 C 1.36826 * 125.06447 * 264.70177 * 22 21 19 24 24 C 1.34238 * 109.93332 * 179.81240 * 23 22 21 25 25 C 1.46487 * 106.99584 * 0.43204 * 24 23 22 26 26 C 1.39629 * 134.03086 * 179.71236 * 25 24 23 27 27 C 1.36632 * 119.76381 * 180.02562 * 26 25 24 28 28 C 1.38833 * 120.52705 * 359.97438 * 27 26 25 29 29 C 1.37750 * 120.66601 * 0.03148 * 28 27 26 30 30 C 1.37693 * 125.06454 * 84.99695 * 22 21 19 31 31 H 0.97005 * 119.99764 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99963 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47450 * 60.00470 * 10 9 7 34 34 H 1.09005 * 109.47421 * 300.00255 * 10 9 7 35 35 H 1.09004 * 110.48309 * 98.42436 * 13 11 10 36 36 H 1.08998 * 110.59613 * 335.83919 * 13 11 10 37 37 H 1.08999 * 110.76016 * 279.62427 * 14 13 11 38 38 H 1.09004 * 110.91559 * 156.32781 * 14 13 11 39 39 H 1.09001 * 110.48306 * 203.38009 * 15 14 13 40 40 H 1.08996 * 110.48542 * 80.73541 * 15 14 13 41 41 H 0.97000 * 120.00580 * 23.62275 * 18 16 11 42 42 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 43 43 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 44 44 H 1.08006 * 125.03550 * 359.96696 * 23 22 21 45 45 H 1.08007 * 126.50435 * 180.14271 * 24 23 22 46 46 H 1.07999 * 120.12003 * 0.02562 * 26 25 24 47 47 H 1.07997 * 119.73343 * 179.97438 * 27 26 25 48 48 H 1.07993 * 119.66478 * 180.02562 * 28 27 26 49 49 H 1.08000 * 120.10857 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3592 -4.7086 -0.8254 13 6 0.3042 -4.8663 1.3407 14 6 0.1413 -6.3786 1.6327 15 6 1.4872 -6.9682 1.1426 16 6 1.8160 -6.1561 -0.1272 17 1 1.4771 -6.6941 -1.0126 18 7 3.2586 -5.9143 -0.2082 19 6 4.0639 -6.8295 -0.7829 20 8 3.5944 -7.8529 -1.2335 21 6 5.5472 -6.5780 -0.8718 22 7 6.1952 -7.7095 -1.5396 23 6 6.7785 -8.7699 -0.9013 24 6 7.2744 -9.6309 -1.8040 25 6 6.9942 -9.0714 -3.1284 26 6 7.2594 -9.4888 -4.4342 27 6 6.8553 -8.7185 -5.4878 28 6 6.1824 -7.5237 -5.2707 29 6 5.9105 -7.0931 -3.9908 30 6 6.3131 -7.8614 -2.9031 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6846 -3.7146 0.8895 34 1 2.6847 -3.7145 -0.8905 35 1 -0.6711 -4.3892 1.2437 36 1 0.8860 -4.3863 2.1276 37 1 -0.6917 -6.7940 1.0656 38 1 0.0073 -6.5568 2.6997 39 1 1.3751 -8.0252 0.9010 40 1 2.2620 -6.8282 1.8963 41 1 3.6342 -5.0957 0.1519 42 1 5.7278 -5.6672 -1.4428 43 1 5.9574 -6.4650 0.1317 44 1 6.8300 -8.8968 0.1700 45 1 7.7873 -10.5579 -1.5935 46 1 7.7821 -10.4173 -4.6108 47 1 7.0611 -9.0416 -6.4976 48 1 5.8690 -6.9259 -6.1137 49 1 5.3860 -6.1624 -3.8323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732630357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:01 Heat of formation + Delta-G solvation = 40.067022 kcal Electronic energy + Delta-G solvation = -29237.445975 eV Core-core repulsion = 25358.104161 eV Total energy + Delta-G solvation = -3879.341813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.51811 -40.05159 -38.13240 -36.96959 -34.45078 -33.75683 -32.99748 -31.49175 -30.61418 -28.99668 -28.67166 -28.13798 -26.35389 -24.62683 -22.81985 -22.57718 -21.77738 -21.25676 -20.53955 -20.12982 -19.12629 -17.81357 -17.36420 -17.03400 -16.58870 -15.86152 -15.50613 -15.38114 -15.21861 -14.71149 -14.64382 -14.19610 -13.94025 -13.85327 -13.68847 -13.51378 -13.17359 -13.06706 -12.99095 -12.75063 -12.44474 -12.20258 -11.72230 -11.70047 -11.62860 -11.39098 -10.93361 -10.92795 -10.90801 -10.87472 -10.56841 -10.47299 -10.36696 -10.11334 -10.03108 -9.77323 -9.65302 -9.08419 -8.93070 -8.23312 -7.74463 -7.02295 -5.85015 -3.14523 1.07615 1.57036 2.39957 2.45565 2.67925 3.22941 3.37313 3.42262 3.44299 3.88994 4.42853 4.44786 4.52598 4.59534 4.67716 4.73135 4.75917 4.79573 4.95596 5.03310 5.06992 5.35591 5.38419 5.40428 5.46142 5.54842 5.56497 5.58736 5.68397 5.72180 5.78633 5.84768 5.85095 5.98502 5.99803 6.08395 6.14027 6.21678 6.36005 6.40861 6.49896 6.50849 6.55021 6.61988 6.68741 6.70511 6.72750 7.10134 7.15267 7.43736 7.59508 8.10221 8.33301 9.44896 10.01658 10.36095 11.37586 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.002669 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.096135 B =10487.302608 C =12092.153797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.158 3.842 11 C -0.108 4.108 12 H 0.082 0.918 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.150 3.850 17 H 0.088 0.912 18 N -0.717 5.717 19 C 0.490 3.510 20 O -0.525 6.525 21 C 0.088 3.912 22 N -0.467 5.467 23 C 0.060 3.940 24 C -0.206 4.206 25 C -0.108 4.108 26 C -0.074 4.074 27 C -0.149 4.149 28 C -0.102 4.102 29 C -0.124 4.124 30 C 0.110 3.890 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.017 0.983 34 H 0.020 0.980 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.408 0.592 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.166 0.834 45 H 0.146 0.854 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.104 -18.655 -1.598 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.030 3.970 11 C -0.127 4.127 12 H 0.101 0.899 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.045 3.955 17 H 0.106 0.894 18 N -0.372 5.372 19 C 0.274 3.726 20 O -0.401 6.401 21 C -0.038 4.038 22 N -0.150 5.150 23 C -0.064 4.064 24 C -0.230 4.230 25 C -0.113 4.113 26 C -0.093 4.093 27 C -0.168 4.168 28 C -0.121 4.121 29 C -0.144 4.144 30 C 0.004 3.996 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.035 0.965 34 H 0.037 0.963 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.246 0.754 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.183 0.817 45 H 0.163 0.837 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.141 0.859 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.755 -19.005 -1.732 22.414 hybrid contribution 0.171 1.480 0.270 1.514 sum 11.926 -17.525 -1.462 21.248 Atomic orbital electron populations 1.69658 1.05136 1.25776 1.57339 1.24747 0.95520 0.97742 1.02767 0.86200 0.78633 0.83814 0.77566 1.21664 1.21720 1.20758 1.19186 0.90946 0.84144 1.43235 0.91254 1.42314 1.05908 0.99671 1.89337 1.20670 0.93396 0.85753 0.97181 1.22220 0.97994 0.93362 0.99114 0.89921 1.22352 1.00846 0.95069 0.96613 1.22490 0.96758 0.96305 1.00713 1.22751 0.97867 0.99346 0.96960 1.21665 0.78839 0.96151 0.98810 0.89413 1.46384 1.08088 1.22529 1.60184 1.20896 0.88909 0.84255 0.78523 1.90758 1.76212 1.26560 1.46548 1.21625 0.91129 0.90030 1.01004 1.43356 1.48236 1.19371 1.04015 1.21751 0.98532 0.87933 0.98215 1.21615 1.09640 1.01505 0.90282 1.19186 1.03136 0.95288 0.93689 1.20229 0.99357 0.99257 0.90448 1.20603 1.01771 0.95849 0.98604 1.20791 0.98942 0.96690 0.95661 1.20060 1.03481 1.00174 0.90690 1.18188 1.01078 0.97027 0.83260 0.93416 0.78109 0.96537 0.96268 0.91141 0.90973 0.91558 0.91590 0.91568 0.91391 0.75353 0.86523 0.86173 0.81677 0.83666 0.86280 0.86241 0.85865 0.86529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 8 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 9 N -0.73 -17.29 5.45 -59.91 -0.33 -17.62 16 10 C 0.16 2.83 4.18 -4.04 -0.02 2.82 16 11 C -0.11 -1.62 2.96 -89.50 -0.26 -1.88 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.11 -1.58 6.08 -25.07 -0.15 -1.74 16 14 C -0.12 -1.46 6.91 -24.74 -0.17 -1.63 16 15 C -0.13 -1.57 6.52 -25.07 -0.16 -1.73 16 16 C 0.15 2.00 3.21 -66.81 -0.21 1.79 16 17 H 0.09 1.30 7.61 -51.93 -0.40 0.90 16 18 N -0.72 -8.67 4.42 -52.72 -0.23 -8.90 16 19 C 0.49 6.23 7.89 -10.98 -0.09 6.15 16 20 O -0.53 -8.83 16.10 5.55 0.09 -8.74 16 21 C 0.09 0.85 6.48 -5.19 -0.03 0.81 16 22 N -0.47 -5.49 2.27 -115.71 -0.26 -5.75 16 23 C 0.06 0.63 11.27 -16.73 -0.19 0.44 16 24 C -0.21 -2.26 11.08 -37.67 -0.42 -2.68 16 25 C -0.11 -1.39 6.37 -105.14 -0.67 -2.06 16 26 C -0.07 -0.84 10.05 -39.64 -0.40 -1.23 16 27 C -0.15 -1.59 9.97 -39.94 -0.40 -1.98 16 28 C -0.10 -1.15 10.01 -39.54 -0.40 -1.54 16 29 C -0.12 -1.57 10.00 -39.43 -0.39 -1.96 16 30 C 0.11 1.47 6.80 -83.99 -0.57 0.90 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.39 9.76 7.55 -40.82 -0.31 9.45 16 33 H 0.02 0.29 7.12 -51.93 -0.37 -0.08 16 34 H 0.02 0.35 7.40 -51.93 -0.38 -0.03 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.10 7.77 -51.93 -0.40 0.70 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 41 H 0.41 4.52 5.84 -40.82 -0.24 4.28 16 42 H 0.12 0.96 8.14 -51.92 -0.42 0.54 16 43 H 0.12 0.76 8.12 -51.93 -0.42 0.33 16 44 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 46 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 48 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 49 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 400.25 15.07 6.03 6.03 Total: -1.00 -33.82 400.25 -11.34 -45.16 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -7.56 Total: 12.42 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -4.78 Total: -12.62 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.10 Total: -58.93 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.82 -11.34 -45.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732630357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.226 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds