Wall clock time and date at job start Wed Apr 1 2020 01:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48500 * 109.46776 * 239.99778 * 3 2 1 5 5 H 1.48501 * 109.46779 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47255 * 119.99905 * 3 2 1 7 7 C 1.38957 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99643 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99428 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00303 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99600 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47124 * 179.97438 * 12 10 9 14 14 C 1.47535 * 110.99849 * 49.45234 * 13 12 10 15 15 C 1.54512 * 107.20526 * 124.62458 * 14 13 12 16 16 C 1.54404 * 102.56426 * 21.73883 * 15 14 13 17 17 H 1.09004 * 109.99261 * 80.93821 * 16 15 14 18 18 C 1.48624 * 110.99870 * 169.99715 * 13 12 10 19 19 H 1.09006 * 112.30667 * 91.43164 * 18 13 12 20 20 C 1.53003 * 107.12802 * 328.82139 * 18 13 12 21 21 C 1.52746 * 110.79505 * 191.91843 * 20 18 13 22 22 C 1.53459 * 108.44349 * 63.75734 * 21 20 18 23 23 N 1.45119 * 111.60656 * 203.27331 * 16 15 14 24 24 C 1.34774 * 119.58298 * 248.69753 * 23 16 15 25 25 O 1.21287 * 120.00022 * 0.02562 * 24 23 16 26 26 C 1.50700 * 120.00211 * 180.02562 * 24 23 16 27 27 C 1.53000 * 109.47203 * 180.02562 * 26 24 23 28 28 C 1.52996 * 109.47384 * 180.02562 * 27 26 24 29 29 F 1.39895 * 109.47406 * 180.02562 * 28 27 26 30 30 H 0.96993 * 120.00401 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00300 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.47568 * 60.00066 * 12 10 9 33 33 H 1.08998 * 109.47301 * 299.99680 * 12 10 9 34 34 H 1.09001 * 109.88852 * 244.00903 * 14 13 12 35 35 H 1.09004 * 109.89232 * 5.03665 * 14 13 12 36 36 H 1.09004 * 110.77593 * 263.46855 * 15 14 13 37 37 H 1.08999 * 110.78448 * 140.01422 * 15 14 13 38 38 H 1.09001 * 109.21682 * 71.58080 * 20 18 13 39 39 H 1.09005 * 109.21429 * 312.25629 * 20 18 13 40 40 H 1.08998 * 109.63887 * 183.44301 * 21 20 18 41 41 H 1.08994 * 109.63951 * 304.07178 * 21 20 18 42 42 H 1.09009 * 109.83307 * 61.46596 * 22 21 20 43 43 H 1.09000 * 109.83228 * 182.34926 * 22 21 20 44 44 H 1.09000 * 109.47241 * 299.99902 * 26 24 23 45 45 H 1.08995 * 109.47179 * 60.00078 * 26 24 23 46 46 H 1.08998 * 109.47459 * 300.00458 * 27 26 24 47 47 H 1.09004 * 109.47013 * 60.00214 * 27 26 24 48 48 H 1.09006 * 109.47094 * 300.00277 * 28 27 26 49 49 H 1.08995 * 109.47109 * 59.99893 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 3.2226 -5.8000 1.0451 15 6 3.1986 -7.0664 1.9300 16 6 2.5499 -8.1140 0.9995 17 1 3.2954 -8.5148 0.3126 18 6 1.5059 -7.2724 0.2388 19 1 1.2021 -7.7578 -0.6887 20 6 0.3014 -6.9785 1.1354 21 6 -0.3009 -8.2738 1.6763 22 6 0.7424 -8.9584 2.5695 23 7 1.9398 -9.1935 1.7535 24 6 2.4791 -10.4276 1.7036 25 8 3.4684 -10.6304 1.0319 26 6 1.8529 -11.5556 2.4824 27 6 2.6539 -12.8391 2.2544 28 6 2.0179 -13.9845 3.0446 29 9 2.7506 -15.1579 2.8366 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3907 -0.0005 32 1 0.6174 -4.9206 -0.8914 33 1 0.6168 -4.9209 0.8886 34 1 4.2051 -5.6863 0.5869 35 1 2.9894 -4.9203 1.6451 36 1 2.5872 -6.9061 2.8180 37 1 4.2102 -7.3658 2.2042 38 1 -0.4540 -6.4454 0.5580 39 1 0.6197 -6.3547 1.9707 40 1 -1.1921 -8.0470 2.2615 41 1 -0.5610 -8.9312 0.8468 42 1 0.9898 -8.3118 3.4116 43 1 0.3505 -9.9076 2.9350 44 1 1.8561 -11.3097 3.5443 45 1 0.8265 -11.7031 2.1467 46 1 2.6513 -13.0853 1.1926 47 1 3.6803 -12.6914 2.5906 48 1 2.0202 -13.7385 4.1065 49 1 0.9917 -14.1320 2.7081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733607875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:47 Heat of formation + Delta-G solvation = -109.776601 kcal Electronic energy + Delta-G solvation = -30543.959201 eV Core-core repulsion = 26227.350456 eV Total energy + Delta-G solvation = -4316.608745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.97471 -41.19323 -39.39737 -37.90249 -35.85823 -34.49399 -33.92403 -33.23197 -31.39487 -30.95736 -29.27133 -27.82692 -26.56281 -25.12382 -24.19692 -22.98318 -22.46945 -21.05181 -20.33873 -18.97049 -18.67142 -17.81534 -17.70924 -16.94795 -16.53663 -16.07183 -15.88948 -15.80653 -15.60254 -15.10407 -14.79154 -14.60353 -14.33958 -14.24196 -13.91259 -13.82304 -13.66259 -13.43136 -13.01412 -12.79626 -12.50885 -12.32894 -12.10550 -11.98122 -11.94158 -11.71028 -11.61835 -11.50324 -11.42605 -11.12427 -11.08593 -11.01397 -10.95312 -10.72729 -10.46034 -10.33916 -10.23619 -10.00323 -9.49859 -8.82562 -8.33131 -7.98574 -7.89609 -6.44581 -3.85353 2.34415 2.63832 3.18002 3.23967 3.28409 3.86249 3.92955 4.03642 4.19698 4.25836 4.30357 4.41073 4.56800 4.58040 4.58934 4.66716 4.73050 4.76680 4.86371 4.97929 5.07975 5.11045 5.18200 5.21692 5.25377 5.30678 5.38757 5.39874 5.51071 5.59598 5.67612 5.74182 5.80038 5.80806 5.85975 5.93294 6.01372 6.17913 6.23226 6.34373 6.38566 6.63146 7.11597 7.25863 7.27771 7.52373 7.91875 8.02812 8.58131 9.14838 9.50804 10.02137 10.72976 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.035533 B = 0.001999 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.819251 B =14000.809185 C =14424.018488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.033 3.967 13 N -0.504 5.504 14 C 0.066 3.934 15 C -0.156 4.156 16 C 0.137 3.863 17 H 0.112 0.888 18 C 0.069 3.931 19 H 0.096 0.904 20 C -0.150 4.150 21 C -0.131 4.131 22 C 0.102 3.898 23 N -0.598 5.598 24 C 0.512 3.488 25 O -0.536 6.536 26 C -0.138 4.138 27 C -0.140 4.140 28 C 0.062 3.938 29 F -0.218 7.218 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 -22.982 8.476 25.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.224 3.776 11 O -0.465 6.465 12 C -0.099 4.099 13 N -0.228 5.228 14 C -0.061 4.061 15 C -0.196 4.196 16 C 0.033 3.967 17 H 0.130 0.870 18 C -0.040 4.040 19 H 0.114 0.886 20 C -0.189 4.189 21 C -0.170 4.170 22 C -0.020 4.020 23 N -0.330 5.330 24 C 0.300 3.700 25 O -0.413 6.413 26 C -0.178 4.178 27 C -0.178 4.178 28 C 0.007 3.993 29 F -0.199 7.199 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.093 0.907 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.766 -22.910 7.611 24.433 hybrid contribution -0.806 1.083 0.818 1.578 sum -4.572 -21.827 8.428 23.841 Atomic orbital electron populations 1.69596 1.05929 1.28286 1.50467 1.25259 0.95633 0.99720 0.97268 0.85919 0.78772 0.80456 0.79091 1.19867 1.20972 1.19933 1.19652 0.93342 0.82211 1.47726 0.87958 1.41843 1.09163 1.04570 1.64244 1.19778 0.88435 0.84750 0.84600 1.90535 1.13692 1.86879 1.55370 1.22224 0.95007 0.90752 1.01902 1.63683 1.12157 0.99873 1.47074 1.22730 0.97320 0.94963 0.91123 1.23181 1.01270 0.96475 0.98668 1.21578 0.95027 0.86545 0.93551 0.87025 1.22906 0.92436 0.91066 0.97583 0.88579 1.22238 0.98764 0.97546 1.00355 1.21879 0.97830 0.97470 0.99820 1.21909 0.84935 1.01433 0.93752 1.47562 1.28952 1.08857 1.47634 1.20617 0.84144 0.83411 0.81816 1.90730 1.25787 1.82919 1.41821 1.21586 1.01047 0.93557 1.01601 1.21932 1.00824 0.92558 1.02505 1.21995 0.94840 0.81259 1.01193 1.92778 1.80007 1.50491 1.96634 0.91812 0.77499 0.89359 0.92315 0.89677 0.91486 0.91668 0.90738 0.90578 0.91208 0.90384 0.91122 0.91008 0.89422 0.88511 0.88435 0.89850 0.89867 0.90737 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 10 C 0.44 10.11 7.05 -10.99 -0.08 10.03 16 11 O -0.58 -15.23 13.40 5.55 0.07 -15.16 16 12 C 0.03 0.56 4.62 -4.97 -0.02 0.54 16 13 N -0.50 -8.29 5.20 -224.43 -1.17 -9.46 16 14 C 0.07 1.12 4.84 -2.68 -0.01 1.11 16 15 C -0.16 -2.06 6.07 -25.20 -0.15 -2.21 16 16 C 0.14 1.72 3.10 -67.32 -0.21 1.51 16 17 H 0.11 1.66 6.95 -51.93 -0.36 1.30 16 18 C 0.07 0.87 3.73 -66.14 -0.25 0.63 16 19 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 20 C -0.15 -1.54 3.44 -26.86 -0.09 -1.63 16 21 C -0.13 -0.93 6.11 -26.62 -0.16 -1.09 16 22 C 0.10 0.67 6.05 -3.64 -0.02 0.65 16 23 N -0.60 -5.82 2.73 -165.05 -0.45 -6.27 16 24 C 0.51 5.30 7.66 -10.99 -0.08 5.21 16 25 O -0.54 -7.86 15.30 5.55 0.08 -7.78 16 26 C -0.14 -0.79 4.01 -27.88 -0.11 -0.90 16 27 C -0.14 -0.97 4.96 -26.73 -0.13 -1.10 16 28 C 0.06 0.33 7.55 37.16 0.28 0.61 16 29 F -0.22 -1.96 17.36 2.25 0.04 -1.92 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 31 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.06 0.90 5.29 -51.93 -0.27 0.63 16 34 H 0.08 1.61 7.90 -51.93 -0.41 1.20 16 35 H 0.07 1.28 6.22 -51.93 -0.32 0.96 16 36 H 0.06 0.79 6.81 -51.93 -0.35 0.44 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.78 7.07 -51.93 -0.37 0.42 16 39 H 0.07 0.80 6.19 -51.93 -0.32 0.48 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.48 7.53 -51.92 -0.39 0.09 16 43 H 0.09 0.32 5.82 -51.93 -0.30 0.02 16 44 H 0.10 0.36 7.93 -51.93 -0.41 -0.05 16 45 H 0.10 0.35 7.61 -51.93 -0.40 -0.05 16 46 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 47 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 48 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -33.14 379.45 -8.89 -42.03 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -7.54 Total: 8.96 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.29 Total: 5.46 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.95 Total: -53.17 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.16 Total: -22.93 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.14 -8.89 -42.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733607875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.743 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds