Wall clock time and date at job start Wed Apr 1 2020 00:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00078 * 2 1 4 4 H 1.48498 * 109.46992 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47376 * 300.00253 * 3 2 1 6 6 H 1.48509 * 109.46807 * 60.00344 * 3 2 1 7 7 C 1.38815 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99964 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00165 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47169 * 180.02562 * 10 9 7 12 12 H 1.09006 * 110.54519 * 303.84426 * 11 10 9 13 13 C 1.54892 * 110.48655 * 66.45675 * 11 10 9 14 14 C 1.54891 * 102.74959 * 156.61985 * 13 11 10 15 15 C 1.54266 * 104.31343 * 321.99283 * 14 13 11 16 16 C 1.54224 * 106.42656 * 23.64256 * 15 14 13 17 17 H 1.08998 * 110.06034 * 119.30842 * 16 15 14 18 18 N 1.46509 * 110.00096 * 240.68917 * 16 15 14 19 19 C 1.34776 * 120.00099 * 272.19750 * 18 16 15 20 20 O 1.21278 * 119.99629 * 359.97438 * 19 18 16 21 21 C 1.50692 * 119.99803 * 180.02562 * 19 18 16 22 22 N 1.46502 * 109.46909 * 179.97438 * 21 19 18 23 23 C 1.36834 * 125.06323 * 264.69384 * 22 21 19 24 24 C 1.34241 * 109.93016 * 179.81589 * 23 22 21 25 25 C 1.46490 * 106.99423 * 0.43693 * 24 23 22 26 26 C 1.39628 * 134.02793 * 179.71034 * 25 24 23 27 27 C 1.36633 * 119.76341 * 180.02562 * 26 25 24 28 28 C 1.38829 * 120.52534 * 359.97438 * 27 26 25 29 29 C 1.37744 * 120.66969 * 0.02754 * 28 27 26 30 30 C 1.37686 * 125.06486 * 84.99907 * 22 21 19 31 31 H 0.97003 * 120.00121 * 359.97438 * 1 2 3 32 32 H 0.97009 * 120.00198 * 0.02562 * 9 7 2 33 33 H 1.08999 * 109.46900 * 60.00349 * 10 9 7 34 34 H 1.08998 * 109.47282 * 300.00496 * 10 9 7 35 35 H 1.09000 * 110.75513 * 38.30845 * 13 11 10 36 36 H 1.09002 * 110.75596 * 274.93555 * 13 11 10 37 37 H 1.09002 * 110.48740 * 80.73781 * 14 13 11 38 38 H 1.08998 * 110.48604 * 203.24665 * 14 13 11 39 39 H 1.08998 * 110.03538 * 142.96002 * 15 14 13 40 40 H 1.09004 * 110.03276 * 264.39171 * 15 14 13 41 41 H 0.97007 * 119.99530 * 92.19604 * 18 16 15 42 42 H 1.08996 * 109.47250 * 299.99514 * 21 19 18 43 43 H 1.09003 * 109.47211 * 60.00026 * 21 19 18 44 44 H 1.08000 * 125.03306 * 359.97438 * 23 22 21 45 45 H 1.07995 * 126.49948 * 180.15033 * 24 23 22 46 46 H 1.07999 * 120.12365 * 0.02603 * 26 25 24 47 47 H 1.07997 * 119.73289 * 179.97438 * 27 26 25 48 48 H 1.08000 * 119.66574 * 179.97438 * 28 27 26 49 49 H 1.07996 * 120.11218 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.3834 -4.7416 0.8460 13 6 0.2705 -4.8542 -1.3320 14 6 -0.1836 -6.3324 -1.4209 15 6 1.0170 -7.1336 -0.8764 16 6 1.8110 -6.1689 0.0278 17 1 1.8452 -6.5545 1.0468 18 7 3.1709 -6.0011 -0.4907 19 6 4.1452 -6.8535 -0.1155 20 8 3.8962 -7.7591 0.6517 21 6 5.5441 -6.6804 -0.6485 22 7 6.4102 -7.7242 -0.0947 23 6 7.2019 -7.5832 1.0123 24 6 7.8627 -8.7271 1.2511 25 6 7.4692 -9.6750 0.2058 26 6 7.8115 -10.9973 -0.0839 27 6 7.2540 -11.6211 -1.1642 28 6 6.3492 -10.9508 -1.9762 29 6 5.9976 -9.6461 -1.7087 30 6 6.5533 -8.9913 -0.6141 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 2.6853 -3.7150 0.8878 34 1 2.6841 -3.7142 -0.8921 35 1 0.9146 -4.5968 -2.1728 36 1 -0.5907 -4.1876 -1.2854 37 1 -1.0653 -6.4985 -0.8020 38 1 -0.3878 -6.6071 -2.4557 39 1 0.6646 -7.9868 -0.2969 40 1 1.6431 -7.4746 -1.7009 41 1 3.3701 -5.2764 -1.1041 42 1 5.5309 -6.7577 -1.7356 43 1 5.9249 -5.7011 -0.3584 44 1 7.2814 -6.6855 1.6075 45 1 8.5565 -8.9118 2.0578 46 1 8.5143 -11.5252 0.5435 47 1 7.5194 -12.6437 -1.3881 48 1 5.9173 -11.4571 -2.8268 49 1 5.2931 -9.1332 -2.3466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732630358.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:03 Heat of formation + Delta-G solvation = 18.506174 kcal Electronic energy + Delta-G solvation = -29206.422019 eV Core-core repulsion = 25326.145257 eV Total energy + Delta-G solvation = -3880.276762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34431 -41.09222 -39.21413 -37.79928 -36.25209 -34.69882 -33.81026 -33.31665 -31.43808 -30.22599 -29.80041 -29.14667 -27.36139 -26.28042 -24.09388 -23.64786 -22.68140 -22.18044 -21.43787 -21.02460 -20.53180 -19.27646 -18.56872 -18.14978 -17.37023 -16.98061 -16.66173 -16.30903 -16.26264 -16.12973 -15.69739 -15.37549 -15.18192 -15.00907 -14.80880 -14.70418 -14.50765 -14.34172 -13.98729 -13.62110 -13.49808 -13.18304 -13.08061 -12.86145 -12.66934 -12.49095 -12.46883 -12.29607 -12.14163 -11.99819 -11.83476 -11.73336 -11.66307 -11.56651 -11.48779 -11.11069 -10.92041 -10.53411 -10.11941 -9.07556 -8.98719 -8.56839 -7.94595 -5.22843 0.24251 0.72072 1.48132 1.48807 1.49212 1.57512 1.58249 1.89038 2.30018 2.55964 3.03703 3.37976 3.42851 3.63681 3.67451 3.77645 3.80170 3.86350 3.98357 4.12453 4.17595 4.18285 4.30863 4.36324 4.48049 4.53302 4.54817 4.57278 4.61110 4.66641 4.75727 4.79735 4.82989 4.95371 5.00507 5.07061 5.09062 5.19030 5.20993 5.24790 5.35355 5.45953 5.51609 5.52828 5.58541 5.72270 5.87391 5.90314 6.27215 6.29706 6.32490 6.51013 7.14202 7.34579 8.10579 8.32889 9.29099 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.002451 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.463007 B =11421.055512 C =12825.916418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.298 1.298 7 C -0.240 4.240 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.167 3.833 11 C -0.099 4.099 12 H 0.075 0.925 13 C -0.109 4.109 14 C -0.115 4.115 15 C -0.122 4.122 16 C 0.157 3.843 17 H 0.071 0.929 18 N -0.707 5.707 19 C 0.494 3.506 20 O -0.570 6.570 21 C 0.090 3.910 22 N -0.473 5.473 23 C 0.052 3.948 24 C -0.222 4.222 25 C -0.138 4.138 26 C -0.086 4.086 27 C -0.154 4.154 28 C -0.107 4.107 29 C -0.142 4.142 30 C 0.084 3.916 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.012 0.988 34 H 0.035 0.965 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.414 0.586 42 H 0.140 0.860 43 H 0.151 0.849 44 H 0.191 0.809 45 H 0.162 0.838 46 H 0.136 0.864 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.071 -20.939 -5.144 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.225 1.225 7 C -0.371 4.371 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.040 3.960 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.146 4.146 14 C -0.153 4.153 15 C -0.161 4.161 16 C 0.051 3.949 17 H 0.089 0.911 18 N -0.361 5.361 19 C 0.280 3.720 20 O -0.449 6.449 21 C -0.036 4.036 22 N -0.156 5.156 23 C -0.072 4.072 24 C -0.246 4.246 25 C -0.142 4.142 26 C -0.104 4.104 27 C -0.173 4.173 28 C -0.126 4.126 29 C -0.163 4.163 30 C -0.021 4.021 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.030 0.970 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.253 0.747 42 H 0.157 0.843 43 H 0.168 0.832 44 H 0.208 0.792 45 H 0.180 0.820 46 H 0.154 0.846 47 H 0.163 0.837 48 H 0.164 0.836 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.883 -21.216 -4.702 25.263 hybrid contribution -0.351 1.621 0.139 1.665 sum 12.532 -19.594 -4.562 23.703 Atomic orbital electron populations 1.69819 1.06604 1.25899 1.59674 1.25541 0.96343 1.01048 1.03940 0.85120 0.78405 0.80043 0.76470 1.18794 1.22143 1.22534 1.19654 0.91552 0.85203 1.40733 0.90352 1.42560 1.05692 1.01032 1.89203 1.20696 0.93472 0.84294 0.97494 1.22333 0.97207 0.92823 0.99500 0.90703 1.22429 0.99369 0.96720 0.96110 1.22327 0.97449 0.93673 1.01815 1.22541 0.96971 0.97605 0.98945 1.21506 0.80969 0.94619 0.97798 0.91127 1.46177 1.08842 1.32291 1.48764 1.21405 0.87981 0.81615 0.81043 1.90746 1.83544 1.33840 1.36745 1.21832 0.86372 0.93332 1.02018 1.43543 1.36980 1.10098 1.24993 1.22298 0.93948 1.01182 0.89745 1.21963 1.07590 0.92778 1.02272 1.19639 1.01027 0.95584 0.97980 1.20570 0.99786 0.92320 0.97758 1.20954 0.99122 1.01183 0.96057 1.21135 0.97863 0.93308 1.00312 1.20266 1.02757 0.96134 0.97121 1.18537 1.00114 0.85776 0.97722 0.94120 0.79392 0.97040 0.94725 0.91297 0.92648 0.91193 0.90169 0.91406 0.90961 0.74747 0.84269 0.83183 0.79183 0.82011 0.84601 0.83748 0.83639 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.78 13.06 21.65 0.28 -57.50 16 2 C -0.08 -4.24 5.50 84.86 0.47 -3.78 16 3 Si 0.97 44.61 29.55 68.60 2.03 46.64 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 7 C -0.24 -12.65 9.99 84.03 0.84 -11.81 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -35.19 5.44 -343.46 -1.87 -37.06 16 10 C 0.17 5.89 4.87 86.38 0.42 6.31 16 11 C -0.10 -2.89 2.89 -9.72 -0.03 -2.92 16 12 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 13 C -0.11 -2.92 6.01 31.89 0.19 -2.73 16 14 C -0.12 -2.45 6.82 31.67 0.22 -2.23 16 15 C -0.12 -2.68 6.62 31.44 0.21 -2.48 16 16 C 0.16 3.97 3.13 45.83 0.14 4.11 16 17 H 0.07 2.08 7.56 -2.39 -0.02 2.06 16 18 N -0.71 -15.41 4.35 -438.54 -1.91 -17.32 16 19 C 0.49 11.69 7.90 87.65 0.69 12.38 16 20 O -0.57 -18.91 16.08 -3.02 -0.05 -18.96 16 21 C 0.09 1.50 6.48 85.63 0.56 2.05 16 22 N -0.47 -10.50 2.27 -520.00 -1.18 -11.68 16 23 C 0.05 1.09 11.27 83.00 0.94 2.03 16 24 C -0.22 -4.87 11.08 23.51 0.26 -4.61 16 25 C -0.14 -3.42 6.37 -20.20 -0.13 -3.55 16 26 C -0.09 -1.80 10.05 22.23 0.22 -1.57 16 27 C -0.15 -2.83 9.97 22.04 0.22 -2.61 16 28 C -0.11 -2.03 10.01 22.29 0.22 -1.80 16 29 C -0.14 -3.15 10.00 22.37 0.22 -2.93 16 30 C 0.08 2.10 6.80 39.03 0.27 2.37 16 31 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.37 19.17 7.52 -92.70 -0.70 18.48 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.04 1.10 6.26 -2.39 -0.01 1.09 16 35 H 0.07 1.84 8.02 -2.39 -0.02 1.82 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.51 7.92 -2.38 -0.02 1.49 16 41 H 0.41 7.68 6.47 -92.70 -0.60 7.08 16 42 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.15 1.65 8.12 -2.39 -0.02 1.63 16 44 H 0.19 2.77 8.06 -2.91 -0.02 2.74 16 45 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 46 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 47 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 48 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 49 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -73.77 401.18 2.90 -70.87 By element: Atomic # 1 Polarization: 39.12 SS G_CDS: -0.34 Total: 38.79 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 5.93 Total: -13.78 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -4.67 Total: -123.55 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.05 Total: -18.96 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -73.77 2.90 -70.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732630358.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.377 kcal (2) G-P(sol) polarization free energy of solvation -73.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds