Wall clock time and date at job start Wed Apr 1 2020 00:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99856 * 2 1 4 4 H 1.48508 * 109.47422 * 269.99975 * 3 2 1 5 5 H 1.48497 * 109.47633 * 29.99978 * 3 2 1 6 6 H 1.48501 * 109.47392 * 150.00064 * 3 2 1 7 7 C 1.38809 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99790 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99841 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47237 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.05412 * 53.58325 * 11 10 9 13 13 C 1.54272 * 110.03290 * 292.16907 * 11 10 9 14 14 C 1.54885 * 104.19408 * 217.10259 * 13 11 10 15 15 C 1.54893 * 102.75072 * 37.94311 * 14 13 11 16 16 C 1.53877 * 110.03355 * 174.99896 * 11 10 9 17 17 H 1.08999 * 110.07468 * 238.58557 * 16 11 10 18 18 N 1.46497 * 110.03057 * 0.02562 * 16 11 10 19 19 C 1.34777 * 119.99525 * 203.61529 * 18 16 11 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 16 22 22 N 1.46499 * 109.47257 * 180.27849 * 21 19 18 23 23 C 1.36826 * 125.06447 * 264.70177 * 22 21 19 24 24 C 1.34238 * 109.93332 * 179.81240 * 23 22 21 25 25 C 1.46487 * 106.99584 * 0.43204 * 24 23 22 26 26 C 1.39629 * 134.03086 * 179.71236 * 25 24 23 27 27 C 1.36632 * 119.76381 * 180.02562 * 26 25 24 28 28 C 1.38833 * 120.52705 * 359.97438 * 27 26 25 29 29 C 1.37750 * 120.66601 * 0.03148 * 28 27 26 30 30 C 1.37693 * 125.06454 * 84.99695 * 22 21 19 31 31 H 0.97005 * 119.99764 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99963 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47450 * 60.00470 * 10 9 7 34 34 H 1.09005 * 109.47421 * 300.00255 * 10 9 7 35 35 H 1.09004 * 110.48309 * 98.42436 * 13 11 10 36 36 H 1.08998 * 110.59613 * 335.83919 * 13 11 10 37 37 H 1.08999 * 110.76016 * 279.62427 * 14 13 11 38 38 H 1.09004 * 110.91559 * 156.32781 * 14 13 11 39 39 H 1.09001 * 110.48306 * 203.38009 * 15 14 13 40 40 H 1.08996 * 110.48542 * 80.73541 * 15 14 13 41 41 H 0.97000 * 120.00580 * 23.62275 * 18 16 11 42 42 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 43 43 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 44 44 H 1.08006 * 125.03550 * 359.96696 * 23 22 21 45 45 H 1.08007 * 126.50435 * 180.14271 * 24 23 22 46 46 H 1.07999 * 120.12003 * 0.02562 * 26 25 24 47 47 H 1.07997 * 119.73343 * 179.97438 * 27 26 25 48 48 H 1.07993 * 119.66478 * 180.02562 * 28 27 26 49 49 H 1.08000 * 120.10857 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3592 -4.7086 -0.8254 13 6 0.3042 -4.8663 1.3407 14 6 0.1413 -6.3786 1.6327 15 6 1.4872 -6.9682 1.1426 16 6 1.8160 -6.1561 -0.1272 17 1 1.4771 -6.6941 -1.0126 18 7 3.2586 -5.9143 -0.2082 19 6 4.0639 -6.8295 -0.7829 20 8 3.5944 -7.8529 -1.2335 21 6 5.5472 -6.5780 -0.8718 22 7 6.1952 -7.7095 -1.5396 23 6 6.7785 -8.7699 -0.9013 24 6 7.2744 -9.6309 -1.8040 25 6 6.9942 -9.0714 -3.1284 26 6 7.2594 -9.4888 -4.4342 27 6 6.8553 -8.7185 -5.4878 28 6 6.1824 -7.5237 -5.2707 29 6 5.9105 -7.0931 -3.9908 30 6 6.3131 -7.8614 -2.9031 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6846 -3.7146 0.8895 34 1 2.6847 -3.7145 -0.8905 35 1 -0.6711 -4.3892 1.2437 36 1 0.8860 -4.3863 2.1276 37 1 -0.6917 -6.7940 1.0656 38 1 0.0073 -6.5568 2.6997 39 1 1.3751 -8.0252 0.9010 40 1 2.2620 -6.8282 1.8963 41 1 3.6342 -5.0957 0.1519 42 1 5.7278 -5.6672 -1.4428 43 1 5.9574 -6.4650 0.1317 44 1 6.8300 -8.8968 0.1700 45 1 7.7873 -10.5579 -1.5935 46 1 7.7821 -10.4173 -4.6108 47 1 7.0611 -9.0416 -6.4976 48 1 5.8690 -6.9259 -6.1137 49 1 5.3860 -6.1624 -3.8323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732630357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:00 Heat of formation + Delta-G solvation = 21.233322 kcal Electronic energy + Delta-G solvation = -29238.262665 eV Core-core repulsion = 25358.104161 eV Total energy + Delta-G solvation = -3880.158504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34989 -41.12097 -39.26410 -37.81522 -36.22551 -34.82518 -33.82700 -33.30420 -31.46128 -30.20792 -29.81068 -29.12750 -27.27907 -26.31189 -24.23310 -23.65867 -22.66961 -22.18255 -21.58808 -21.00093 -20.38880 -19.27754 -18.54877 -18.16303 -17.39384 -16.99450 -16.58752 -16.46789 -16.29174 -16.17118 -15.71552 -15.27689 -15.24808 -14.96602 -14.77638 -14.75010 -14.56514 -14.29329 -13.94535 -13.56228 -13.47165 -13.21000 -13.08766 -12.83487 -12.77095 -12.50856 -12.48352 -12.36850 -12.16813 -11.96403 -11.78933 -11.74892 -11.74520 -11.57129 -11.47093 -11.12519 -10.92874 -10.54474 -10.11355 -9.08739 -8.99351 -8.56994 -7.94531 -5.23086 0.23049 0.70250 1.47104 1.48544 1.49568 1.57583 1.57976 1.89387 2.29561 2.56235 3.02011 3.38521 3.42219 3.63847 3.67048 3.75906 3.80064 3.85033 3.98708 4.11058 4.16629 4.17210 4.29026 4.36500 4.45656 4.48960 4.51992 4.56417 4.59642 4.66301 4.73337 4.79293 4.89573 4.94276 4.96983 5.05237 5.07169 5.17968 5.19611 5.24969 5.33266 5.46073 5.48581 5.52748 5.57293 5.70575 5.86445 5.89728 6.26750 6.29123 6.32234 6.49419 7.12083 7.34302 8.10110 8.32091 9.29123 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.002669 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.096135 B =10487.302608 C =12092.153797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.970 3.030 4 H -0.290 1.290 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.742 5.742 10 C 0.159 3.841 11 C -0.100 4.100 12 H 0.067 0.933 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.122 4.122 16 C 0.157 3.843 17 H 0.071 0.929 18 N -0.711 5.711 19 C 0.493 3.507 20 O -0.569 6.569 21 C 0.089 3.911 22 N -0.473 5.473 23 C 0.057 3.943 24 C -0.221 4.221 25 C -0.135 4.135 26 C -0.084 4.084 27 C -0.154 4.154 28 C -0.110 4.110 29 C -0.146 4.146 30 C 0.082 3.918 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.034 0.966 34 H 0.023 0.977 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.415 0.585 42 H 0.129 0.871 43 H 0.160 0.840 44 H 0.199 0.801 45 H 0.166 0.834 46 H 0.140 0.860 47 H 0.145 0.855 48 H 0.141 0.859 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.033 -19.536 -0.720 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.800 3.200 4 H -0.218 1.218 5 H -0.226 1.226 6 H -0.190 1.190 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.384 5.384 10 C 0.033 3.967 11 C -0.119 4.119 12 H 0.086 0.914 13 C -0.147 4.147 14 C -0.152 4.152 15 C -0.160 4.160 16 C 0.051 3.949 17 H 0.089 0.911 18 N -0.365 5.365 19 C 0.279 3.721 20 O -0.448 6.448 21 C -0.036 4.036 22 N -0.156 5.156 23 C -0.067 4.067 24 C -0.245 4.245 25 C -0.140 4.140 26 C -0.103 4.103 27 C -0.173 4.173 28 C -0.129 4.129 29 C -0.167 4.167 30 C -0.024 4.024 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.254 0.746 42 H 0.147 0.853 43 H 0.178 0.822 44 H 0.216 0.784 45 H 0.183 0.817 46 H 0.158 0.842 47 H 0.163 0.837 48 H 0.158 0.842 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.735 -19.903 -0.842 24.197 hybrid contribution -0.412 1.675 -0.050 1.726 sum 13.323 -18.228 -0.892 22.596 Atomic orbital electron populations 1.69817 1.06676 1.25981 1.59616 1.25546 0.96314 1.01091 1.03879 0.85183 0.77884 0.79674 0.77280 1.21757 1.22561 1.19009 1.19648 0.91649 0.85158 1.40885 0.90116 1.42537 1.05648 1.01001 1.89261 1.20832 0.93780 0.84398 0.97717 1.22096 0.97391 0.93221 0.99212 0.91444 1.22284 0.99755 0.96948 0.95682 1.22445 0.96866 0.93964 1.01946 1.22681 0.98209 0.98955 0.96191 1.21494 0.79463 0.94888 0.99054 0.91057 1.46306 1.07512 1.22743 1.59974 1.21424 0.90156 0.83328 0.77209 1.90742 1.77236 1.28426 1.48383 1.21833 0.88667 0.89875 1.03234 1.43556 1.48266 1.20161 1.03645 1.22360 0.97425 0.87175 0.99730 1.21974 1.10274 1.02572 0.89709 1.19661 1.03611 0.95660 0.95047 1.20585 0.99323 1.00140 0.90207 1.20946 1.01111 0.95435 0.99812 1.21115 0.98742 0.97267 0.95798 1.20248 1.04429 1.00568 0.91462 1.18504 1.01912 0.97699 0.84271 0.94126 0.79483 0.94785 0.95947 0.92521 0.91790 0.90982 0.89838 0.91536 0.90403 0.74576 0.85299 0.82225 0.78419 0.81673 0.84231 0.83726 0.84158 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.06 13.06 21.65 0.28 -57.77 16 2 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.97 44.56 29.55 68.60 2.03 46.59 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.24 -12.72 9.99 84.03 0.84 -11.88 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.74 -35.21 5.45 -343.45 -1.87 -37.08 16 10 C 0.16 5.56 4.18 86.38 0.36 5.92 16 11 C -0.10 -2.96 2.96 -10.07 -0.03 -2.99 16 12 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 13 C -0.11 -3.03 6.08 31.67 0.19 -2.84 16 14 C -0.11 -2.47 6.91 31.89 0.22 -2.25 16 15 C -0.12 -2.69 6.52 31.67 0.21 -2.49 16 16 C 0.16 4.03 3.21 45.72 0.15 4.18 16 17 H 0.07 2.11 7.61 -2.39 -0.02 2.09 16 18 N -0.71 -16.06 4.42 -439.09 -1.94 -18.00 16 19 C 0.49 11.88 7.89 87.66 0.69 12.57 16 20 O -0.57 -18.93 16.10 -3.04 -0.05 -18.97 16 21 C 0.09 1.52 6.48 85.63 0.56 2.08 16 22 N -0.47 -10.50 2.27 -519.98 -1.18 -11.68 16 23 C 0.06 1.08 11.27 83.00 0.94 2.02 16 24 C -0.22 -4.59 11.08 23.51 0.26 -4.33 16 25 C -0.14 -3.41 6.37 -20.20 -0.13 -3.54 16 26 C -0.08 -1.83 10.05 22.23 0.22 -1.60 16 27 C -0.15 -3.13 9.97 22.04 0.22 -2.91 16 28 C -0.11 -2.45 10.01 22.30 0.22 -2.23 16 29 C -0.15 -3.76 10.00 22.37 0.22 -3.54 16 30 C 0.08 2.17 6.80 39.03 0.27 2.43 16 31 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 32 H 0.37 19.29 7.55 -92.71 -0.70 18.59 16 33 H 0.03 1.11 7.12 -2.39 -0.02 1.09 16 34 H 0.02 0.79 7.40 -2.38 -0.02 0.77 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 1.89 7.77 -2.39 -0.02 1.87 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.59 8.05 -2.39 -0.02 1.57 16 41 H 0.41 8.25 5.84 -92.71 -0.54 7.71 16 42 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.16 1.41 8.12 -2.39 -0.02 1.39 16 44 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 45 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 46 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 47 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 48 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 49 H 0.11 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -74.04 400.25 2.86 -71.18 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.28 Total: 40.91 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 5.87 Total: -15.16 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -4.71 Total: -124.54 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.05 Total: -18.97 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -74.04 2.86 -71.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732630357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.413 kcal (2) G-P(sol) polarization free energy of solvation -74.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds