Wall clock time and date at job start Wed Apr 1 2020 00:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00078 * 2 1 4 4 H 1.48498 * 109.46992 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47376 * 300.00253 * 3 2 1 6 6 H 1.48509 * 109.46807 * 60.00344 * 3 2 1 7 7 C 1.38815 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99964 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00165 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47169 * 180.02562 * 10 9 7 12 12 H 1.09006 * 110.54519 * 303.84426 * 11 10 9 13 13 C 1.54892 * 110.48655 * 66.45675 * 11 10 9 14 14 C 1.54891 * 102.74959 * 156.61985 * 13 11 10 15 15 C 1.54266 * 104.31343 * 321.99283 * 14 13 11 16 16 C 1.54224 * 106.42656 * 23.64256 * 15 14 13 17 17 H 1.08998 * 110.06034 * 119.30842 * 16 15 14 18 18 N 1.46509 * 110.00096 * 240.68917 * 16 15 14 19 19 C 1.34776 * 120.00099 * 272.19750 * 18 16 15 20 20 O 1.21278 * 119.99629 * 359.97438 * 19 18 16 21 21 C 1.50692 * 119.99803 * 180.02562 * 19 18 16 22 22 N 1.46502 * 109.46909 * 179.97438 * 21 19 18 23 23 C 1.36834 * 125.06323 * 264.69384 * 22 21 19 24 24 C 1.34241 * 109.93016 * 179.81589 * 23 22 21 25 25 C 1.46490 * 106.99423 * 0.43693 * 24 23 22 26 26 C 1.39628 * 134.02793 * 179.71034 * 25 24 23 27 27 C 1.36633 * 119.76341 * 180.02562 * 26 25 24 28 28 C 1.38829 * 120.52534 * 359.97438 * 27 26 25 29 29 C 1.37744 * 120.66969 * 0.02754 * 28 27 26 30 30 C 1.37686 * 125.06486 * 84.99907 * 22 21 19 31 31 H 0.97003 * 120.00121 * 359.97438 * 1 2 3 32 32 H 0.97009 * 120.00198 * 0.02562 * 9 7 2 33 33 H 1.08999 * 109.46900 * 60.00349 * 10 9 7 34 34 H 1.08998 * 109.47282 * 300.00496 * 10 9 7 35 35 H 1.09000 * 110.75513 * 38.30845 * 13 11 10 36 36 H 1.09002 * 110.75596 * 274.93555 * 13 11 10 37 37 H 1.09002 * 110.48740 * 80.73781 * 14 13 11 38 38 H 1.08998 * 110.48604 * 203.24665 * 14 13 11 39 39 H 1.08998 * 110.03538 * 142.96002 * 15 14 13 40 40 H 1.09004 * 110.03276 * 264.39171 * 15 14 13 41 41 H 0.97007 * 119.99530 * 92.19604 * 18 16 15 42 42 H 1.08996 * 109.47250 * 299.99514 * 21 19 18 43 43 H 1.09003 * 109.47211 * 60.00026 * 21 19 18 44 44 H 1.08000 * 125.03306 * 359.97438 * 23 22 21 45 45 H 1.07995 * 126.49948 * 180.15033 * 24 23 22 46 46 H 1.07999 * 120.12365 * 0.02603 * 26 25 24 47 47 H 1.07997 * 119.73289 * 179.97438 * 27 26 25 48 48 H 1.08000 * 119.66574 * 179.97438 * 28 27 26 49 49 H 1.07996 * 120.11218 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.3834 -4.7416 0.8460 13 6 0.2705 -4.8542 -1.3320 14 6 -0.1836 -6.3324 -1.4209 15 6 1.0170 -7.1336 -0.8764 16 6 1.8110 -6.1689 0.0278 17 1 1.8452 -6.5545 1.0468 18 7 3.1709 -6.0011 -0.4907 19 6 4.1452 -6.8535 -0.1155 20 8 3.8962 -7.7591 0.6517 21 6 5.5441 -6.6804 -0.6485 22 7 6.4102 -7.7242 -0.0947 23 6 7.2019 -7.5832 1.0123 24 6 7.8627 -8.7271 1.2511 25 6 7.4692 -9.6750 0.2058 26 6 7.8115 -10.9973 -0.0839 27 6 7.2540 -11.6211 -1.1642 28 6 6.3492 -10.9508 -1.9762 29 6 5.9976 -9.6461 -1.7087 30 6 6.5533 -8.9913 -0.6141 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 2.6853 -3.7150 0.8878 34 1 2.6841 -3.7142 -0.8921 35 1 0.9146 -4.5968 -2.1728 36 1 -0.5907 -4.1876 -1.2854 37 1 -1.0653 -6.4985 -0.8020 38 1 -0.3878 -6.6071 -2.4557 39 1 0.6646 -7.9868 -0.2969 40 1 1.6431 -7.4746 -1.7009 41 1 3.3701 -5.2764 -1.1041 42 1 5.5309 -6.7577 -1.7356 43 1 5.9249 -5.7011 -0.3584 44 1 7.2814 -6.6855 1.6075 45 1 8.5565 -8.9118 2.0578 46 1 8.5143 -11.5252 0.5435 47 1 7.5194 -12.6437 -1.3881 48 1 5.9173 -11.4571 -2.8268 49 1 5.2931 -9.1332 -2.3466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732630358.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:04 Heat of formation + Delta-G solvation = 37.294806 kcal Electronic energy + Delta-G solvation = -29205.607282 eV Core-core repulsion = 25326.145257 eV Total energy + Delta-G solvation = -3879.462026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.53680 -40.04286 -38.10141 -36.99692 -34.47834 -33.64927 -32.99693 -31.50263 -30.64382 -29.02482 -28.68830 -28.16799 -26.45601 -24.57927 -22.85389 -22.43640 -21.82775 -21.28551 -20.38632 -20.18233 -19.30226 -17.83191 -17.37720 -17.05462 -16.60244 -15.89528 -15.54095 -15.32501 -15.07903 -14.72540 -14.70397 -14.19773 -14.05749 -13.88333 -13.70951 -13.49715 -13.22236 -13.11242 -12.92521 -12.76365 -12.49007 -12.26346 -11.75238 -11.69779 -11.59766 -11.32101 -10.97247 -10.95292 -10.93963 -10.86558 -10.56527 -10.42650 -10.39303 -10.10743 -10.03685 -9.77164 -9.68257 -9.06757 -8.95976 -8.26046 -7.77044 -7.01164 -5.84768 -3.13907 1.03880 1.53125 2.38926 2.45244 2.67191 3.21872 3.37134 3.42521 3.45052 3.84827 4.41879 4.45297 4.50702 4.57624 4.68723 4.71662 4.76120 4.77583 4.90215 4.99855 5.01562 5.32797 5.35896 5.38889 5.46094 5.55321 5.57179 5.59903 5.68214 5.70366 5.78444 5.83411 5.85391 5.95317 5.99260 6.01234 6.14154 6.21234 6.35757 6.41277 6.47906 6.50171 6.54904 6.64813 6.66110 6.68471 6.72237 7.08619 7.12480 7.43684 7.61028 8.10163 8.33751 9.45351 10.02393 10.36904 11.37927 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.002451 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.463007 B =11421.055512 C =12825.916418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.166 3.834 11 C -0.107 4.107 12 H 0.087 0.913 13 C -0.112 4.112 14 C -0.126 4.126 15 C -0.130 4.130 16 C 0.149 3.851 17 H 0.088 0.912 18 N -0.714 5.714 19 C 0.491 3.509 20 O -0.525 6.525 21 C 0.088 3.912 22 N -0.467 5.467 23 C 0.063 3.937 24 C -0.206 4.206 25 C -0.108 4.108 26 C -0.073 4.073 27 C -0.150 4.150 28 C -0.103 4.103 29 C -0.124 4.124 30 C 0.110 3.890 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.405 0.595 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.168 0.832 45 H 0.146 0.854 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.648 -20.155 -3.999 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.038 3.962 11 C -0.126 4.126 12 H 0.106 0.894 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.044 3.956 17 H 0.106 0.894 18 N -0.368 5.368 19 C 0.275 3.725 20 O -0.400 6.400 21 C -0.038 4.038 22 N -0.150 5.150 23 C -0.062 4.062 24 C -0.231 4.231 25 C -0.112 4.112 26 C -0.091 4.091 27 C -0.170 4.170 28 C -0.122 4.122 29 C -0.145 4.145 30 C 0.004 3.996 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.036 0.964 34 H 0.031 0.969 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.243 0.757 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.185 0.815 45 H 0.164 0.836 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.416 -20.416 -3.538 23.657 hybrid contribution 0.064 1.478 -0.238 1.499 sum 11.480 -18.938 -3.776 22.465 Atomic orbital electron populations 1.69667 1.05112 1.25633 1.57534 1.24751 0.95531 0.97740 1.02870 0.86129 0.78736 0.84114 0.77249 1.20589 1.21822 1.21824 1.19231 0.90970 0.84140 1.42937 0.91237 1.42347 1.05921 0.99787 1.89313 1.20552 0.93027 0.85430 0.97207 1.22477 0.97785 0.93140 0.99236 0.89427 1.22497 1.00241 0.95324 0.96881 1.22392 0.97540 0.95792 1.00620 1.22614 0.97067 0.98040 0.99135 1.21697 0.80137 0.95665 0.98065 0.89391 1.46271 1.09407 1.32157 1.48996 1.20873 0.86934 0.82650 0.82051 1.90761 1.82699 1.31938 1.34609 1.21623 0.88779 0.92603 1.00754 1.43368 1.36806 1.09994 1.24805 1.21816 0.94287 1.00337 0.89725 1.21631 1.06922 0.92665 1.01860 1.19200 1.00282 0.94542 0.97209 1.20242 0.99287 0.92552 0.97058 1.20587 0.99696 1.00045 0.96624 1.20756 0.98160 0.93583 0.99705 1.19995 1.02206 0.95357 0.96942 1.18185 0.99440 0.84976 0.96988 0.93490 0.78145 0.96354 0.96875 0.91418 0.90730 0.91634 0.91895 0.91498 0.91669 0.75701 0.86776 0.85931 0.81499 0.83597 0.86250 0.86272 0.85999 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.73 -17.34 5.44 -59.91 -0.33 -17.67 16 10 C 0.17 3.00 4.87 -4.04 -0.02 2.98 16 11 C -0.11 -1.59 2.89 -88.96 -0.26 -1.85 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 13 C -0.11 -1.56 6.01 -24.74 -0.15 -1.71 16 14 C -0.13 -1.45 6.82 -25.07 -0.17 -1.62 16 15 C -0.13 -1.54 6.62 -25.43 -0.17 -1.71 16 16 C 0.15 1.96 3.13 -66.62 -0.21 1.75 16 17 H 0.09 1.30 7.56 -51.93 -0.39 0.90 16 18 N -0.71 -8.39 4.35 -52.54 -0.23 -8.62 16 19 C 0.49 6.15 7.90 -10.99 -0.09 6.07 16 20 O -0.52 -8.80 16.08 5.56 0.09 -8.71 16 21 C 0.09 0.83 6.48 -5.20 -0.03 0.80 16 22 N -0.47 -5.44 2.27 -115.71 -0.26 -5.71 16 23 C 0.06 0.68 11.27 -16.73 -0.19 0.49 16 24 C -0.21 -2.31 11.08 -37.67 -0.42 -2.73 16 25 C -0.11 -1.36 6.37 -105.14 -0.67 -2.03 16 26 C -0.07 -0.79 10.05 -39.64 -0.40 -1.19 16 27 C -0.15 -1.49 9.97 -39.94 -0.40 -1.89 16 28 C -0.10 -1.05 10.01 -39.54 -0.40 -1.44 16 29 C -0.12 -1.44 10.00 -39.43 -0.39 -1.83 16 30 C 0.11 1.41 6.80 -83.99 -0.57 0.83 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.38 9.70 7.52 -40.82 -0.31 9.40 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.01 0.23 6.26 -51.93 -0.33 -0.09 16 35 H 0.07 0.96 8.02 -51.93 -0.42 0.54 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.76 7.92 -51.93 -0.41 0.35 16 41 H 0.41 4.25 6.47 -40.82 -0.26 3.99 16 42 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.12 0.86 8.12 -51.93 -0.42 0.44 16 44 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 45 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 49 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 401.18 15.07 6.05 6.05 Total: -1.00 -33.87 401.18 -11.34 -45.21 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -7.58 Total: 11.48 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -4.77 Total: -12.13 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.09 Total: -58.63 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.87 -11.34 -45.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732630358.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.502 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds